Collecting RILseq==0.53 1 location(s) to search for versions of RILseq: * https://pypi.python.org/simple/rilseq/ Getting page https://pypi.python.org/simple/rilseq/ Analyzing links from page https://pypi.python.org/simple/rilseq/ Found link https://pypi.python.org/packages/00/27/7fcab32ecdf35d919c5760afa780dae6fc8e991e200bd2fec2238ab9eba1/RILseq-0.41.tar.gz#md5=fb621617835634743280674b49815153 (from https://pypi.python.org/simple/rilseq/), version: 0.41 Found link https://pypi.python.org/packages/02/fe/485c629f7d76094acc3bd4d98d556569e9449f0a6740d48b676d26e52b4b/RILseq-0.30.tar.gz#md5=dbc482afdd2724fa2159bc41ce16f9d0 (from https://pypi.python.org/simple/rilseq/), version: 0.30 Found link https://pypi.python.org/packages/0e/44/7935c2888f8231ffe1970f52d68b372a82d6dfd8f114dd571ae5a9601f3b/RILseq-0.25.tar.gz#md5=08c9788d388a143a272ae0fec5b7eb51 (from https://pypi.python.org/simple/rilseq/), version: 0.25 Found link https://pypi.python.org/packages/10/91/96cfda838aa82d040c866f52b20dcac6ae472be066121386b9664489c24f/RILseq-0.29.tar.gz#md5=146e048f04101cc605066e31c121fb99 (from https://pypi.python.org/simple/rilseq/), version: 0.29 Found link https://pypi.python.org/packages/14/13/0c5430f727b21530d6db83eba67259e43dad21d93c4d44ed2ba6c1db34ba/RILseq-0.21.tar.gz#md5=47bc8aca712e2f7bd9c6d12357dc4017 (from https://pypi.python.org/simple/rilseq/), version: 0.21 Found link https://pypi.python.org/packages/1c/cb/f10816a7b68f34e46c2297c3e1c7eee064d101d58b5aae1a76d34794e4fe/RILseq-0.23.tar.gz#md5=9fc87aff41ddb833f290662d1171b734 (from https://pypi.python.org/simple/rilseq/), version: 0.23 Found link https://pypi.python.org/packages/1e/e1/4f106b1bb1151bd34439633b88bd34b3a0c2fce0f71e0bfec4de94f0beeb/RILseq-0.40.tar.gz#md5=5e124fdf62de0d7e651c7c106872b396 (from https://pypi.python.org/simple/rilseq/), version: 0.40 Found link https://pypi.python.org/packages/29/e4/8803ffac93208052f3ad8b9d508fa722b8a2674e4e6329ab738360a81b56/RILseq-0.50.tar.gz#md5=26e20740c8bbdb244593c8b7b64670f1 (from https://pypi.python.org/simple/rilseq/), version: 0.50 Found link https://pypi.python.org/packages/32/19/83a683a5b0c5df91ed4743d7fadd2eeeead88f9c043463f2e0dd14ecb077/RILseq-0.37.tar.gz#md5=9c1de9dba55de48eecbbfc10bb2f3497 (from https://pypi.python.org/simple/rilseq/), version: 0.37 Found link https://pypi.python.org/packages/33/1a/7259e3ca841bdb8dc1dc2adbecc1e34892ee2420f5813cde68260bc78dfb/RILseq-0.31.tar.gz#md5=1791d2f2822194df34887081ba0f08e6 (from https://pypi.python.org/simple/rilseq/), version: 0.31 Found link https://pypi.python.org/packages/37/49/bcd131babe194066ea9133328184b295d6f14b89baf9c3b9fb95dd532b72/RILseq-0.49.tar.gz#md5=9067c6d05c241bd3c3b5effc99e97fa4 (from https://pypi.python.org/simple/rilseq/), version: 0.49 Found link https://pypi.python.org/packages/3a/ab/f7a491f6a1675e09ba77fee2d0399ca20240ae741f7a3879cff2579ebb4a/RILseq-0.39.tar.gz#md5=cdff5cb5a0a0a9fbd1c3f632d0b84d4c (from https://pypi.python.org/simple/rilseq/), version: 0.39 Found link https://pypi.python.org/packages/46/17/823bacc65a446f9abd2b6c40a7f7eb043a1f8416a7ea8197309e529ddf8b/RILseq-0.34.tar.gz#md5=7177c22bfbde577babb4ecded8d1bba3 (from https://pypi.python.org/simple/rilseq/), version: 0.34 Found link