Collecting seq-tools==1.0.9 1 location(s) to search for versions of seq-tools: * https://pypi.python.org/simple/seq-tools/ Getting page https://pypi.python.org/simple/seq-tools/ Analyzing links from page https://pypi.python.org/simple/seq-tools/ Found link https://pypi.python.org/packages/3f/e6/68abbdd0fe0074ea362f405b60b70ea3eab59c5467d5fee8bc8a60c43815/seq-tools-1.0.9.tar.gz#md5=afba6d3bfcce9b5eb1796d91e468c023 (from https://pypi.python.org/simple/seq-tools/), version: 1.0.9 Skipping link https://pypi.python.org/packages/64/74/acadc2a6ee41e53a8b1b279238b7ecb3b4d975c32e9cce79e0cacffdf33b/seq_tools-0.1.0-py2-none-any.whl#md5=f4ee9de1a3358a15cba18ef4de59cdf0 (from https://pypi.python.org/simple/seq-tools/); it is not compatible with this Python Skipping link https://pypi.python.org/packages/a9/c9/457aded07024c16d07934a4caf439e0664db80690eaa9d9842ecb67c565f/seq_tools-0.2.0-py2-none-any.whl#md5=b583fd40230a919b17a6d097cf49377e (from https://pypi.python.org/simple/seq-tools/); it is not compatible with this Python Skipping link https://pypi.python.org/packages/ad/07/3893fb757b1adf0d6189e9d0732317c7495de5258f72c04bc425cc55ed0d/seq_tools-1.0.9-py2-none-any.whl#md5=75af5b40695965c5d8295a0f1ec18415 (from https://pypi.python.org/simple/seq-tools/); it is not compatible with this Python Found link https://pypi.python.org/packages/b6/3a/84aa0baa3eda8cad6707e6e9bd7690a2d5eda90f5ce77fdd06e89b7e3c71/seq-tools-0.2.0.tar.gz#md5=196aef9100a585f21d0f4caec3bb8b8f (from https://pypi.python.org/simple/seq-tools/), version: 0.2.0 Found link https://pypi.python.org/packages/b7/8b/14eefd9ad0a82a5e55301f1a14b99f8f5d1318355b1e7d5e7af3d88a2f6f/seq-tools-0.1.0.tar.gz#md5=a7aa4c47746c4a844b5373067583eff9 (from https://pypi.python.org/simple/seq-tools/), version: 0.1.0 Found link https://pypi.python.org/packages/d6/5c/ccf81112b2b1e9f99e68d2ee44a9c1f0810d8891df1e5debd76183d5b6e9/seq-tools-1.0.7.tar.gz#md5=adf342ec5836092ce3b69e8b5edf4ae9 (from https://pypi.python.org/simple/seq-tools/), version: 1.0.7 Using version 1.0.9 (newest of versions: 1.0.9) Downloading seq-tools-1.0.9.tar.gz (234kB) Downloading from URL https://pypi.python.org/packages/3f/e6/68abbdd0fe0074ea362f405b60b70ea3eab59c5467d5fee8bc8a60c43815/seq-tools-1.0.9.tar.gz#md5=afba6d3bfcce9b5eb1796d91e468c023 (from https://pypi.python.org/simple/seq-tools/) Running setup.py (path:/tmp/pip-build-2ws7bv2w/seq-tools/setup.py) egg_info for package seq-tools Running command python setup.py egg_info running egg_info creating pip-egg-info/seq_tools.egg-info writing top-level names to pip-egg-info/seq_tools.egg-info/top_level.txt writing dependency_links to pip-egg-info/seq_tools.egg-info/dependency_links.txt writing entry points to pip-egg-info/seq_tools.egg-info/entry_points.txt writing pip-egg-info/seq_tools.egg-info/PKG-INFO writing manifest file 'pip-egg-info/seq_tools.egg-info/SOURCES.txt' package init file 'seqtools/cli/legacy/__init__.py' not found (or not a regular file) reading manifest file 'pip-egg-info/seq_tools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'data' no previously-included directories found matching 'tests' writing manifest file 'pip-egg-info/seq_tools.egg-info/SOURCES.txt' Source in /tmp/pip-build-2ws7bv2w/seq-tools has version 1.0.9, which satisfies requirement seq-tools==1.0.9 from https://pypi.python.org/packages/3f/e6/68abbdd0fe0074ea362f405b60b70ea3eab59c5467d5fee8bc8a60c43815/seq-tools-1.0.9.tar.gz#md5=afba6d3bfcce9b5eb1796d91e468c023 Building wheels for collected packages: seq-tools Running setup.py bdist_wheel for seq-tools: started Destination directory: /tmp/tmpsbcrmisnpip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-2ws7bv2w/seq-tools/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpsbcrmisnpip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/seqtools copying seqtools/basics.py -> build/lib/seqtools copying seqtools/old_graph.py -> build/lib/seqtools copying seqtools/__init__.py -> build/lib/seqtools copying seqtools/stream.py -> build/lib/seqtools copying seqtools/align.py -> build/lib/seqtools copying seqtools/errors.py -> build/lib/seqtools copying seqtools/quantification.py -> build/lib/seqtools creating build/lib/seqtools/cli copying seqtools/cli/cli_front.py -> build/lib/seqtools/cli copying seqtools/cli/__init__.py -> build/lib/seqtools/cli package init file 'seqtools/cli/legacy/__init__.py' not found (or not a regular file) creating build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/get_meta_data_from_PSL_alignments.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/print_psl_alignment.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stitch_mate_pair_alignments.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_bed_depth_fast.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/nudge_psl_junctions_to_reference_output_gpd.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/genepred_intersect.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/split_bam_by_chr.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/hisat_to_uniquely_mapped.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bestannotation_into_rarefraction.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_sort_list.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bed_depth_to_bias_table.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/background.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/find_equivalent_splice_coordinates.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gmap_to_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/du_threaded.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/consecutive_junction_true_negative_detector.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_read_count.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/genepred_to_exon_bed.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/psl_to_target_bed.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/filter_vcf.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/add_UCSC_URL_to_bed.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_to_nonredundant.old.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sort_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/pacbio_concatonate_ccs_and_longest_subreads.