Collecting goatools==0.8.2 1 location(s) to search for versions of goatools: * https://pypi.python.org/simple/goatools/ Getting page https://pypi.python.org/simple/goatools/ Analyzing links from page https://pypi.python.org/simple/goatools/ Found link https://pypi.python.org/packages/1e/29/36412d639fe35595276f28f154fde7b1b397f23494b9d1bd91e5ae225bfd/goatools-0.7.10.tar.gz#md5=dc4037706bf3bc0050b0c7a15427796b (from https://pypi.python.org/simple/goatools/), version: 0.7.10 Found link https://pypi.python.org/packages/2f/78/f271731d63b0fbaf6a24c457ed4a3a0114df770d1fc6deb28b9ebbee9b88/goatools-0.6.5.tar.gz#md5=94242ff861892ee10f225e7fa72ff0c6 (from https://pypi.python.org/simple/goatools/), version: 0.6.5 Found link https://pypi.python.org/packages/33/b2/0ff944cb186159988c81b2638e90c60191a2a0350ecba8011c9e4e7dca01/goatools-0.5.4.tar.gz#md5=bc1b57819de71861d0ef3ea42c0c89f2 (from https://pypi.python.org/simple/goatools/), version: 0.5.4 Found link https://pypi.python.org/packages/68/9f/aac469a604a671f2fb8af43abbc9a3baf9f4b89dc121a1069b022a01d33c/goatools-0.4.7.tar.gz#md5=42cad0563773988c99716bdc1a9eb711 (from https://pypi.python.org/simple/goatools/), version: 0.4.7 Found link https://pypi.python.org/packages/69/eb/f8532f9b3740be3754d1fddc2684a7da781ecab6016a61e1e1991dba572c/goatools-0.4.11.tar.gz#md5=eef631877cea7bbad6154f3be3f51452 (from https://pypi.python.org/simple/goatools/), version: 0.4.11 Found link https://pypi.python.org/packages/6a/0c/16078153d246cef8e4868b2123c5ae9f5b1b681e5f3129c94b3a40c328bc/goatools-0.5.5.tar.gz#md5=f49e367465e717ff6a352902d2e1e44f (from https://pypi.python.org/simple/goatools/), version: 0.5.5 Found link https://pypi.python.org/packages/6a/dc/296c532419b754e680bcca9741aa27b19d77cd931bdc02fee992e4178c2d/goatools-0.4.12.tar.gz#md5=12893039b2c49dbf9d96403b55cf0074 (from https://pypi.python.org/simple/goatools/), version: 0.4.12 Found link https://pypi.python.org/packages/78/ac/ef818620ab12fd0a34f61bd7951f7c3aebfb10a8aaa86b9c98d177a661ab/goatools-0.5.8.tar.gz#md5=2fc1a65fcf55b216a31a328c9cb6eef7 (from https://pypi.python.org/simple/goatools/), version: 0.5.8 Found link https://pypi.python.org/packages/7a/0b/93769f4dc0e25718fc166454e054247fb560bb8d7f2282343aa5380433ac/goatools-0.7.9.tar.gz#md5=158843c55252fd1463ddc853a9ea5c69 (from https://pypi.python.org/simple/goatools/), version: 0.7.9 Found link https://pypi.python.org/packages/7b/49/d756b42cf4ff36d8713f51007d3712d249d102106a34c1ee73390f1efd87/goatools-0.5.2.tar.gz#md5=4251f5fc9d215000fe58f9a690d7b845 (from https://pypi.python.org/simple/goatools/), version: 0.5.2 Found link https://pypi.python.org/packages/7c/60/66aa44813a126be67abd4f3bab5c38cb67fca651f761566b4fb6209b4abf/goatools-0.6.4.tar.gz#md5=0f0b5ff462b3b965ba38c44830652ea0 (from https://pypi.python.org/simple/goatools/), version: 0.6.4 Found link https://pypi.python.org/packages/97/f7/3fd9e50d028e3a8ae5105cc587ad348a653a219d53a2e2637387999c7b4a/goatools-0.8.2.tar.gz#md5=8830f1511f9fb87d1f058c8f8653313a (from https://pypi.python.org/simple/goatools/), version: 0.8.2 Found link https://pypi.python.org/packages/b4/a2/4432e2f8c3d73c391f269a272be6e89804fa8603ed13d9168fe55642a38d/goatools-0.7.8.tar.gz#md5=8cf6aeade3a58e07cb8e97e8e8361de0 (from https://pypi.python.org/simple/goatools/), version: 0.7.8 Found link https://pypi.python.org/packages/b7/03/f38acbf06ee21f1fd1657e81cb3c645895d8d84ae6627ef31109eda1f335/goatools-0.5.7.tar.gz#md5=812b8f5e84dfb5353aab1d259e9dba04 (from https://pypi.python.org/simple/goatools/), version: 0.5.7 Found link https://pypi.python.org/packages/ce/e8/34430e4868544b0e2b34c48645c85081474c9968e9816b90e9b544613c19/goatools-0.7.11.tar.gz#md5=f2ab989ec9c4acdd80504b263c3b3188 (from https://pypi.python.org/simple/goatools/), version: 0.7.11 Found link https://pypi.python.org/packages/d2/e2/3941b8abfe4c1319903a4f674f1f5447a6e6c8b19b3f9b3df8dde9445a69/goatools-0.6.3.tar.gz#md5=66904da3756aa3fbda1a9ddf6794260a (from https://pypi.python.org/simple/goatools/), version: 0.6.3 Found link https://pypi.python.org/packages/dc/b5/28e8897cea2a966375d78341075e150cab5b631915f000350e5a8b577e9d/goatools-0.5.6.tar.gz#md5=bdf7f2ec8ab78e6e4737edfc6d5d66dd (from https://pypi.python.org/simple/goatools/), version: 0.5.6 Found link https://pypi.python.org/packages/f0/9c/ee88b7c0b7f309e86761f94d68a79369c57f3d8e352a962c0b62d544f5e0/goatools-0.5.9.tar.gz#md5=2d5f1f9319dbf59850bf92cfa71e92ee (from https://pypi.python.org/simple/goatools/), version: 0.5.9 Found link https://pypi.python.org/packages/f8/e4/d627d159f6652b2bedc3c44335639d77642b17067493b31b53f2ff02236f/goatools-0.6.9.tar.gz#md5=b7a418ea2b4dc4eae1b55e191ad30e04 (from https://pypi.python.org/simple/goatools/), version: 0.6.9 Found link