https://pypi.python.org/packages/4c/0b/23e49dff68fa36da7462b270222d72c0257ec22e5b87a81b75215cc6dadd/RILseq-0.52.tar.gz#md5=4ac377d5fa3d93062427e30ebe38aedf (from https://pypi.python.org/simple/rilseq/), version: 0.52 Found link https://pypi.python.org/packages/5c/76/ede179792e5527b5938ad7de7f6f9e6d7fe2093b702536883f6a96f45833/RILseq-0.53.tar.gz#md5=3e05fc43804c28965c22370acaf55a9b (from https://pypi.python.org/simple/rilseq/), version: 0.53 Found link https://pypi.python.org/packages/69/47/ef0541e288668a6d650b5ca4e83cbf91dc744c9883ed56fbbc635ea438b9/RILseq-0.27.tar.gz#md5=37a4b4a53412864f07b150fe00d5bdf5 (from https://pypi.python.org/simple/rilseq/), version: 0.27 Found link https://pypi.python.org/packages/6b/d2/05feab308b5a33d6f456147bad29a3dac5ea34d4bdd4bba3657f2650e4cc/RILseq-0.33.tar.gz#md5=472a31d832628fc5990a5ee50fc60441 (from https://pypi.python.org/simple/rilseq/), version: 0.33 Found link https://pypi.python.org/packages/7f/57/6e7e89a566e9052c0456e7519c1ae8e696796ef24715dc14aa7c7bfae6f9/RILseq-0.42.tar.gz#md5=f023ef4c578550ea0389eea3b74a38ff (from https://pypi.python.org/simple/rilseq/), version: 0.42 Found link https://pypi.python.org/packages/85/45/7a2248a57aab539bdc320be4d3307fe55346cfb380ff88ddade12a876f13/RILseq-0.22.tar.gz#md5=12938cf1c09d6b2b113e5f85ab05f8f0 (from https://pypi.python.org/simple/rilseq/), version: 0.22 Found link https://pypi.python.org/packages/8a/33/897931b42420326bf043f2a91f4ad1f103767dd0923185ecb2a205e382ad/RILseq-0.47.tar.gz#md5=62fe4822e08bf71c73c4c9f5a9f7f8d4 (from https://pypi.python.org/simple/rilseq/), version: 0.47 Found link https://pypi.python.org/packages/b0/9f/8677fb7f5ec6333fc8b631a0449dd9d262357244c80be4817c8888f8e8f6/RILseq-0.35.tar.gz#md5=884c5aee3f8b75fe5937aa65c51e5340 (from https://pypi.python.org/simple/rilseq/), version: 0.35 Found link https://pypi.python.org/packages/b3/ca/6249c910da933300ee38b635520427c6d79494fb003ae550cc26ac313b28/RILseq-0.54.tar.gz#md5=60d5bd446c518a3a4a31889e737e5b2e (from https://pypi.python.org/simple/rilseq/), version: 0.54 Found link https://pypi.python.org/packages/b3/ef/c8e5a640989489fa6ff7db72456ffc38d6763617673743390d8d4fe7f342/RILseq-0.26.tar.gz#md5=2f9880668f9fc14b64a03b32fda6d69c (from https://pypi.python.org/simple/rilseq/), version: 0.26 Found link https://pypi.python.org/packages/b8/0e/fefeb1007e8b10b6f7579c8b7e90194d19e7da4b3f4ecc3ceae8f62e2c14/RILseq-0.51.tar.gz#md5=96f8750ded0ecedf95ab920bd2025334 (from https://pypi.python.org/simple/rilseq/), version: 0.51 Found link https://pypi.python.org/packages/ba/fb/f00f2e5087958f7eb76dce6447c0d1bfb5207e0c2a97e42f62500e59651c/RILseq-0.32.tar.gz#md5=71ec49525dc53c8d8307c1dd26c89895 (from https://pypi.python.org/simple/rilseq/), version: 0.32 Found link https://pypi.python.org/packages/be/c2/4e58b67ef58ea5adb74d5c9e1830b4aa6ed0a00c75fdada947bb982f216f/RILseq-0.28.tar.gz#md5=fccb49be7fea0eb78dd91fcbc01bdf21 (from https://pypi.python.org/simple/rilseq/), version: 0.28 Found link https://pypi.python.org/packages/c0/65/368da64e6340b103fa48f977e7adc2751c368ac0956b0351c1f0cda44fb7/RILseq-0.1.tar.gz#md5=00ffffd12f0fb2dbfab353fa913069db (from https://pypi.python.org/simple/rilseq/), version: 0.1 Found link https://pypi.python.org/packages/c1/1a/f0faaff7baefa5cec03a2bd8021115d51b0642a592c86efacda6e03ace2f/RILseq-0.38.tar.gz#md5=9b801d6997d2a28bda9d61fcc2ac658b (from https://pypi.python.org/simple/rilseq/), version: 0.38 Found link https://pypi.python.org/packages/c2/25/e9bb69a1f3f1d4374f544f50b445c51430ed74bcd74b77d087f2a37dc986/RILseq-0.44.tar.gz#md5=57bddf592a42ae45c33f8396b8ef921c (from https://pypi.python.org/simple/rilseq/), version: 0.44 Found link https://pypi.python.org/packages/c9/92/a3b6671463d664258064b04a3477fa2773d6ee01501032f7aa74aff30f2a/RILseq-0.48.tar.gz#md5=a12aa28a53afbd1d608e4d16880344a0 (from https://pypi.python.org/simple/rilseq/), version: 0.48 Found link https://pypi.python.org/packages/d0/64/796a0ca68d76094112e5330a13ba916f0812c36072a8748c0a703839c8cf/RILseq-0.2.tar.gz#md5=96eb865c4922e5332bb0fc36eca549e8 (from https://pypi.python.org/simple/rilseq/), version: 0.2 Found link https://pypi.python.org/packages/df/3e/a3a44f4edfb765362f21362862419c93c66ec95670f75d9e56248502c2df/RILseq-0.55.tar.gz#md5=d337d7224b3c1b0fdec5610e056c427f (from https://pypi.python.org/simple/rilseq/), version: 0.55 Found link https://pypi.python.org/packages/e1/b8/367dd3980ff34133e5caa42bd0e6bd38514a5eeabac12ff69958e18e8bf6/RILseq-0.45.tar.gz#md5=e39f372477737d8580e6577ed7404d31 (from https://pypi.python.org/simple/rilseq/), version: 0.45 Found link https://pypi.python.org/packages/ef/f3/f259ee0c35f06663d03764ff1c2ae16366675eb80008f31ac9de13902ee9/RILseq-0.36.tar.gz#md5=311c98326ec273757701ad1514e1dd85 (from https://pypi.python.org/simple/rilseq/), version: 0.36 Found link https://pypi.python.org/packages/f7/13/f3119a39050945f4db678c0aaa484e13027fbe83af1fc8b9414bbe3cc0ec/RILseq-0.24.tar.gz#md5=1b78ef2616ec6720b00e47a0dd373d21 (from https://pypi.python.org/simple/rilseq/), version: 0.24 Found link https://pypi.python.org/packages/ff/ec/385671ba85378ba8cc8ecc1c4e69973e7416680c4975d02c66871b3d2225/RILseq-0.43.tar.gz#md5=842cc040934eb618851f4c64f9fca6f4 (from https://pypi.python.org/simple/rilseq/), version: 0.43 Using version 0.53 (newest of versions: 0.53) Downloading RILseq-0.53.tar.gz (46kB) Downloading from URL https://pypi.python.org/packages/5c/76/ede179792e5527b5938ad7de7f6f9e6d7fe2093b702536883f6a96f45833/RILseq-0.53.tar.gz#md5=3e05fc43804c28965c22370acaf55a9b (from https://pypi.python.org/simple/rilseq/) Running setup.py (path:/tmp/pip-build-wkflaonh/RILseq/setup.py) egg_info for package RILseq Running command python setup.py egg_info running egg_info creating pip-egg-info/RILseq.egg-info writing dependency_links to pip-egg-info/RILseq.egg-info/dependency_links.txt writing top-level names to pip-egg-info/RILseq.egg-info/top_level.txt writing pip-egg-info/RILseq.egg-info/PKG-INFO writing requirements to pip-egg-info/RILseq.egg-info/requires.txt writing manifest file 'pip-egg-info/RILseq.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/RILseq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'data/E_coli_K12/curated_list_of_sRNA_mRNA_interactions.txt' warning: no files found matching 'data/E_coli_K12/EcoCyc_genes_190.gff' warning: no files found matching 'data/E_coli_K12/EcoCyc_transcripts_190.gff' warning: no files found matching 'data/E_coli_K12/genome.fa' warning: no files found matching 'data/E_coli_K12/REP_elements_table_from_SmartTrables.txt' warning: no files found matching 