Collecting topiary==2.0.0 1 location(s) to search for versions of topiary: * https://pypi.python.org/simple/topiary/ Getting page https://pypi.python.org/simple/topiary/ Analyzing links from page https://pypi.python.org/simple/topiary/ Found link https://pypi.python.org/packages/03/98/eaceb57e744d5324a242e9b18e2e137e6c6960dca63c5cbfdb462d60e79f/topiary-0.0.6.tar.gz#md5=57aacdb668a89830eb0db8c4d8f0ffd3 (from https://pypi.python.org/simple/topiary/), version: 0.0.6 Found link https://pypi.python.org/packages/0c/18/4fce39e2b363296333b7833c4624ad0fdfc799aab2771af18d5b13006be0/topiary-0.0.21.tar.gz#md5=7a54d9229f2ddc4f1c896f93c93044ae (from https://pypi.python.org/simple/topiary/), version: 0.0.21 Found link https://pypi.python.org/packages/0e/4a/fbc62d6da7aeb1fa64fabd8d7f0836f5a079b0a098d9b2812b3158070672/topiary-0.0.19.tar.gz#md5=de073fa33fabc688455c366e7a66808a (from https://pypi.python.org/simple/topiary/), version: 0.0.19 Found link https://pypi.python.org/packages/19/7f/bf4d188a19634549a26b6b995a60146510435b5687a4c9afa5af01da4215/topiary-0.0.9.tar.gz#md5=be9f67bcb2354743fcf72a6ff57fc60a (from https://pypi.python.org/simple/topiary/), version: 0.0.9 Found link https://pypi.python.org/packages/1a/e9/c5aad02530e1d64fc410dfc2e4eb32d4ace35d2367b6dbf9927b655e2af4/topiary-0.0.14.tar.gz#md5=065fff1fbc424063e804b5bc8854ccd1 (from https://pypi.python.org/simple/topiary/), version: 0.0.14 Found link https://pypi.python.org/packages/29/a2/eb5e9dec8dafc167f24cd4234a8d75b815411ea8b6af4724e8218038d52e/topiary-0.0.2.tar.gz#md5=6f5e20fd0b0a2a3e648696a43354d6bf (from https://pypi.python.org/simple/topiary/), version: 0.0.2 Found link https://pypi.python.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz#md5=8771195e4a3e4263a01902e4df654fae (from https://pypi.python.org/simple/topiary/), version: 0.0.0 Found link https://pypi.python.org/packages/40/7f/4c423389757bae0b47f7640d8b66bf9d5f5bbf6e387faa2dfa34fa0b809e/topiary-0.0.1.tar.gz#md5=26f9571387fb3e7330ad6d79ce19769c (from https://pypi.python.org/simple/topiary/), version: 0.0.1 Found link https://pypi.python.org/packages/42/e4/e8450b31eac4229cfbe29bc87b8594ac1b03bc06f3272996cb3d50038c15/topiary-0.0.3.tar.gz#md5=6311e9bfd99c9ea783534a2c9fef4dea (from https://pypi.python.org/simple/topiary/), version: 0.0.3 Found link https://pypi.python.org/packages/49/3a/ea68dc25b9c97e7fabecbbb5138c7be94eb3a9426f211db68f4c1ecd9ed4/topiary-0.0.16.tar.gz#md5=f998889d87be3e862359f2aa7fe3c26f (from https://pypi.python.org/simple/topiary/), version: 0.0.16 Found link https://pypi.python.org/packages/4f/8d/cfcda3d246e6a9dfd10fcda4de1b3cba171ffcf0508d3b8807f02765af1b/topiary-0.1.0.tar.gz#md5=ac584feb3b2dc7830c702cf70ee3318d (from https://pypi.python.org/simple/topiary/), version: 0.1.0 Found link https://pypi.python.org/packages/52/f0/5083f0d77ce33732322b146ed0088bee776750a07d1ef52b65a5c4f3fe21/topiary-2.0.0.tar.gz#md5=013e00f30c4db8ede4fd455792875733 (from https://pypi.python.org/simple/topiary/), version: 2.0.0 Found link https://pypi.python.org/packages/66/cd/6713c0c5cb9b5902943586a918f000ad4521e5d24a4ff32ee99b1d211167/topiary-1.2.1.tar.gz#md5=b12e70c97743e490a736235cc26269b6 (from https://pypi.python.org/simple/topiary/), version: 1.2.1 Found link https://pypi.python.org/packages/6a/a5/a8446cebca687d391bbb67d26873adbbfa878d9b057a613f7756568911bb/topiary-0.0.8.tar.gz#md5=a5f724178180633e701cc603172b8487 (from https://pypi.python.org/simple/topiary/), version: 0.0.8 Found link https://pypi.python.org/packages/6b/51/a9a4af9588db8d60bd38ca7851f85308bde8023ce09b12cb61687f68e2f6/topiary-0.0.17.tar.gz#md5=186847d3b7a587c8a47c1081fedd80ce (from https://pypi.python.org/simple/topiary/), version: 0.0.17 Found link https://pypi.python.org/packages/6b/a2/9ac4d08a189dfa90e576d8bf8769249673d2dfd9cd2a9464674c56892501/topiary-0.0.7.tar.gz#md5=f6c1d84f110c6f0c9898701f9732ae8d (from https://pypi.python.org/simple/topiary/), version: 0.0.7 Found link