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/convert_BWA-mem_to_psl.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_to_best_sam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bwa_sam_to_gpd.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/find_primers.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/fastq_quality_profiler.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/simulate_biallelic_transcriptome.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/split_bam_by_ONT_cell.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/hisat_to_mapping_count.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/fastq_bgzf_index.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/replace_LSC_corrected_with_full_when_similar_length.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/idp_output_to_bed_depth.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/psl_to_best_psl_entries.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/extract_ont_fastq.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/get_psl_quality.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/filter_psl.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stringtie_gtf_to_bed_depth.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/annotate_psl_with_gpd.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/smithwatermanNT.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/background_and_nascent_expression.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_to_nonredundant.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/IDP_merge_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sort.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_to_psl-old.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/genepred_to_ARS_transcriptome_fasta.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/junction_fix.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/find_novel_regions_per_read_depth.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/split_bam_by_pacbio_smrt_cell.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/transpose_matrix.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/squish_sam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_ont_best_molecule_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_longest_pacbio_molecule_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_vcf.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_intersect_bed_depth.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/filtered_gene_list_from_cufflinks_results.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/filter_sam_by_name_list.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/get_compatible_gpds.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/combine_splicemap_junction_color_bed.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/psl_to_best_path.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/fasta_to_average_read_size.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stat_median.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/psl_to_sam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_to_loci.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_to_bam_read_coverage.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/simulate_transcriptome.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_mapped_count.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_to_average_insert_size.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/genepred_to_fake_psl.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/validate_psl.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/rename_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gff3_to_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sort_fasta.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/simulate_fusion_genome.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/smithwaterman.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/splicemap_wrapper.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/filter_sam_positional_duplicates.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/idp_gene_identification_rate.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/vcf_to_biallelic_genomes.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_bed_exons.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/defragment_PSL_alignments.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stitch_partial_alignments.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/explode_fastq.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/optimize_qc.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/map_long_reads.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/genepred_to_loci.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_downsampled_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_to_gc_bias.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_to_slr.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_best_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/fastq_to_unmapped_sam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bio_to_lengths.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/explode_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_to_bed_depth.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/fix_psl_stats.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/transcriptome_psl_to_best_alignment_bed.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bam_to_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/make_unique_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/smooth_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/get_md5sum_on_all_files_in_directory.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_to_best_match_count.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bed_depth_to_stratified_percentage_bed.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/run_alignqc.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/genepred_to_alignment_lengths.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/combine_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/bed_tools.