Collecting CNVkit==0.9.1 1 location(s) to search for versions of CNVkit: * https://pypi.python.org/simple/cnvkit/ Getting page https://pypi.python.org/simple/cnvkit/ Analyzing links from page https://pypi.python.org/simple/cnvkit/ Found link https://pypi.python.org/packages/0a/b6/4b3691109140a2c4b1e5088ea5c5647757c69b61668ecbbac99c1afe4c79/CNVkit-0.2.2.tar.gz#md5=63deef9b34b03a9419c7e3f672706e87 (from https://pypi.python.org/simple/cnvkit/), version: 0.2.2 Found link https://pypi.python.org/packages/17/e2/6620f157dc63466bf87b9a572f3601393388f198a6d4890184dfae8d4dba/CNVkit-0.2.3.tar.gz#md5=a9a3631caeee21a6e1d1c8e2862fe1fb (from https://pypi.python.org/simple/cnvkit/), version: 0.2.3 Found link https://pypi.python.org/packages/1c/af/83fb0dc51302827a407a898172220ebcfe6467c94f5f0585d64f4d25edaa/CNVkit-0.7.9.tar.gz#md5=a1034585d417eff68b3f3da99d1eb5a8 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.9 Found link https://pypi.python.org/packages/24/4f/ad111db335d76134fe1bdf4834da59a97c069d906aac54344ecdf6c7f5b5/CNVkit-0.9.0.tar.gz#md5=efae96c365f6aade58b69dabc582c9b2 (from https://pypi.python.org/simple/cnvkit/), version: 0.9.0 Found link https://pypi.python.org/packages/30/c0/73a2d9150e51f612454978a457b92d959dd595e369838152ee25691883c7/CNVkit-0.6.0.tar.gz#md5=64ee1f769f8d52a7b2310bde6aa1c893 (from https://pypi.python.org/simple/cnvkit/), version: 0.6.0 Found link https://pypi.python.org/packages/32/77/621ff6d47c503ccded6fa853e0cd472afed8e7977b0b34ed39172d5bc345/CNVkit-0.2.tar.gz#md5=8631c005ee46cab55f92d618abfee232 (from https://pypi.python.org/simple/cnvkit/), version: 0.2 Found link https://pypi.python.org/packages/34/b5/245ffadbbe12eded33141f0d5679e0ace537b4ea994cfb3b9be4e3c96b14/CNVkit-0.4.0.tar.gz#md5=6bf2b80772ce1e258730f5c07c76b478 (from https://pypi.python.org/simple/cnvkit/), version: 0.4.0 Found link https://pypi.python.org/packages/49/05/23ed310f7478a8f75d5f5e7beea701c5ea38e2925444a6c08d6ade587ac8/CNVkit-0.8.3.tar.gz#md5=515e4892ccca5ef52b5c734280afeefe (from https://pypi.python.org/simple/cnvkit/), version: 0.8.3 Found link https://pypi.python.org/packages/52/6a/118af6fdc7183ddd1359937bd58211faa1e1977b1721bbca1b68aa70a0a6/CNVkit-0.7.7.tar.gz#md5=ebdf7dc9d903053bb97441a626d9c253 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.7 Found link https://pypi.python.org/packages/57/d5/d79279b28721dedb1454904927226fca956c97a240713116d8d13f73b5e1/CNVkit-0.6.1.tar.gz#md5=84c4833ce42a8b90f18e5af9b14f25b8 (from https://pypi.python.org/simple/cnvkit/), version: 0.6.1 Found link https://pypi.python.org/packages/5b/09/0c07291435665f9336dcda9b9ee6578da925b73a26b7583f3996f5feeca7/CNVkit-0.9.1.tar.gz#md5=c216738f950093f86d2cd4176c1478b8 (from https://pypi.python.org/simple/cnvkit/), version: 0.9.1 Found link https://pypi.python.org/packages/5c/8b/13bb9d9c7aded4fc72ef8826e6a753bf63803abcc780d7ddf472f4e5bfe7/CNVkit-0.2.4.tar.gz#md5=ba90551316e61ab1165b7bd4b32015f0 (from https://pypi.python.org/simple/cnvkit/), version: 0.2.4 Found link https://pypi.python.org/packages/65/bd/78d0702de271f06c492a9b502980154394c91028ce9afcf31df4081e0d63/CNVkit-0.7.11.tar.gz#md5=985c2a0d58462a3a922d57b4c97f96da (from https://pypi.python.org/simple/cnvkit/), version: 0.7.11 Found link https://pypi.python.org/packages/6b/f0/98971dfde24cc0ebeab120a907a9ad48a4d5e8d8779904dc51d3a6e5e5c0/CNVkit-0.7.6.tar.gz#md5=f7f7502906c961748ab69a96b2c23e3f (from https://pypi.python.org/simple/cnvkit/), version: 0.7.6 Found link https://pypi.python.org/packages/6c/d4/72a550e603acbb6160dcb9f9ce740e123328ddd5764f04b20c6e59dc27c7/CNVkit-0.7.5.tar.gz#md5=3e017be37a9f201f62b79900c4b2f216 