Collecting assemblerflow==1.0.0rc3 1 location(s) to search for versions of assemblerflow: * https://pypi.python.org/simple/assemblerflow/ Getting page https://pypi.python.org/simple/assemblerflow/ Analyzing links from page https://pypi.python.org/simple/assemblerflow/ Found link https://pypi.python.org/packages/9f/63/d9882751a06d0d43e12d8be490463dd0d65bdb795bb993914c3e0ac36e49/assemblerflow-1.0.0rc3.tar.gz#md5=7c17bc2d865a4cd580d676811a29160d (from https://pypi.python.org/simple/assemblerflow/), version: 1.0.0rc3 Found link https://pypi.python.org/packages/b3/82/0790c1c41ffe8586b04383c5c5596da2e1b8ec7f3254dde8136c4c2a2db8/assemblerflow-1.0.0rc2.tar.gz#md5=031ee51ebef94c10f4fbdf24def2a12e (from https://pypi.python.org/simple/assemblerflow/), version: 1.0.0rc2 Found link https://pypi.python.org/packages/d8/ce/3acdfdfce729e45aa03e445a75b3010aa1eda7c23925ead950e8217b97ff/assemblerflow-1.0.0rc1.tar.gz#md5=dfd007a48cbc85657f58c1e6442cfe7a (from https://pypi.python.org/simple/assemblerflow/), version: 1.0.0rc1 Using version 1.0.0rc3 (newest of versions: 1.0.0rc3) Downloading assemblerflow-1.0.0rc3.tar.gz (52kB) Downloading from URL https://pypi.python.org/packages/9f/63/d9882751a06d0d43e12d8be490463dd0d65bdb795bb993914c3e0ac36e49/assemblerflow-1.0.0rc3.tar.gz#md5=7c17bc2d865a4cd580d676811a29160d (from https://pypi.python.org/simple/assemblerflow/) Running setup.py (path:/tmp/pip-build-yu9cl17s/assemblerflow/setup.py) egg_info for package assemblerflow Running command python setup.py egg_info running egg_info creating pip-egg-info/assemblerflow.egg-info writing dependency_links to pip-egg-info/assemblerflow.egg-info/dependency_links.txt writing entry points to pip-egg-info/assemblerflow.egg-info/entry_points.txt writing top-level names to pip-egg-info/assemblerflow.egg-info/top_level.txt writing pip-egg-info/assemblerflow.egg-info/PKG-INFO writing requirements to pip-egg-info/assemblerflow.egg-info/requires.txt writing manifest file 'pip-egg-info/assemblerflow.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/assemblerflow.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/assemblerflow.egg-info/SOURCES.txt' Source in /tmp/pip-build-yu9cl17s/assemblerflow has version 1.0.0rc3, which satisfies requirement assemblerflow==1.0.0rc3 from https://pypi.python.org/packages/9f/63/d9882751a06d0d43e12d8be490463dd0d65bdb795bb993914c3e0ac36e49/assemblerflow-1.0.0rc3.tar.gz#md5=7c17bc2d865a4cd580d676811a29160d Building wheels for collected packages: assemblerflow Running setup.py bdist_wheel for assemblerflow: started Destination directory: /tmp/tmpaaj46my3pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-yu9cl17s/assemblerflow/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpaaj46my3pip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/assemblerflow copying assemblerflow/assemblerflow.py -> build/lib/assemblerflow copying assemblerflow/__init__.py -> build/lib/assemblerflow creating build/lib/assemblerflow/templates copying assemblerflow/templates/assembly_report.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/process_abricate.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/trimmomatic_report.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/process_assembly_mapping.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/trimmomatic.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/integrity_coverage.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/spades.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/fastqc_report.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/__init__.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/fastqc.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/process_spades.py -> build/lib/assemblerflow/templates copying assemblerflow/templates/pipeline_status.py -> build/lib/assemblerflow/templates creating build/lib/assemblerflow/generator copying assemblerflow/generator/Process.py -> build/lib/assemblerflow/generator copying assemblerflow/generator/HeaderSkeleton.py -> build/lib/assemblerflow/generator copying assemblerflow/generator/__init__.py -> build/lib/assemblerflow/generator copying assemblerflow/nextflow.config -> build/lib/assemblerflow creating build/lib/assemblerflow/bin copying assemblerflow/bin/startup_POST.sh -> build/lib/assemblerflow/bin copying assemblerflow/bin/merge_json.py -> build/lib/assemblerflow/bin copying assemblerflow/bin/report_POST.sh -> build/lib/assemblerflow/bin copying assemblerflow/bin/set_dotfiles.sh -> build/lib/assemblerflow/bin copying assemblerflow/bin/final_POST.sh -> build/lib/assemblerflow/bin creating build/lib/assemblerflow/lib copying assemblerflow/lib/Helper.groovy -> build/lib/assemblerflow/lib copying assemblerflow/lib/CheckParams.groovy -> build/lib/assemblerflow/lib creating build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/abricate.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/trimmomatic.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/fastqc.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/prokka.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/check_coverage.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/trace_compiler.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/assembly_mapping.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/process_spades.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/spades.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/patho_typing.