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stat_standard_deviation.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stat_mean.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sort_psl.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/pacbio_make_ccs90-95_sub75_set.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/get_overlap_bias_by_depth.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sort_fastq.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sam_flag_filter.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/sort_bam.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/change_UCSC_bed_color.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/psl_to_target_genepred.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/cat_numerical.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/filter_sam_junctions.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gmap_to_psl.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/stringtie_gtf_to_expression.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/psl_to_annotation_report.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/list_bam_read_counts.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/gpd_to_read_coverage.py -> build/lib/seqtools/cli/legacy copying seqtools/cli/legacy/get_chromosome_names_from_fasta.py -> build/lib/seqtools/cli/legacy creating build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_to_fasta.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/lr_to_transcriptome.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gtf_to_gpd.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/sam_to_splicemap_junction_bed.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/sam_to_psl.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/tsv_to_fastq.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_to_gtf_exons.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/fastq_to_fasta.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/bed_depth_to_stratified_coverage.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_to_nonredundant.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/fasta_to_fake_fastq.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/sort.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/iterate_salmon.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/trim_fasta.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/bam_bgzf_index.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_filter.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_to_bed_depth.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/sam_to_splicemap_like_sam.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/sam_to_gpd.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/rename_to_pacbio.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/__init__.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/fastq_to_salmon_quant.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_to_UCSC_bed12.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_annotate.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/tsv_to_fasta.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/fastq_to_tsv.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/pacbio_best_molecule_alignments.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/trim_fastq.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/bgzf.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/bam_to_bed_depth.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_reannotate.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/simulate_tx.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/fasta_to_tsv.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gpd_rename.py -> build/lib/seqtools/cli/utilities copying seqtools/cli/utilities/gtf_to_tsv.py -> build/lib/seqtools/cli/utilities creating build/lib/seqtools/format copying seqtools/format/psl.py -> build/lib/seqtools/format copying seqtools/format/pacbio.py -> build/lib/seqtools/format copying seqtools/format/gpd.py -> build/lib/seqtools/format copying seqtools/format/fastq.py -> build/lib/seqtools/format copying seqtools/format/__init__.py -> build/lib/seqtools/format copying seqtools/format/gtf.py -> build/lib/seqtools/format copying seqtools/format/bgzf.py -> build/lib/seqtools/format copying seqtools/format/bed.py -> build/lib/seqtools/format creating build/lib/seqtools/format/fasta copying seqtools/format/fasta/__init__.py -> build/lib/seqtools/format/fasta copying seqtools/format/fasta/test.py -> build/lib/seqtools/format/fasta creating build/lib/seqtools/format/sam copying seqtools/format/sam/header.py -> build/lib/seqtools/format/sam copying seqtools/format/sam/__init__.py -> build/lib/seqtools/format/sam copying seqtools/format/sam/test.py -> build/lib/seqtools/format/sam creating build/lib/seqtools/format/sam/bam copying seqtools/format/sam/bam/bamindex.py -> build/lib/seqtools/format/sam/bam copying seqtools/format/sam/bam/files.py -> build/lib/seqtools/format/sam/bam copying seqtools/format/sam/bam/__init__.py -> build/lib/seqtools/format/sam/bam creating build/lib/seqtools/graph copying seqtools/graph/__init__.py -> build/lib/seqtools/graph creating build/lib/seqtools/sequence copying seqtools/sequence/twobit.py -> build/lib/seqtools/sequence copying seqtools/sequence/__init__.py -> build/lib/seqtools/sequence creating build/lib/seqtools/range copying seqtools/range/locus.py -> build/lib/seqtools/range copying seqtools/range/__init__.py -> build/lib/seqtools/range copying seqtools/range/multi.py -> build/lib/seqtools/range creating build/lib/seqtools/simulation copying seqtools/simulation/randomsource.py -> build/lib/seqtools/simulation copying seqtools/simulation/emitter.py -> build/lib/seqtools/simulation copying seqtools/simulation/permute.py -> build/lib/seqtools/simulation copying seqtools/simulation/__init__.py -> build/lib/seqtools/simulation copying seqtools/simulation/test.py -> build/lib/seqtools/simulation creating build/lib/seqtools/statistics copying seqtools/statistics/__init__.py -> build/lib/seqtools/statistics copying seqtools/statistics/test.py -> build/lib/seqtools/statistics creating build/lib/seqtools/structure copying seqtools/structure/gene.py -> build/lib/seqtools/structure copying seqtools/structure/__init__.py -> build/lib/seqtools/structure copying seqtools/structure/test.py -> build/lib/seqtools/structure creating build/lib/seqtools/structure/transcript copying seqtools/structure/transcript/group.py -> build/lib/seqtools/structure/transcript copying seqtools/structure/transcript/__init__.py -> build/lib/seqtools/structure/transcript copying seqtools/structure/transcript/converters.py -> build/lib/seqtools/structure/transcript creating build/lib/seqtools/structure/transcriptome copying seqtools/structure/transcriptome/__init__.py -> build/lib/seqtools/structure/transcriptome copying seqtools/structure/transcriptome/test.py -> build/lib/seqtools/structure/transcriptome installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/seqtools creating build/bdist.linux-armv7l/wheel/seqtools/sequence copying build/lib/seqtools/sequence/twobit.py -> build/bdist.linux-armv7l/wheel/seqtools/sequence copying build/lib/seqtools/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/sequence creating build/bdist.linux-armv7l/wheel/seqtools/structure copying build/lib/seqtools/structure/gene.py -> build/bdist.linux-armv7l/wheel/seqtools/structure creating build/bdist.linux-armv7l/wheel/seqtools/structure/transcript copying build/lib/seqtools/structure/transcript/group.py -> build/bdist.linux-armv7l/wheel/seqtools/structure/transcript copying build/lib/seqtools/structure/transcript/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/structure/transcript copying build/lib/seqtools/structure/transcript/converters.py -> build/bdist.linux-armv7l/wheel/seqtools/structure/transcript creating build/bdist.linux-armv7l/wheel/seqtools/structure/transcriptome copying build/lib/seqtools/structure/transcriptome/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/structure/transcriptome copying build/lib/seqtools/structure/transcriptome/test.py -> build/bdist.linux-armv7l/wheel/seqtools/structure/transcriptome copying build/lib/seqtools/structure/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/structure copying build/lib/seqtools/structure/test.py -> build/bdist.linux-armv7l/wheel/seqtools/structure creating build/bdist.linux-armv7l/wheel/seqtools/cli creating build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/get_meta_data_from_PSL_alignments.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/print_psl_alignment.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stitch_mate_pair_alignments.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_bed_depth_fast.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/nudge_psl_junctions_to_reference_output_gpd.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/genepred_intersect.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/split_bam_by_chr.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/hisat_to_uniquely_mapped.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bestannotation_into_rarefraction.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_sort_list.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bed_depth_to_bias_table.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/background.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/find_equivalent_splice_coordinates.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gmap_to_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/du_threaded.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/consecutive_junction_true_negative_detector.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_read_count.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/genepred_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/psl_to_target_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/filter_vcf.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/add_UCSC_URL_to_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_to_nonredundant.old.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sort_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/pacbio_concatonate_ccs_and_longest_subreads.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/convert_BWA-mem_to_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_to_best_sam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bwa_sam_to_gpd.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/find_primers.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/fastq_quality_profiler.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/simulate_biallelic_transcriptome.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/split_bam_by_ONT_cell.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/hisat_to_mapping_count.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/fastq_bgzf_index.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/replace_LSC_corrected_with_full_when_similar_length.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/idp_output_to_bed_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/psl_to_best_psl_entries.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/extract_ont_fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/get_psl_quality.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/filter_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stringtie_gtf_to_bed_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/annotate_psl_with_gpd.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/smithwatermanNT.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/background_and_nascent_expression.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_to_nonredundant.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/IDP_merge_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sort.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_to_psl-old.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/genepred_to_ARS_transcriptome_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/junction_fix.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/find_novel_regions_per_read_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/split_bam_by_pacbio_smrt_cell.