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.5 Found link https://pypi.python.org/packages/6f/96/af23dbe329fce0f0b1124d997d2f895c7cf05119e854aecc764b452ee236/CNVkit-0.7.10.tar.gz#md5=fe32af0ca8d5a3a21f799a7039f5d6e9 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.10 Found link https://pypi.python.org/packages/71/ff/dbcf0245a0bf19f6ba8d2eaa116e49b5722cb5baec0d67d1102efc464c7d/CNVkit-0.2.1.tar.gz#md5=55d2a66b4c8f2b51ab6b3a5d43282cef (from https://pypi.python.org/simple/cnvkit/), version: 0.2.1 Found link https://pypi.python.org/packages/82/4e/86ed817c29e3eed784ccdb312f75487527c60db801bf074a62308425bf3b/CNVkit-0.7.0.tar.gz#md5=cc5523981d832ecbf9a8b037f42d65bb (from https://pypi.python.org/simple/cnvkit/), version: 0.7.0 Found link https://pypi.python.org/packages/8e/c3/f04accf7a1eb4d07a3b043bd5e55f9fe19c71f9755becec69f805dc5d41e/CNVkit-0.7.1.tar.gz#md5=f31f05f1471dea1c42b9727d3f1ca734 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.1 Found link https://pypi.python.org/packages/97/78/4ac941c956e24d81c29b41d96a1ec74f2810e5047079432f6a1ab77504af/CNVkit-0.3.4.tar.gz#md5=282a247d4ce0bc39101761db55fbf242 (from https://pypi.python.org/simple/cnvkit/), version: 0.3.4 Found link https://pypi.python.org/packages/b0/21/3cce6c5788ede1207866fce30a54222bd45803f97100bc042c65ec7f7006/CNVkit-0.3.5.tar.gz#md5=c95ddad501dd76161af64e19b1261f15 (from https://pypi.python.org/simple/cnvkit/), version: 0.3.5 Found link https://pypi.python.org/packages/b1/51/9033a886b88b9bccffacadc50e5745cc5b345bcf5eac43973b29cb73b669/CNVkit-0.4.1.tar.gz#md5=4c4241966a27a28cdf1c3bfd6eeca47b (from https://pypi.python.org/simple/cnvkit/), version: 0.4.1 Found link https://pypi.python.org/packages/b1/ed/72ba9f4e1c5d615af3c23bf44ef01797b72b3d3cfbadf5b08658888ded42/CNVkit-0.7.8.tar.gz#md5=54014fe85c6453bfd0ffac04a5c563fd (from https://pypi.python.org/simple/cnvkit/), version: 0.7.8 Found link https://pypi.python.org/packages/b6/13/c084767ea617bf413a78d97b885949661f51d968def9d1b050c2880883bf/CNVkit-0.8.0.tar.gz#md5=2a5dce3836162a2240042bb8bda80688 (from https://pypi.python.org/simple/cnvkit/), version: 0.8.0 Found link https://pypi.python.org/packages/ba/60/bb99adaee7c90d6437e095f564d842ab82515bc71018ae048a2d02023e89/CNVkit-0.7.4.tar.gz#md5=a2b98481f719d2c0ee1b8cd44d3f3377 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.4 Found link https://pypi.python.org/packages/ba/d4/53e991f7ed5484327ac2960796dde2b0df0481655943e6258d7df300d108/CNVkit-0.5.2.tar.gz#md5=932858b455ee0f7d713d2084b8ba6a4c (from https://pypi.python.org/simple/cnvkit/), version: 0.5.2 Found link https://pypi.python.org/packages/bb/05/336b14341a942aeb40e4692f75e05d8cc35dc6ef5c8524df6c91a56b1eba/CNVkit-0.8.5.tar.gz#md5=eb73600ad48daadc7db11bae10e77c4a (from https://pypi.python.org/simple/cnvkit/), version: 0.8.5 Found link https://pypi.python.org/packages/bc/7b/65347ea640a9cbc48031a6b78754de6ee89963c7bffb4e55596c606649b7/CNVkit-0.7.2.tar.gz#md5=0192183ccc688bdfc71583b169d37e4e (from https://pypi.python.org/simple/cnvkit/), version: 0.7.2 Found link https://pypi.python.org/packages/c0/08/9f5d1761025faebf8e22ed100862b15340a5148990d5f2ee2ef91c0995ac/CNVkit-0.2.5.tar.gz#md5=e2e6bc7d370ffd889234a3348e22a981 (from https://pypi.python.org/simple/cnvkit/), version: 0.2.5 Found link https://pypi.python.org/packages/c0/91/87fe6e9784ac858261098649d428191aecc3f1f1b2acd52d6b6228a57cd0/CNVkit-0.8.4.tar.gz#md5=0a0c40f759a503a793ff922f7082785c (from https://pypi.python.org/simple/cnvkit/), version: 0.8.4 Found link https://pypi.python.org/packages/c7/f4/4b6880cac43e5aae09542a5316cd77a359a778e3a6964b5a5a8c325397db/CNVkit-0.8.1.tar.gz#md5=c7292da3537dae1fddf80fad992a6709 (from https://pypi.python.org/simple/cnvkit/), version: 0.8.1 Found link https://pypi.python.org/packages/c8/c1/729f012a6eff3ec15ab6bc7fa750b21c7007c7339ff4774eebe26779a268/CNVkit-0.3.1.tar.gz#md5=4ae3e035785216d77e1eaf09a399b652 (from https://pypi.python.org/simple/cnvkit/), version: 0.3.1 Found link https://pypi.python.org/packages/de/2d/7a0e31c57af9ca71e9e06ed0b7389ce928592ed68711b3ea4fbbcc6148b0/CNVkit-0.5.1.tar.gz#md5=eeb91521aca3b077b694116a12206626 (from https://pypi.python.org/simple/cnvkit/), version: 0.5.1 Found link https://pypi.python.org/packages/e1/53/4ae40544a7f4144a47a657ff63d002a18a7c12eb0d1838657ee84883f0af/CNVkit-0.3.3.tar.gz#md5=7d253c46ac45e8d949bf0a771442d311 (from https://pypi.python.org/simple/cnvkit/), version: 0.3.3 Found link https://pypi.python.org/packages/e9/2f/88b099e9c539e0da2197229f0b3c6847bffce3595c65d55c68db73e3b357/CNVkit-0.5.0.tar.gz#md5=90e8bb79c93e5194f43d16f26d0398eb (from https://pypi.python.org/simple/cnvkit/), version: 0.5.0 Found link https://pypi.python.org/packages/f3/58/34ac43541c0fc3d1817b3109c54e865001176c340cab8beb30a8aa220096/CNVkit-0.8.2.tar.gz#md5=409484b966bb36985cc360a3c30b2b68 (from https://pypi.python.org/simple/cnvkit/), version: 0.8.2 Found link https://pypi.python.org/packages/f4/5c/5189ced8d6e13dfbdb4c06f727296ead4775f1b146d283d4118b3b5952af/CNVkit-0.3.0.tar.gz#md5=2f3d2e00601e1f28fd51471bc3904a08 (from https://pypi.python.org/simple/cnvkit/), version: 0.3.0 Found link https://pypi.python.org/packages/f4/b1/177b9324042bf94b29ee3bf890eb9337c33210615ac793d950bd61622e5e/CNVkit-0.3.2.tar.gz#md5=39b679f38cefe36c826bd92bf1717c97 (from https://pypi.python.org/simple/cnvkit/), version: 0.3.2 Found link https://pypi.python.org/packages/f6/3a/e0992c81352eff90eff0fc169dceeba905d58ddd2894de9c1dfa4da8a58d/CNVkit-0.7.3.tar.gz#md5=39af2543750f74e2322274509a78f303 (from https://pypi.python.org/simple/cnvkit/), version: 0.7.3 Using version 0.9.1 (newest of versions: 0.9.1) Downloading CNVkit-0.9.1.tar.gz (143kB) Downloading from URL https://pypi.python.org/packages/5b/09/0c07291435665f9336dcda9b9ee6578da925b73a26b7583f3996f5feeca7/CNVkit-0.9.1.tar.gz#md5=c216738f950093f86d2cd4176c1478b8 (from https://pypi.python.org/simple/cnvkit/) Running setup.py (path:/tmp/pip-build-87pwk4ha/CNVkit/setup.py) egg_info for package CNVkit Running command python setup.py egg_info running egg_info creating pip-egg-info/CNVkit.egg-info writing pip-egg-info/CNVkit.egg-info/PKG-INFO writing requirements to pip-egg-info/CNVkit.egg-info/requires.txt writing dependency_links to pip-egg-info/CNVkit.egg-info/dependency_links.txt writing top-level names to pip-egg-info/CNVkit.egg-info/top_level.txt writing manifest file 'pip-egg-info/CNVkit.egg-info/SOURCES.txt' warning: manifest_maker: standard file '-c' not found reading manifest file 'pip-egg-info/CNVkit.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/CNVkit.egg-info/SOURCES.txt' Source in /tmp/pip-build-87pwk4ha/CNVkit has version 0.9.1, which satisfies requirement CNVkit==0.9.1 from https://pypi.python.org/packages/5b/09/0c07291435665f9336dcda9b9ee6578da925b73a26b7583f3996f5feeca7/CNVkit-0.9.1.tar.gz#md5=c216738f950093f86d2cd4176c1478b8 Building wheels for collected packages: CNVkit Running setup.py bdist_wheel for CNVkit: started Destination directory: /tmp/tmpouwbmwympip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-87pwk4ha/CNVkit/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpouwbmwympip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/cnvlib copying cnvlib/autobin.py -> build/lib/cnvlib copying cnvlib/access.py -> build/lib/cnvlib copying cnvlib/metrics.py -> build/lib/cnvlib copying cnvlib/scatter.py -> build/lib/cnvlib copying cnvlib/heatmap.py -> build/lib/cnvlib copying cnvlib/segfilters.py -> build/lib/cnvlib copying cnvlib/antitarget.py -> build/lib/cnvlib copying cnvlib/cnary.py -> build/lib/cnvlib copying cnvlib/diagram.py -> build/lib/cnvlib copying cnvlib/jenks.py -> build/lib/cnvlib copying cnvlib/coverage.py -> build/lib/cnvlib copying cnvlib/fix.py -> build/lib/cnvlib copying cnvlib/batch.py -> build/lib/cnvlib copying cnvlib/export.py -> build/lib/cnvlib copying cnvlib/vary.py -> build/lib/cnvlib copying cnvlib/descriptives.py -> build/lib/cnvlib copying cnvlib/_version.py -> build/lib/cnvlib copying cnvlib/plots.py -> build/lib/cnvlib copying cnvlib/cmdutil.py -> build/lib/cnvlib copying cnvlib/importers.py -> build/lib/cnvlib copying cnvlib/target.py -> build/lib/cnvlib copying cnvlib/reference.py -> build/lib/cnvlib copying cnvlib/params.py -> build/lib/cnvlib copying cnvlib/__init__.py -> build/lib/cnvlib copying cnvlib/parallel.py -> build/lib/cnvlib copying cnvlib/reports.py -> build/lib/cnvlib copying cnvlib/commands.py -> build/lib/cnvlib copying cnvlib/call.py -> build/lib/cnvlib copying cnvlib/samutil.py -> build/lib/cnvlib copying cnvlib/smoothing.py -> build/lib/cnvlib copying cnvlib/core.py -> build/lib/cnvlib creating build/lib/cnvlib/segmentation copying cnvlib/segmentation/haar.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/__init__.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/cbs.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/none.py -> build/lib/cnvlib/segmentation copying cnvlib/segmentation/flasso.py -> build/lib/cnvlib/segmentation creating build/lib/skgenome copying skgenome/merge.py -> build/lib/skgenome copying skgenome/gary.py -> build/lib/skgenome copying skgenome/subdivide.py -> build/lib/skgenome copying skgenome/intersect.py -> build/lib/skgenome copying skgenome/__init__.py -> build/lib/skgenome copying skgenome/combiners.py -> build/lib/skgenome copying skgenome/subtract.py -> build/lib/skgenome copying skgenome/rangelabel.py -> build/lib/skgenome copying skgenome/chromsort.py -> build/lib/skgenome creating build/lib/skgenome/tabio copying skgenome/tabio/bedio.py -> build/lib/skgenome/tabio copying skgenome/tabio/simplevcf.py -> build/lib/skgenome/tabio copying skgenome/tabio/seqdict.py -> build/lib/skgenome/tabio copying skgenome/tabio/picard.py -> build/lib/skgenome/tabio copying skgenome/tabio/genepred.py -> build/lib/skgenome/tabio copying skgenome/tabio/textcoord.py -> build/lib/skgenome/tabio copying skgenome/tabio/seg.py -> build/lib/skgenome/tabio copying skgenome/tabio/gff.py -> build/lib/skgenome/tabio copying skgenome/tabio/__init__.py -> build/lib/skgenome/tabio copying skgenome/tabio/util.py -> build/lib/skgenome/tabio copying skgenome/tabio/tab.py -> build/lib/skgenome/tabio copying skgenome/tabio/vcfio.py -> build/lib/skgenome/tabio running build_scripts creating build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/cnvkit.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/cnv_updater.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/cnv_annotate.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/cnv_ztest.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/skg_convert.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/guess_baits.