'data/E_coli_K12/draw_links.conf' warning: no files found matching 'data/E_coli_K12/ec_karyotype.conf' warning: no files found matching 'data/E_coli_K12/sRNAs_highlight_wide.txt' warning: no files found matching 'data/E_coli_K12/tRNAs_highlight_wide.txt' warning: no files found matching 'data/E_coli_K12/rRNAs_highlight.txt' warning: no files found matching 'ecocyc-logo.jpg' writing manifest file 'pip-egg-info/RILseq.egg-info/SOURCES.txt' Source in /tmp/pip-build-wkflaonh/RILseq has version 0.53, which satisfies requirement RILseq==0.53 from https://pypi.python.org/packages/5c/76/ede179792e5527b5938ad7de7f6f9e6d7fe2093b702536883f6a96f45833/RILseq-0.53.tar.gz#md5=3e05fc43804c28965c22370acaf55a9b Building wheels for collected packages: RILseq Running setup.py bdist_wheel for RILseq: started Destination directory: /tmp/tmpycg_0xddpip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-wkflaonh/RILseq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpycg_0xddpip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/RILseq copying RILseq/RNAup_tar_pred.py -> build/lib/RILseq copying RILseq/dinuc_shuffle.py -> build/lib/RILseq copying RILseq/ecocyc_parser.py -> build/lib/RILseq copying RILseq/parse_ecocyc_TUs.py -> build/lib/RILseq copying RILseq/__init__.py -> build/lib/RILseq running egg_info writing requirements to RILseq.egg-info/requires.txt writing top-level names to RILseq.egg-info/top_level.txt writing RILseq.egg-info/PKG-INFO writing dependency_links to RILseq.egg-info/dependency_links.txt reading manifest file 'RILseq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'data/E_coli_K12/curated_list_of_sRNA_mRNA_interactions.txt' warning: no files found matching 'data/E_coli_K12/EcoCyc_genes_190.gff' warning: no files found matching 'data/E_coli_K12/EcoCyc_transcripts_190.gff' warning: no files found matching 'data/E_coli_K12/genome.fa' warning: no files found matching 'data/E_coli_K12/REP_elements_table_from_SmartTrables.txt' warning: no files found matching 'data/E_coli_K12/draw_links.conf' warning: no files found matching 'data/E_coli_K12/ec_karyotype.conf' warning: no files found matching 'data/E_coli_K12/sRNAs_highlight_wide.txt' warning: no files found matching 'data/E_coli_K12/tRNAs_highlight_wide.txt' warning: no files found matching 'data/E_coli_K12/rRNAs_highlight.txt' warning: no files found matching 'ecocyc-logo.jpg' writing manifest file 'RILseq.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.4 copying and adjusting bin/map_chimeric_fragments.py -> build/scripts-3.4 copying and adjusting bin/map_single_fragments.py -> build/scripts-3.4 copying and adjusting bin/RILseq_significant_regions.py -> build/scripts-3.4 copying and adjusting bin/generate_genes_gff.py -> build/scripts-3.4 copying and adjusting bin/generate_transcripts_gff.py -> build/scripts-3.4 copying and adjusting bin/plot_circos_plot.py -> build/scripts-3.4 copying and adjusting bin/generate_BED_file_of_endpoints.py -> build/scripts-3.4 copying and adjusting bin/count_chimeric_reads_per_gene.py -> build/scripts-3.4 copying and adjusting bin/get_sequences_for_meme.py -> build/scripts-3.4 copying and adjusting bin/plot_regions_interactions.py -> build/scripts-3.4 changing mode of build/scripts-3.4/map_chimeric_fragments.py from 644 