https://pypi.python.org/packages/fe/65/6a88bcd02bb866801aaba653b14b39f02583addc79fd67fcfef485595b61/goatools-0.6.10.tar.gz#md5=7ade4270227d1fd7906accdec68bdc46 (from https://pypi.python.org/simple/goatools/), version: 0.6.10 Using version 0.8.2 (newest of versions: 0.8.2) Downloading goatools-0.8.2.tar.gz (15.0MB) Downloading from URL https://pypi.python.org/packages/97/f7/3fd9e50d028e3a8ae5105cc587ad348a653a219d53a2e2637387999c7b4a/goatools-0.8.2.tar.gz#md5=8830f1511f9fb87d1f058c8f8653313a (from https://pypi.python.org/simple/goatools/) Running setup.py (path:/tmp/pip-build-ze_orqsi/goatools/setup.py) egg_info for package goatools Running command python setup.py egg_info running egg_info creating pip-egg-info/goatools.egg-info writing dependency_links to pip-egg-info/goatools.egg-info/dependency_links.txt writing pip-egg-info/goatools.egg-info/PKG-INFO writing requirements to pip-egg-info/goatools.egg-info/requires.txt writing top-level names to pip-egg-info/goatools.egg-info/top_level.txt writing manifest file 'pip-egg-info/goatools.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/goatools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/goatools.egg-info/SOURCES.txt' Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Source in /tmp/pip-build-ze_orqsi/goatools has version 0.8.2, which satisfies requirement goatools==0.8.2 from https://pypi.python.org/packages/97/f7/3fd9e50d028e3a8ae5105cc587ad348a653a219d53a2e2637387999c7b4a/goatools-0.8.2.tar.gz#md5=8830f1511f9fb87d1f058c8f8653313a Building wheels for collected packages: goatools Running setup.py bdist_wheel for goatools: started Destination directory: /tmp/tmp1y9__fs5pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-ze_orqsi/goatools/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmp1y9__fs5pip-wheel- Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/goatools copying goatools/ratio.py -> build/lib/goatools copying goatools/go_search.py -> build/lib/goatools copying goatools/multiple_testing.py -> build/lib/goatools copying goatools/__init__.py -> build/lib/goatools copying goatools/godag_small.py -> build/lib/goatools copying goatools/rpt_lev_depth.py -> build/lib/goatools copying goatools/wr_tbl.py -> build/lib/goatools copying goatools/semantic.py -> build/lib/goatools copying goatools/mapslim.py -> build/lib/goatools copying goatools/nt_utils.py -> build/lib/goatools copying goatools/associations.py -> build/lib/goatools copying goatools/statsdescribe.py -> build/lib/goatools copying goatools/evidence_codes.py -> build/lib/goatools copying goatools/pvalcalc.py -> build/lib/goatools copying goatools/godag_obosm.py -> build/lib/goatools copying goatools/godag_plot.py -> build/lib/goatools copying goatools/wr_tbl_class.py -> build/lib/goatools copying goatools/go_enrichment.py -> build/lib/goatools copying goatools/base.py -> build/lib/goatools copying goatools/obo_tasks.py -> build/lib/goatools copying goatools/obo_parser.py -> build/lib/goatools creating build/lib/goatools/godag copying goatools/godag/typedef.py -> build/lib/goatools/godag copying goatools/godag/__init__.py -> build/lib/goatools/godag copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag creating build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data copying goatools/test_data/__init__.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data copying goatools/test_data/optional_attrs.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/sections_gjoneska.py -> build/lib/goatools/test_data copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data creating build/lib/goatools/anno copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno copying goatools/anno/__init__.py -> build/lib/goatools/anno copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno creating build/lib/goatools/anno/extensions copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions running egg_info writing requirements to goatools.egg-info/requires.txt writing dependency_links to goatools.egg-info/dependency_links.txt writing goatools.egg-info/PKG-INFO writing top-level names to goatools.egg-info/top_level.txt reading manifest file 'goatools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'goatools.egg-info/SOURCES.txt' creating build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 running build_scripts creating build/scripts-3.4 copying and adjusting scripts/find_enrichment.py -> build/scripts-3.4 copying and adjusting scripts/map_to_slim.py -> build/scripts-3.4 copying scripts/fetch_associations.py -> build/scripts-3.4 copying and adjusting scripts/plot_go_term.py -> build/scripts-3.4 copying scripts/write_hierarchy.py -> build/scripts-3.4 changing mode of build/scripts-3.4/find_enrichment.py from 644 to 755 changing mode of build/scripts-3.4/map_to_slim.py from 644 to 755 changing mode of build/scripts-3.4/plot_go_term.