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/reference2targets.py -> build/scripts-3.4 copying and adjusting /tmp/pip-build-87pwk4ha/CNVkit/scripts/refFlat2bed.py -> build/scripts-3.4 changing mode of build/scripts-3.4/cnvkit.py from 644 to 755 changing mode of build/scripts-3.4/cnv_updater.py from 644 to 755 changing mode of build/scripts-3.4/cnv_annotate.py from 644 to 755 changing mode of build/scripts-3.4/cnv_ztest.py from 644 to 755 changing mode of build/scripts-3.4/skg_convert.py from 644 to 755 changing mode of build/scripts-3.4/guess_baits.py from 644 to 755 changing mode of build/scripts-3.4/reference2targets.py from 644 to 755 changing mode of build/scripts-3.4/refFlat2bed.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/autobin.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/access.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/metrics.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/scatter.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-armv7l/wheel/cnvlib creating build/bdist.linux-armv7l/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation copying build/lib/cnvlib/segmentation/flasso.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/cnary.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/diagram.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/jenks.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/coverage.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/fix.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/batch.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/export.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/vary.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/_version.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/plots.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/importers.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/target.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/reference.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/params.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/parallel.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/reports.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/commands.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/call.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/samutil.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-armv7l/wheel/cnvlib copying build/lib/cnvlib/core.py -> build/bdist.linux-armv7l/wheel/cnvlib creating build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/merge.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/gary.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/subdivide.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/intersect.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome creating build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/simplevcf.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio copying build/lib/skgenome/combiners.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/subtract.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-armv7l/wheel/skgenome copying build/lib/skgenome/chromsort.py -> build/bdist.linux-armv7l/wheel/skgenome running install_egg_info running egg_info writing top-level names to CNVkit.egg-info/top_level.txt writing requirements to CNVkit.egg-info/requires.txt writing dependency_links to CNVkit.egg-info/dependency_links.txt writing CNVkit.egg-info/PKG-INFO warning: manifest_maker: standard file '-c' not found reading manifest file 'CNVkit.egg-info/SOURCES.txt' writing manifest file 'CNVkit.egg-info/SOURCES.txt' Copying CNVkit.egg-info to build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/cnv_updater.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/cnv_annotate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/cnv_ztest.