to 755 changing mode of build/scripts-3.4/map_single_fragments.py from 644 to 755 changing mode of build/scripts-3.4/RILseq_significant_regions.py from 644 to 755 changing mode of build/scripts-3.4/generate_genes_gff.py from 644 to 755 changing mode of build/scripts-3.4/generate_transcripts_gff.py from 644 to 755 changing mode of build/scripts-3.4/plot_circos_plot.py from 644 to 755 changing mode of build/scripts-3.4/generate_BED_file_of_endpoints.py from 644 to 755 changing mode of build/scripts-3.4/count_chimeric_reads_per_gene.py from 644 to 755 changing mode of build/scripts-3.4/get_sequences_for_meme.py from 644 to 755 changing mode of build/scripts-3.4/plot_regions_interactions.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/RILseq copying build/lib/RILseq/RNAup_tar_pred.py -> build/bdist.linux-armv7l/wheel/RILseq copying build/lib/RILseq/dinuc_shuffle.py -> build/bdist.linux-armv7l/wheel/RILseq copying build/lib/RILseq/ecocyc_parser.py -> build/bdist.linux-armv7l/wheel/RILseq copying build/lib/RILseq/parse_ecocyc_TUs.py -> build/bdist.linux-armv7l/wheel/RILseq copying build/lib/RILseq/__init__.py -> build/bdist.linux-armv7l/wheel/RILseq running install_egg_info Copying RILseq.egg-info to build/bdist.linux-armv7l/wheel/RILseq-0.53-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/RILseq-0.53.data creating build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/generate_genes_gff.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/generate_transcripts_gff.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/plot_circos_plot.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/get_sequences_for_meme.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/map_single_fragments.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/generate_BED_file_of_endpoints.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/map_chimeric_fragments.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/count_chimeric_reads_per_gene.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/plot_regions_interactions.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts copying build/scripts-3.4/RILseq_significant_regions.py -> build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/generate_genes_gff.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/generate_transcripts_gff.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/plot_circos_plot.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/get_sequences_for_meme.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/map_single_fragments.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/generate_BED_file_of_endpoints.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/map_chimeric_fragments.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/count_chimeric_reads_per_gene.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/plot_regions_interactions.py to 755 changing mode of build/bdist.linux-armv7l/wheel/RILseq-0.53.data/scripts/RILseq_significant_regions.py to 755 creating build/bdist.linux-armv7l/wheel/RILseq-0.53.dist-info/WHEEL Running setup.py bdist_wheel for RILseq: finished with status 'done' Stored in directory: /tmp/tmp2co4bqpa Successfully built RILseq Cleaning up... Removing source in /tmp/pip-build-wkflaonh/RILseq