https://pypi.python.org/packages/8a/f7/6b7e6863daa1cb5125420e68e85c4da83490b0700a0cd743ff0505f49df0/topiary-0.0.20.tar.gz#md5=7c23864a66098de05120f6b442358e1f (from https://pypi.python.org/simple/topiary/), version: 0.0.20 Found link https://pypi.python.org/packages/92/85/fd3447ea12115e2274295bbdd728707a1e3870cf5e32dd63caa5ce17e0b2/topiary-0.0.5.tar.gz#md5=f3ee9ed6f7fbd12ee4d4e075e2ec5ee8 (from https://pypi.python.org/simple/topiary/), version: 0.0.5 Found link https://pypi.python.org/packages/b1/4f/8410302ba478be063f5ba41028ad88db4dde24f4a2096643b9c55109b176/topiary-0.0.15.tar.gz#md5=bde6936603fdf0cfd76bb3d51fe5980d (from https://pypi.python.org/simple/topiary/), version: 0.0.15 Found link https://pypi.python.org/packages/bb/b2/e507265c740fa360bf05b47f9e957ad5f8803233dd7c892979ee6d772e9b/topiary-0.0.10.tar.gz#md5=b515470797e29552249ff92b2ec7d83e (from https://pypi.python.org/simple/topiary/), version: 0.0.10 Found link https://pypi.python.org/packages/bc/ea/f0de38c2ba7970d28fe8404cd7bd32b2d041e7d3dc2027d7efff390e213c/topiary-0.0.4.tar.gz#md5=c2ae5ea0f08b35f9755722a9f0d88573 (from https://pypi.python.org/simple/topiary/), version: 0.0.4 Found link https://pypi.python.org/packages/c4/6e/c3e2335ab2b5be7be8772ddd20bb158915ce5fdd0b11f8d55dea779638de/topiary-0.1.2.tar.gz#md5=6e7948189a133f652296f6e2218f546f (from https://pypi.python.org/simple/topiary/), version: 0.1.2 Found link https://pypi.python.org/packages/ca/3c/01cb5d9e817ff2195d4579330d8b2d8b42e890d27109c8dd671253ea0a25/topiary-0.0.18.tar.gz#md5=f12ab03340cb2bc8b411a9c5cf7cb29c (from https://pypi.python.org/simple/topiary/), version: 0.0.18 Found link https://pypi.python.org/packages/d3/fe/3b790a8e6401f8d7cfb50de1a4005e237f6c91ffa541c41524520c71e881/topiary-1.2.0.tar.gz#md5=40ad1f826ddcf265a7dea4cd5aed87b2 (from https://pypi.python.org/simple/topiary/), version: 1.2.0 Found link https://pypi.python.org/packages/d8/d8/d85f730eddd20a2df9d378a4d58a96d39e700c4fa109f1ead1a8f2509170/topiary-0.0.13.tar.gz#md5=da7899bbaca15b243a925ab794da62e2 (from https://pypi.python.org/simple/topiary/), version: 0.0.13 Found link https://pypi.python.org/packages/f4/24/61c55b78e2597bbec4941edcf4161328f725f96836e20dd3b55e4d9d5fc3/topiary-0.1.1-0.tar.gz#md5=bef7fb165188b9291cb85f175bee21ce (from https://pypi.python.org/simple/topiary/), version: 0.1.1-0 Using version 2.0.0 (newest of versions: 2.0.0) Downloading topiary-2.0.0.tar.gz Downloading from URL https://pypi.python.org/packages/52/f0/5083f0d77ce33732322b146ed0088bee776750a07d1ef52b65a5c4f3fe21/topiary-2.0.0.tar.gz#md5=013e00f30c4db8ede4fd455792875733 (from https://pypi.python.org/simple/topiary/) Running setup.py (path:/tmp/pip-build-dldks1gs/topiary/setup.py) egg_info for package topiary Running command python setup.py egg_info Conversion of long_description from MD to reStructuredText failed... running egg_info creating pip-egg-info/topiary.egg-info writing dependency_links to pip-egg-info/topiary.egg-info/dependency_links.txt writing top-level names to pip-egg-info/topiary.egg-info/top_level.txt writing requirements to pip-egg-info/topiary.egg-info/requires.txt writing entry points to pip-egg-info/topiary.egg-info/entry_points.txt writing pip-egg-info/topiary.egg-info/PKG-INFO writing manifest file 'pip-egg-info/topiary.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/topiary.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/topiary.egg-info/SOURCES.txt' Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Source in /tmp/pip-build-dldks1gs/topiary has version 2.0.0, which satisfies requirement topiary==2.0.0 from https://pypi.python.org/packages/52/f0/5083f0d77ce33732322b146ed0088bee776750a07d1ef52b65a5c4f3fe21/topiary-2.0.0.tar.gz#md5=013e00f30c4db8ede4fd455792875733 Building wheels for collected packages: topiary Running setup.py bdist_wheel for topiary: started Destination directory: /tmp/tmpl6h26nn1pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-dldks1gs/topiary/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpl6h26nn1pip-wheel- Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Conversion of long_description from MD to reStructuredText failed... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/test copying test/test_epitope_filters.py -> build/lib/test copying test/test_args_outputs.py -> build/lib/test copying test/test_contains_mutant_residues.py -> build/lib/test copying test/test_mutant_epitope_predictions_class2.py -> build/lib/test copying test/data.py -> build/lib/test copying test/test_dataframe.py -> build/lib/test copying test/test_rna_helpers.py -> build/lib/test copying test/test_load_cufflinks_fpkm.py -> build/lib/test copying test/__init__.py -> build/lib/test copying test/test_padding.py -> build/lib/test copying test/test_peptide_mutation_interval.py -> build/lib/test copying test/test_variant_expression_filters.py -> build/lib/test copying test/test_load_stringtie_gtf_fpkm.py -> build/lib/test copying test/test_effect_expression_filters.py -> build/lib/test copying test/test_epitopes_from_commandline_args.py -> build/lib/test copying test/test_mutant_epitope_predictions_class1.py -> build/lib/test copying test/test_lazy_ligandome_dict.py -> build/lib/test creating build/lib/topiary copying topiary/lazy_ligandome_dict.py -> build/lib/topiary copying topiary/predict_epitopes.py -> build/lib/topiary copying topiary/epitope_prediction.py -> build/lib/topiary copying topiary/filters.py -> build/lib/topiary copying topiary/__init__.py -> build/lib/topiary copying topiary/sequence_helpers.py -> build/lib/topiary copying topiary/converters.py -> build/lib/topiary creating build/lib/topiary/rna copying topiary/rna/cufflinks.py -> build/lib/topiary/rna copying topiary/rna/common.py -> build/lib/topiary/rna copying topiary/rna/__init__.py -> build/lib/topiary/rna copying topiary/rna/gtf.py -> build/lib/topiary/rna creating build/lib/topiary/cli copying topiary/cli/filtering.py -> build/lib/topiary/cli copying topiary/cli/args.py -> build/lib/topiary/cli copying topiary/cli/outputs.py -> build/lib/topiary/cli copying topiary/cli/sequence.py -> build/lib/topiary/cli copying topiary/cli/rna.py -> build/lib/topiary/cli copying topiary/cli/__init__.py -> build/lib/topiary/cli copying topiary/cli/script.py -> build/lib/topiary/cli copying topiary/cli/errors.py -> build/lib/topiary/cli installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_epitope_filters.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/data.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_dataframe.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/__init__.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_padding.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_lazy_ligandome_dict.py -> build/bdist.linux-armv7l/wheel/test creating build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/lazy_ligandome_dict.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/predict_epitopes.py -> build/bdist.linux-armv7l/wheel/topiary creating build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/epitope_prediction.py -> build/bdist.linux-armv7l/wheel/topiary creating build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/converters.py -> build/bdist.linux-armv7l/wheel/topiary running install_egg_info running egg_info writing dependency_links to topiary.egg-info/dependency_links.txt writing topiary.egg-info/PKG-INFO writing entry points to topiary.egg-info/entry_points.txt writing top-level names to topiary.egg-info/top_level.txt writing requirements to topiary.egg-info/requires.txt reading manifest file 'topiary.egg-info/SOURCES.txt' writing manifest file 'topiary.egg-info/SOURCES.txt' Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/topiary-2.0.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/topiary-2.0.0.dist-info/WHEEL Running setup.py bdist_wheel for topiary: finished with status 'done' Stored in directory: /tmp/tmpocmtaf2p Successfully built topiary Cleaning up... Removing source in /tmp/pip-build-dldks1gs/topiary