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/skg_convert.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/guess_baits.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/reference2targets.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/refFlat2bed.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts copying build/scripts-3.4/cnvkit.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/cnv_updater.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/cnv_annotate.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/cnv_ztest.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/skg_convert.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/guess_baits.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/reference2targets.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/refFlat2bed.py to 755 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.data/scripts/cnvkit.py to 755 creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.1.dist-info/WHEEL creating '/tmp/tmpouwbmwympip-wheel-/CNVkit-0.9.1-py2.py3-none-any.whl' and adding '.' to it adding 'CNVkit-0.9.1.data/scripts/cnv_annotate.py' adding 'CNVkit-0.9.1.data/scripts/cnv_updater.py' adding 'CNVkit-0.9.1.data/scripts/cnv_ztest.py' adding 'CNVkit-0.9.1.data/scripts/cnvkit.py' adding 'CNVkit-0.9.1.data/scripts/guess_baits.py' adding 'CNVkit-0.9.1.data/scripts/refFlat2bed.py' adding 'CNVkit-0.9.1.data/scripts/reference2targets.py' adding 'CNVkit-0.9.1.data/scripts/skg_convert.py' adding 'cnvlib/__init__.py' adding 'cnvlib/_version.py' adding 'cnvlib/access.py' adding 'cnvlib/antitarget.py' adding 'cnvlib/autobin.py' adding 'cnvlib/batch.py' adding 'cnvlib/call.py' adding 'cnvlib/cmdutil.py' adding 'cnvlib/cnary.py' adding 'cnvlib/commands.py' adding 'cnvlib/core.py' adding 'cnvlib/coverage.py' adding 'cnvlib/descriptives.py' adding 'cnvlib/diagram.py' adding 'cnvlib/export.py' adding 'cnvlib/fix.py' adding 'cnvlib/heatmap.py' adding 'cnvlib/importers.py' adding 'cnvlib/jenks.py' adding 'cnvlib/metrics.py' adding 'cnvlib/parallel.py' adding 'cnvlib/params.py' adding 'cnvlib/plots.py' adding 'cnvlib/reference.py' adding 'cnvlib/reports.py' adding 'cnvlib/samutil.py' adding 'cnvlib/scatter.py' adding 'cnvlib/segfilters.py' adding 'cnvlib/smoothing.py' adding 'cnvlib/target.py' adding 'cnvlib/vary.py' adding 'cnvlib/segmentation/__init__.py' adding 'cnvlib/segmentation/cbs.py' adding 'cnvlib/segmentation/flasso.py' adding 'cnvlib/segmentation/haar.py' adding 'cnvlib/segmentation/none.py' adding 'skgenome/__init__.py' adding 'skgenome/chromsort.py' adding 'skgenome/combiners.py' adding 'skgenome/gary.py' adding 'skgenome/intersect.py' adding 'skgenome/merge.py' adding 'skgenome/rangelabel.py' adding 'skgenome/subdivide.py' adding 'skgenome/subtract.py' adding 'skgenome/tabio/__init__.py' adding 'skgenome/tabio/bedio.py' adding 'skgenome/tabio/genepred.py' adding 'skgenome/tabio/gff.py' adding 'skgenome/tabio/picard.py' adding 'skgenome/tabio/seg.py' adding 'skgenome/tabio/seqdict.py' adding 'skgenome/tabio/simplevcf.py' adding 'skgenome/tabio/tab.py' adding 'skgenome/tabio/textcoord.py' adding 'skgenome/tabio/util.py' adding 'skgenome/tabio/vcfio.py' adding 'CNVkit-0.9.1.dist-info/DESCRIPTION.rst' adding 'CNVkit-0.9.1.dist-info/metadata.json' adding 'CNVkit-0.9.1.dist-info/top_level.txt' adding 'CNVkit-0.9.1.dist-info/WHEEL' adding 'CNVkit-0.9.1.dist-info/METADATA' adding 'CNVkit-0.9.1.dist-info/RECORD' Running setup.py bdist_wheel for CNVkit: finished with status 'done' Stored in directory: /tmp/tmpd1fy88wg Successfully built CNVkit Cleaning up... Removing source in /tmp/pip-build-87pwk4ha/CNVkit