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/report_post.txt -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/post.txt -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/mlst.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/pilon.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/chewbbaca.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/seq_typing.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/integrity_coverage.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/init.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/status_compiler.nf -> build/lib/assemblerflow/generator/templates copying assemblerflow/generator/templates/fastqc_trimmomatic.nf -> build/lib/assemblerflow/generator/templates installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/assemblerflow copying build/lib/assemblerflow/assemblerflow.py -> build/bdist.linux-armv7l/wheel/assemblerflow copying build/lib/assemblerflow/__init__.py -> build/bdist.linux-armv7l/wheel/assemblerflow copying build/lib/assemblerflow/nextflow.config -> build/bdist.linux-armv7l/wheel/assemblerflow creating build/bdist.linux-armv7l/wheel/assemblerflow/bin copying build/lib/assemblerflow/bin/startup_POST.sh -> build/bdist.linux-armv7l/wheel/assemblerflow/bin copying build/lib/assemblerflow/bin/merge_json.py -> build/bdist.linux-armv7l/wheel/assemblerflow/bin copying build/lib/assemblerflow/bin/report_POST.sh -> build/bdist.linux-armv7l/wheel/assemblerflow/bin copying build/lib/assemblerflow/bin/set_dotfiles.sh -> build/bdist.linux-armv7l/wheel/assemblerflow/bin copying build/lib/assemblerflow/bin/final_POST.sh -> build/bdist.linux-armv7l/wheel/assemblerflow/bin creating build/bdist.linux-armv7l/wheel/assemblerflow/lib copying build/lib/assemblerflow/lib/Helper.groovy -> build/bdist.linux-armv7l/wheel/assemblerflow/lib copying build/lib/assemblerflow/lib/CheckParams.groovy -> build/bdist.linux-armv7l/wheel/assemblerflow/lib creating build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/assembly_report.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/process_abricate.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/trimmomatic_report.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/process_assembly_mapping.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/trimmomatic.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/integrity_coverage.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/spades.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/fastqc_report.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/__init__.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/fastqc.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/process_spades.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates copying build/lib/assemblerflow/templates/pipeline_status.py -> build/bdist.linux-armv7l/wheel/assemblerflow/templates creating build/bdist.linux-armv7l/wheel/assemblerflow/generator copying build/lib/assemblerflow/generator/Process.py -> build/bdist.linux-armv7l/wheel/assemblerflow/generator copying build/lib/assemblerflow/generator/HeaderSkeleton.py -> build/bdist.linux-armv7l/wheel/assemblerflow/generator copying build/lib/assemblerflow/generator/__init__.py -> build/bdist.linux-armv7l/wheel/assemblerflow/generator creating build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/abricate.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/trimmomatic.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/fastqc.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/prokka.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/check_coverage.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/trace_compiler.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/assembly_mapping.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/process_spades.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/spades.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/patho_typing.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/report_post.txt -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/post.txt -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/mlst.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/pilon.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/chewbbaca.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/seq_typing.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/integrity_coverage.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/init.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/status_compiler.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates copying build/lib/assemblerflow/generator/templates/fastqc_trimmomatic.nf -> build/bdist.linux-armv7l/wheel/assemblerflow/generator/templates running install_egg_info running egg_info writing top-level names to assemblerflow.egg-info/top_level.txt writing entry points to assemblerflow.egg-info/entry_points.txt writing requirements to assemblerflow.egg-info/requires.txt writing dependency_links to assemblerflow.egg-info/dependency_links.txt writing assemblerflow.egg-info/PKG-INFO reading manifest file 'assemblerflow.egg-info/SOURCES.txt' writing manifest file 'assemblerflow.egg-info/SOURCES.txt' Copying assemblerflow.egg-info to build/bdist.linux-armv7l/wheel/assemblerflow-1.0.0rc3-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/assemblerflow-1.0.0rc3.dist-info/WHEEL Running setup.py bdist_wheel for assemblerflow: finished with status 'done' Stored in directory: /tmp/tmpp066zdg5 Successfully built assemblerflow Cleaning up... Removing source in /tmp/pip-build-yu9cl17s/assemblerflow