Collecting proatac==0.4.0 1 location(s) to search for versions of proatac: * https://pypi.python.org/simple/proatac/ Getting page https://pypi.python.org/simple/proatac/ Analyzing links from page https://pypi.python.org/simple/proatac/ Found link https://pypi.python.org/packages/13/59/99f0782afcb1bda481dbfedab22a7ea84dff00670c52478327ddb04dba8b/proatac-0.4.0.tar.gz#md5=cb58341330b305f525bfc523279be883 (from https://pypi.python.org/simple/proatac/), version: 0.4.0 Found link https://pypi.python.org/packages/b0/6c/0fe30d9f0ec0c2675ec85e4644b012a36cd0263462093d2e55e186451c81/proatac-0.2.0.tar.gz#md5=f79f05eb44d8c6989fcdfa3dd0e5c654 (from https://pypi.python.org/simple/proatac/), version: 0.2.0 Found link https://pypi.python.org/packages/b9/7e/d1ec563e51f4851dd5e26e44438de35860888c4fec4855cacc6b6dbdd31c/proatac-0.2.3.tar.gz#md5=487c63f897e97e75a7fb90d1dda4ca47 (from https://pypi.python.org/simple/proatac/), version: 0.2.3 Found link https://pypi.python.org/packages/ce/2b/4a51a94c950884ac3dbee48fa8102e7ecd1ce395a0f7107253c222897c84/proatac-0.3.9.tar.gz#md5=4e0a2e211407454858c8bba8c60b6cf6 (from https://pypi.python.org/simple/proatac/), version: 0.3.9 Using version 0.4.0 (newest of versions: 0.4.0) Downloading proatac-0.4.0.tar.gz (8.1MB) Downloading from URL https://pypi.python.org/packages/13/59/99f0782afcb1bda481dbfedab22a7ea84dff00670c52478327ddb04dba8b/proatac-0.4.0.tar.gz#md5=cb58341330b305f525bfc523279be883 (from https://pypi.python.org/simple/proatac/) Running setup.py (path:/tmp/pip-build-nfixcyk7/proatac/setup.py) egg_info for package proatac Running command python setup.py egg_info running egg_info creating pip-egg-info/proatac.egg-info writing requirements to pip-egg-info/proatac.egg-info/requires.txt writing entry points to pip-egg-info/proatac.egg-info/entry_points.txt writing top-level names to pip-egg-info/proatac.egg-info/top_level.txt writing pip-egg-info/proatac.egg-info/PKG-INFO writing dependency_links to pip-egg-info/proatac.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/proatac.egg-info/SOURCES.txt' warning: manifest_maker: standard file '-c' not found reading manifest file 'pip-egg-info/proatac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'proatac.egg-info/' no previously-included directories found matching 'tests/' no previously-included directories found matching '*.DS_Store' writing manifest file 'pip-egg-info/proatac.egg-info/SOURCES.txt' Source in /tmp/pip-build-nfixcyk7/proatac has version 0.4.0, which satisfies requirement proatac==0.4.0 from https://pypi.python.org/packages/13/59/99f0782afcb1bda481dbfedab22a7ea84dff00670c52478327ddb04dba8b/proatac-0.4.0.tar.gz#md5=cb58341330b305f525bfc523279be883 Building wheels for collected packages: proatac Running setup.py bdist_wheel for proatac: started Destination directory: /tmp/tmpu_tpfygjpip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-nfixcyk7/proatac/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpu_tpfygjpip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/proatac copying proatac/proatacHelp.py -> build/lib/proatac copying proatac/__init__.py -> build/lib/proatac copying proatac/cli.py -> build/lib/proatac copying proatac/proatacProjectClass.py -> build/lib/proatac running egg_info writing proatac.egg-info/PKG-INFO writing dependency_links to proatac.egg-info/dependency_links.txt writing entry points to proatac.egg-info/entry_points.txt writing requirements to proatac.egg-info/requires.txt writing top-level names to proatac.egg-info/top_level.txt warning: manifest_maker: standard file '-c' not found reading manifest file 'proatac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'proatac.egg-info/' no