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/ratio.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/go_search.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/multiple_testing.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/__init__.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/godag_small.py -> build/bdist.linux-armv7l/wheel/goatools creating build/bdist.linux-armv7l/wheel/goatools/godag copying build/lib/goatools/godag/typedef.py -> build/bdist.linux-armv7l/wheel/goatools/godag copying build/lib/goatools/godag/__init__.py -> build/bdist.linux-armv7l/wheel/goatools/godag copying build/lib/goatools/godag/obo_optional_attributes.py -> build/bdist.linux-armv7l/wheel/goatools/godag copying build/lib/goatools/rpt_lev_depth.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/wr_tbl.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/semantic.py -> build/bdist.linux-armv7l/wheel/goatools creating build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/optional_attrs.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/goatools/test_data creating build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/README.md -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/nature3102_goea.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/sections_gjoneska.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/test_data/wr_subobo.py -> build/bdist.linux-armv7l/wheel/goatools/test_data copying build/lib/goatools/mapslim.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/nt_utils.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/associations.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/statsdescribe.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/evidence_codes.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/pvalcalc.py -> build/bdist.linux-armv7l/wheel/goatools creating build/bdist.linux-armv7l/wheel/goatools/anno creating build/bdist.linux-armv7l/wheel/goatools/anno/extensions copying build/lib/goatools/anno/extensions/extension.py -> build/bdist.linux-armv7l/wheel/goatools/anno/extensions copying build/lib/goatools/anno/extensions/extensions.py -> build/bdist.linux-armv7l/wheel/goatools/anno/extensions copying build/lib/goatools/anno/extensions/__init__.py -> build/bdist.linux-armv7l/wheel/goatools/anno/extensions copying build/lib/goatools/anno/dnld_ebi_goa.py -> build/bdist.linux-armv7l/wheel/goatools/anno copying build/lib/goatools/anno/__init__.py -> build/bdist.linux-armv7l/wheel/goatools/anno copying build/lib/goatools/anno/gpad_reader.py -> build/bdist.linux-armv7l/wheel/goatools/anno copying build/lib/goatools/anno/gaf_reader.py -> build/bdist.linux-armv7l/wheel/goatools/anno copying build/lib/goatools/godag_obosm.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/godag_plot.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/wr_tbl_class.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/go_enrichment.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/base.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/obo_tasks.py -> build/bdist.linux-armv7l/wheel/goatools copying build/lib/goatools/obo_parser.py -> build/bdist.linux-armv7l/wheel/goatools running install_egg_info Copying goatools.egg-info to build/bdist.linux-armv7l/wheel/goatools-0.8.2-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/goatools-0.8.2.data creating build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts copying build/scripts-3.4/find_enrichment.py -> build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts copying build/scripts-3.4/map_to_slim.py -> build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts copying build/scripts-3.4/fetch_associations.py -> build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts copying build/scripts-3.4/plot_go_term.py -> build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts copying build/scripts-3.4/write_hierarchy.py -> build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts changing mode of build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts/find_enrichment.py to 755 changing mode of build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts/map_to_slim.py to 755 changing mode of build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts/fetch_associations.py to 755 changing mode of build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts/plot_go_term.py to 755 changing mode of build/bdist.linux-armv7l/wheel/goatools-0.8.2.data/scripts/write_hierarchy.py to 755 creating build/bdist.linux-armv7l/wheel/goatools-0.8.2.dist-info/WHEEL Running setup.py bdist_wheel for goatools: finished with status 'done' Stored in directory: /tmp/tmpw64jh357 Successfully built goatools Cleaning up... Removing source in /tmp/pip-build-ze_orqsi/goatools