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/transpose_matrix.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/squish_sam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_ont_best_molecule_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_longest_pacbio_molecule_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_vcf.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_intersect_bed_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/filtered_gene_list_from_cufflinks_results.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/filter_sam_by_name_list.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/get_compatible_gpds.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/combine_splicemap_junction_color_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/psl_to_best_path.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/fasta_to_average_read_size.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stat_median.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/psl_to_sam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_to_loci.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_to_bam_read_coverage.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/simulate_transcriptome.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_mapped_count.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_to_average_insert_size.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/genepred_to_fake_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/validate_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/rename_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gff3_to_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sort_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/simulate_fusion_genome.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/smithwaterman.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/splicemap_wrapper.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/filter_sam_positional_duplicates.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/idp_gene_identification_rate.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/vcf_to_biallelic_genomes.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_bed_exons.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/defragment_PSL_alignments.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stitch_partial_alignments.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/explode_fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/optimize_qc.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/map_long_reads.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/genepred_to_loci.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_downsampled_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_to_gc_bias.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_to_slr.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_best_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/fastq_to_unmapped_sam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bio_to_lengths.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/explode_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_to_bed_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/fix_psl_stats.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/transcriptome_psl_to_best_alignment_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bam_to_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/make_unique_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/smooth_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/get_md5sum_on_all_files_in_directory.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_to_best_match_count.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bed_depth_to_stratified_percentage_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/run_alignqc.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/genepred_to_alignment_lengths.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/combine_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/bed_tools.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stat_standard_deviation.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stat_mean.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sort_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/pacbio_make_ccs90-95_sub75_set.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/get_overlap_bias_by_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sort_fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sam_flag_filter.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/sort_bam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/change_UCSC_bed_color.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/psl_to_target_genepred.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/cat_numerical.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/filter_sam_junctions.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gmap_to_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/stringtie_gtf_to_expression.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/psl_to_annotation_report.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/list_bam_read_counts.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/gpd_to_read_coverage.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/legacy/get_chromosome_names_from_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/legacy copying build/lib/seqtools/cli/cli_front.py -> build/bdist.linux-armv7l/wheel/seqtools/cli copying build/lib/seqtools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/cli creating build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_to_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/lr_to_transcriptome.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gtf_to_gpd.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/sam_to_splicemap_junction_bed.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/sam_to_psl.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/tsv_to_fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_to_gtf_exons.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/bed_depth_to_stratified_coverage.