previously-included directories found matching 'tests/' no previously-included directories found matching '*.DS_Store' writing manifest file 'proatac.egg-info/SOURCES.txt' copying proatac/.DS_Store -> build/lib/proatac copying proatac/__init__.pyc -> build/lib/proatac copying proatac/cli.pyc -> build/lib/proatac creating build/lib/proatac/anno creating build/lib/proatac/anno/TSS copying proatac/anno/TSS/hg19.refGene.TSS.bed -> build/lib/proatac/anno/TSS copying proatac/anno/TSS/hg19_mm10_c.refGene.TSS.bed -> build/lib/proatac/anno/TSS copying proatac/anno/TSS/hg38.refGene.TSS.bed -> build/lib/proatac/anno/TSS copying proatac/anno/TSS/mm10.refGene.TSS.bed -> build/lib/proatac/anno/TSS copying proatac/anno/TSS/mm9.refGene.TSS.bed -> build/lib/proatac/anno/TSS creating build/lib/proatac/anno/bedtools copying proatac/anno/bedtools/chrom_hg19.sizes -> build/lib/proatac/anno/bedtools copying proatac/anno/bedtools/chrom_hg19_mm10_c.sizes -> build/lib/proatac/anno/bedtools copying proatac/anno/bedtools/chrom_hg38.sizes -> build/lib/proatac/anno/bedtools copying proatac/anno/bedtools/chrom_mm10.sizes -> build/lib/proatac/anno/bedtools copying proatac/anno/bedtools/chrom_mm9.sizes -> build/lib/proatac/anno/bedtools creating build/lib/proatac/anno/blacklist copying proatac/anno/blacklist/hg19.full.blacklist.bed -> build/lib/proatac/anno/blacklist copying proatac/anno/blacklist/hg19_mm10_c.full.blacklist.bed -> build/lib/proatac/anno/blacklist copying proatac/anno/blacklist/hg38.full.blacklist.bed -> build/lib/proatac/anno/blacklist copying proatac/anno/blacklist/mm10.full.blacklist.bed -> build/lib/proatac/anno/blacklist copying proatac/anno/blacklist/mm9.full.blacklist.bed -> build/lib/proatac/anno/blacklist creating build/lib/proatac/anno/multiqc copying proatac/anno/multiqc/logo.png -> build/lib/proatac/anno/multiqc copying proatac/anno/multiqc/proatac.multiqc.config.yaml -> build/lib/proatac/anno/multiqc creating build/lib/proatac/bin creating build/lib/proatac/bin/R copying proatac/bin/R/makeCountsTable.R -> build/lib/proatac/bin/R copying proatac/bin/R/summitsToCleanPeaks.R -> build/lib/proatac/bin/R creating build/lib/proatac/bin/picard copying proatac/bin/picard/CollectInsertSizeMetrics.jar -> build/lib/proatac/bin/picard copying proatac/bin/picard/EstimateLibraryComplexity.jar -> build/lib/proatac/bin/picard copying proatac/bin/picard/MarkDuplicates.jar -> build/lib/proatac/bin/picard creating build/lib/proatac/bin/python copying proatac/bin/python/oneProatacSample.py -> build/lib/proatac/bin/python copying proatac/bin/python/py3_ATACtrim.py -> build/lib/proatac/bin/python copying proatac/bin/python/py3_bedCount.py -> build/lib/proatac/bin/python copying proatac/bin/python/py3_makeVvec.py -> build/lib/proatac/bin/python creating build/lib/proatac/bin/snake copying proatac/bin/snake/Snakefile.proatac.gather -> build/lib/proatac/bin/snake copying proatac/bin/snake/Snakefile.proatac.scatter -> build/lib/proatac/bin/snake creating build/lib/proatac/bin/static copying proatac/bin/static/.DS_Store -> build/lib/proatac/bin/static copying proatac/bin/static/bedClip_linux -> build/lib/proatac/bin/static copying proatac/bin/static/bedClip_mac -> build/lib/proatac/bin/static copying proatac/bin/static/bedGraphToBigWig_linux -> build/lib/proatac/bin/static copying proatac/bin/static/bedGraphToBigWig_mac -> build/lib/proatac/bin/static installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/proatac copying build/lib/proatac/proatacHelp.py -> build/bdist.linux-armv7l/wheel/proatac copying build/lib/proatac/cli.pyc -> build/bdist.linux-armv7l/wheel/proatac creating build/bdist.linux-armv7l/wheel/proatac/anno creating build/bdist.linux-armv7l/wheel/proatac/anno/TSS copying build/lib/proatac/anno/TSS/hg38.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/TSS copying build/lib/proatac/anno/TSS/hg19_mm10_c.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/TSS copying build/lib/proatac/anno/TSS/mm10.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/TSS copying build/lib/proatac/anno/TSS/mm9.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/TSS copying build/lib/proatac/anno/TSS/hg19.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/TSS creating build/bdist.linux-armv7l/wheel/proatac/anno/bedtools copying build/lib/proatac/anno/bedtools/chrom_mm9.sizes -> build/bdist.linux-armv7l/wheel/proatac/anno/bedtools copying build/lib/proatac/anno/bedtools/chrom_hg19.sizes -> build/bdist.linux-armv7l/wheel/proatac/anno/bedtools copying build/lib/proatac/anno/bedtools/chrom_hg38.sizes -> build/bdist.linux-armv7l/wheel/proatac/anno/bedtools copying build/lib/proatac/anno/bedtools/chrom_mm10.sizes -> build/bdist.linux-armv7l/wheel/proatac/anno/bedtools copying build/lib/proatac/anno/bedtools/chrom_hg19_mm10_c.sizes -> build/bdist.linux-armv7l/wheel/proatac/anno/bedtools creating build/bdist.linux-armv7l/wheel/proatac/anno/blacklist copying build/lib/proatac/anno/blacklist/mm10.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/blacklist copying build/lib/proatac/anno/blacklist/hg19.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/blacklist copying build/lib/proatac/anno/blacklist/mm9.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/blacklist copying build/lib/proatac/anno/blacklist/hg19_mm10_c.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/blacklist copying build/lib/proatac/anno/blacklist/hg38.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/proatac/anno/blacklist creating build/bdist.linux-armv7l/wheel/proatac/anno/multiqc copying build/lib/proatac/anno/multiqc/proatac.multiqc.config.yaml -> build/bdist.linux-armv7l/wheel/proatac/anno/multiqc copying build/lib/proatac/anno/multiqc/logo.png -> build/bdist.linux-armv7l/wheel/proatac/anno/multiqc copying build/lib/proatac/__init__.py -> build/bdist.linux-armv7l/wheel/proatac creating build/bdist.linux-armv7l/wheel/proatac/bin creating build/bdist.linux-armv7l/wheel/proatac/bin/python copying build/lib/proatac/bin/python/oneProatacSample.py -> build/bdist.linux-armv7l/wheel/proatac/bin/python copying build/lib/proatac/bin/python/py3_bedCount.py -> build/bdist.linux-armv7l/wheel/proatac/bin/python copying build/lib/proatac/bin/python/py3_makeVvec.py -> build/bdist.linux-armv7l/wheel/proatac/bin/python copying build/lib/proatac/bin/python/py3_ATACtrim.py -> build/bdist.linux-armv7l/wheel/proatac/bin/python creating build/bdist.linux-armv7l/wheel/proatac/bin/snake copying build/lib/proatac/bin/snake/Snakefile.proatac.gather -> build/bdist.linux-armv7l/wheel/proatac/bin/snake copying build/lib/proatac/bin/snake/Snakefile.proatac.scatter -> build/bdist.linux-armv7l/wheel/proatac/bin/snake creating build/bdist.linux-armv7l/wheel/proatac/bin/R copying build/lib/proatac/bin/R/makeCountsTable.R -> build/bdist.linux-armv7l/wheel/proatac/bin/R copying build/lib/proatac/bin/R/summitsToCleanPeaks.R -> build/bdist.linux-armv7l/wheel/proatac/bin/R creating build/bdist.linux-armv7l/wheel/proatac/bin/picard copying build/lib/proatac/bin/picard/EstimateLibraryComplexity.jar -> build/bdist.linux-armv7l/wheel/proatac/bin/picard copying build/lib/proatac/bin/picard/MarkDuplicates.jar -> build/bdist.linux-armv7l/wheel/proatac/bin/picard copying