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_to_nonredundant.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/fasta_to_fake_fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/sort.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/iterate_salmon.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/trim_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/bam_bgzf_index.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_filter.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_to_bed_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/sam_to_splicemap_like_sam.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/sam_to_gpd.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/rename_to_pacbio.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/fastq_to_salmon_quant.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_to_UCSC_bed12.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_annotate.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/tsv_to_fasta.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/fastq_to_tsv.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/pacbio_best_molecule_alignments.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/trim_fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/bgzf.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/bam_to_bed_depth.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_reannotate.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/simulate_tx.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/fasta_to_tsv.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gpd_rename.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/cli/utilities/gtf_to_tsv.py -> build/bdist.linux-armv7l/wheel/seqtools/cli/utilities copying build/lib/seqtools/basics.py -> build/bdist.linux-armv7l/wheel/seqtools creating build/bdist.linux-armv7l/wheel/seqtools/range copying build/lib/seqtools/range/locus.py -> build/bdist.linux-armv7l/wheel/seqtools/range copying build/lib/seqtools/range/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/range copying build/lib/seqtools/range/multi.py -> build/bdist.linux-armv7l/wheel/seqtools/range copying build/lib/seqtools/old_graph.py -> build/bdist.linux-armv7l/wheel/seqtools copying build/lib/seqtools/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools copying build/lib/seqtools/stream.py -> build/bdist.linux-armv7l/wheel/seqtools creating build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/format/psl.py -> build/bdist.linux-armv7l/wheel/seqtools/format creating build/bdist.linux-armv7l/wheel/seqtools/format/fasta copying build/lib/seqtools/format/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/format/fasta copying build/lib/seqtools/format/fasta/test.py -> build/bdist.linux-armv7l/wheel/seqtools/format/fasta copying build/lib/seqtools/format/pacbio.py -> build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/format/gpd.py -> build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/format/fastq.py -> build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/format/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/format/gtf.py -> build/bdist.linux-armv7l/wheel/seqtools/format creating build/bdist.linux-armv7l/wheel/seqtools/format/sam copying build/lib/seqtools/format/sam/header.py -> build/bdist.linux-armv7l/wheel/seqtools/format/sam creating build/bdist.linux-armv7l/wheel/seqtools/format/sam/bam copying build/lib/seqtools/format/sam/bam/bamindex.py -> build/bdist.linux-armv7l/wheel/seqtools/format/sam/bam copying build/lib/seqtools/format/sam/bam/files.py -> build/bdist.linux-armv7l/wheel/seqtools/format/sam/bam copying build/lib/seqtools/format/sam/bam/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/format/sam/bam copying build/lib/seqtools/format/sam/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/format/sam copying build/lib/seqtools/format/sam/test.py -> build/bdist.linux-armv7l/wheel/seqtools/format/sam copying build/lib/seqtools/format/bgzf.py -> build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/format/bed.py -> build/bdist.linux-armv7l/wheel/seqtools/format copying build/lib/seqtools/align.py -> build/bdist.linux-armv7l/wheel/seqtools creating build/bdist.linux-armv7l/wheel/seqtools/simulation copying build/lib/seqtools/simulation/randomsource.py -> build/bdist.linux-armv7l/wheel/seqtools/simulation copying build/lib/seqtools/simulation/emitter.py -> build/bdist.linux-armv7l/wheel/seqtools/simulation copying build/lib/seqtools/simulation/permute.py -> build/bdist.linux-armv7l/wheel/seqtools/simulation copying build/lib/seqtools/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/simulation copying build/lib/seqtools/simulation/test.py -> build/bdist.linux-armv7l/wheel/seqtools/simulation creating build/bdist.linux-armv7l/wheel/seqtools/graph copying build/lib/seqtools/graph/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/graph copying build/lib/seqtools/errors.py -> build/bdist.linux-armv7l/wheel/seqtools copying build/lib/seqtools/quantification.py -> build/bdist.linux-armv7l/wheel/seqtools creating build/bdist.linux-armv7l/wheel/seqtools/statistics copying build/lib/seqtools/statistics/__init__.py -> build/bdist.linux-armv7l/wheel/seqtools/statistics copying build/lib/seqtools/statistics/test.py -> build/bdist.linux-armv7l/wheel/seqtools/statistics running install_egg_info running egg_info writing seq_tools.egg-info/PKG-INFO writing dependency_links to seq_tools.egg-info/dependency_links.txt writing entry points to seq_tools.egg-info/entry_points.txt writing top-level names to seq_tools.egg-info/top_level.txt reading manifest file 'seq_tools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'data' no previously-included directories found matching 'tests' writing manifest file 'seq_tools.egg-info/SOURCES.txt' Copying seq_tools.egg-info to build/bdist.linux-armv7l/wheel/seq_tools-1.0.9-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/seq_tools-1.0.9.dist-info/WHEEL Running setup.py bdist_wheel for seq-tools: finished with status 'done' Stored in directory: /tmp/tmpvs1zyylh Successfully built seq-tools Cleaning up... Removing source in /tmp/pip-build-2ws7bv2w/seq-tools