build/lib/proatac/bin/picard/CollectInsertSizeMetrics.jar -> build/bdist.linux-armv7l/wheel/proatac/bin/picard creating build/bdist.linux-armv7l/wheel/proatac/bin/static copying build/lib/proatac/bin/static/bedClip_mac -> build/bdist.linux-armv7l/wheel/proatac/bin/static copying build/lib/proatac/bin/static/bedGraphToBigWig_linux -> build/bdist.linux-armv7l/wheel/proatac/bin/static copying build/lib/proatac/bin/static/.DS_Store -> build/bdist.linux-armv7l/wheel/proatac/bin/static copying build/lib/proatac/bin/static/bedGraphToBigWig_mac -> build/bdist.linux-armv7l/wheel/proatac/bin/static copying build/lib/proatac/bin/static/bedClip_linux -> build/bdist.linux-armv7l/wheel/proatac/bin/static copying build/lib/proatac/.DS_Store -> build/bdist.linux-armv7l/wheel/proatac copying build/lib/proatac/cli.py -> build/bdist.linux-armv7l/wheel/proatac copying build/lib/proatac/proatacProjectClass.py -> build/bdist.linux-armv7l/wheel/proatac copying build/lib/proatac/__init__.pyc -> build/bdist.linux-armv7l/wheel/proatac running install_egg_info Copying proatac.egg-info to build/bdist.linux-armv7l/wheel/proatac-0.4.0.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/proatac-0.4.0.dist-info/WHEEL creating '/tmp/tmpu_tpfygjpip-wheel-/proatac-0.4.0-py2.py3-none-any.whl' and adding '.' to it adding 'proatac/.DS_Store' adding 'proatac/__init__.py' adding 'proatac/__init__.pyc' adding 'proatac/cli.py' adding 'proatac/cli.pyc' adding 'proatac/proatacHelp.py' adding 'proatac/proatacProjectClass.py' adding 'proatac/anno/TSS/hg19.refGene.TSS.bed' adding 'proatac/anno/TSS/hg19_mm10_c.refGene.TSS.bed' adding 'proatac/anno/TSS/hg38.refGene.TSS.bed' adding 'proatac/anno/TSS/mm10.refGene.TSS.bed' adding 'proatac/anno/TSS/mm9.refGene.TSS.bed' adding 'proatac/anno/bedtools/chrom_hg19.sizes' adding 'proatac/anno/bedtools/chrom_hg19_mm10_c.sizes' adding 'proatac/anno/bedtools/chrom_hg38.sizes' adding 'proatac/anno/bedtools/chrom_mm10.sizes' adding 'proatac/anno/bedtools/chrom_mm9.sizes' adding 'proatac/anno/blacklist/hg19.full.blacklist.bed' adding 'proatac/anno/blacklist/hg19_mm10_c.full.blacklist.bed' adding 'proatac/anno/blacklist/hg38.full.blacklist.bed' adding 'proatac/anno/blacklist/mm10.full.blacklist.bed' adding 'proatac/anno/blacklist/mm9.full.blacklist.bed' adding 'proatac/anno/multiqc/logo.png' adding 'proatac/anno/multiqc/proatac.multiqc.config.yaml' adding 'proatac/bin/R/makeCountsTable.R' adding 'proatac/bin/R/summitsToCleanPeaks.R' adding 'proatac/bin/picard/CollectInsertSizeMetrics.jar' adding 'proatac/bin/picard/EstimateLibraryComplexity.jar' adding 'proatac/bin/picard/MarkDuplicates.jar' adding 'proatac/bin/python/oneProatacSample.py' adding 'proatac/bin/python/py3_ATACtrim.py' adding 'proatac/bin/python/py3_bedCount.py' adding 'proatac/bin/python/py3_makeVvec.py' adding 'proatac/bin/snake/Snakefile.proatac.gather' adding 'proatac/bin/snake/Snakefile.proatac.scatter' adding 'proatac/bin/static/.DS_Store' adding 'proatac/bin/static/bedClip_linux' adding 'proatac/bin/static/bedClip_mac' adding 'proatac/bin/static/bedGraphToBigWig_linux' adding 'proatac/bin/static/bedGraphToBigWig_mac' adding 'proatac-0.4.0.dist-info/DESCRIPTION.rst' adding 'proatac-0.4.0.dist-info/entry_points.txt' adding 'proatac-0.4.0.dist-info/metadata.json' adding 'proatac-0.4.0.dist-info/top_level.txt' adding 'proatac-0.4.0.dist-info/WHEEL' adding 'proatac-0.4.0.dist-info/METADATA' adding 'proatac-0.4.0.dist-info/RECORD' Running setup.py bdist_wheel for proatac: finished with status 'done' Stored in directory: /tmp/tmpcg04pipe Successfully built proatac Cleaning up... Removing source in /tmp/pip-build-nfixcyk7/proatac