Collecting sequana==0.6.5.post1 1 location(s) to search for versions of sequana: * https://pypi.python.org/simple/sequana/ Getting page https://pypi.python.org/simple/sequana/ Analyzing links from page https://pypi.python.org/simple/sequana/ Found link https://pypi.python.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz#md5=1c8c1789e479d283afc99fd0702bfb19 (from https://pypi.python.org/simple/sequana/), version: 0.1.6 Found link https://pypi.python.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz#md5=4333f787dbec9697c9195c6b52b72288 (from https://pypi.python.org/simple/sequana/), version: 0.6.4 Found link https://pypi.python.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz#md5=cfccd1a0949346d360a92a6bf34915bb (from https://pypi.python.org/simple/sequana/), version: 0.1.15 Found link https://pypi.python.org/packages/15/00/06438888899f5a1ccc2c5c5af81c6dca2522e731026157e5cb656016bebb/sequana-0.6.5.tar.gz#md5=3a4906ec31090001317d46843f300f1a (from https://pypi.python.org/simple/sequana/), version: 0.6.5 Found link https://pypi.python.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz#md5=d42c9332f54fa8d9285fe8aebce9b0b0 (from https://pypi.python.org/simple/sequana/), version: 0.1.0 Found link https://pypi.python.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz#md5=d29baef2c20a8c020a08ef82dbdaa1f1 (from https://pypi.python.org/simple/sequana/), version: 0.1.9 Found link https://pypi.python.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz#md5=40535ddad2b3ea2913db53f285c268b4 (from https://pypi.python.org/simple/sequana/), version: 0.1.16 Found link https://pypi.python.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz#md5=48cb63258aaf5d200b56b9e0f3c750b8 (from https://pypi.python.org/simple/sequana/), version: 0.0.2 Found link https://pypi.python.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz#md5=bf51e4b598f651c8ab1622e508c41a10 (from https://pypi.python.org/simple/sequana/), version: 0.1.20 Found link https://pypi.python.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz#md5=a7b29a44bf9b96b664fafba6f86bf6ee (from https://pypi.python.org/simple/sequana/), version: 0.6.0 Found link https://pypi.python.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz#md5=906b117a6e66ec8f1380b5f37df3fb14 (from https://pypi.python.org/simple/sequana/), version: 0.4.2 Found link https://pypi.python.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz#md5=09d4e84483e15a10672c67c98650cbfa (from https://pypi.python.org/simple/sequana/), version: 0.1.11 Found link https://pypi.python.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz#md5=5664f19787c15340505b30deaf7a9bc0 (from https://pypi.python.org/simple/sequana/), version: 0.4.0 Found link https://pypi.python.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz#md5=07968e283250f82d92a995238d2e908c (from https://pypi.python.org/simple/sequana/), version: 0.1.10 Found link https://pypi.python.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz#md5=cec1aa339abf4df7c32012d074100eac (from https://pypi.python.org/simple/sequana/), version: 0.1.17.1 Found link https://pypi.python.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz#md5=adabca1867c9cf39773037951710af02 (from https://pypi.python.org/simple/sequana/), version: 0.6.3 Found link https://pypi.python.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz#md5=5fa403edc2456070dea280c1c114f582 (from https://pypi.python.org/simple/sequana/), version: 0.6.1 Found link https://pypi.python.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz#md5=a3c70cdc783f16a270bb45cfaac0fc09 (from https://pypi.python.org/simple/sequana/), version: 0.2.1 Found link https://pypi.python.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz#md5=5b12712dc65ee0c4d725ce886a759078 (from https://pypi.python.org/simple/sequana/), version: 0.1.12 Found link https://pypi.python.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz#md5=33cca62b4fabcc5e30eff7ff7dbe70f4 (from https://pypi.python.org/simple/sequana/), version: 0.1.14 Found link https://pypi.python.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz#md5=7a6181f8199e9157bceae0178a69f69d (from https://pypi.python.org/simple/sequana/), version: 0.3.0 Found link https://pypi.python.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz#md5=e2fc3cd65803de4498fe524e93be460c (from https://pypi.python.org/simple/sequana/), version: 0.0.3 Found link https://pypi.python.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz#md5=14102ca73ef3bac83b96fc300ad58360 (from https://pypi.python.org/simple/sequana/), version: 0.5.1 Found link https://pypi.python.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz#md5=254bf32b2db24a802af04ea2eae32300 (from https://pypi.python.org/simple/sequana/), version: 0.1.8 Found link https://pypi.python.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz#md5=7af9d6a6d2165ba07b25b4cb2e58912c (from https://pypi.python.org/simple/sequana/), version: 0.5.2 Found link https://pypi.python.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz#md5=7fde38de7d5327965633432ab8354c80 (from https://pypi.python.org/simple/sequana/), version: 0.2.0 Found link https://pypi.python.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz#md5=4e1db9e944cbd113abaffd493f561a13 (from https://pypi.python.org/simple/sequana/), version: 0.1.4 Found link https://pypi.python.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz#md5=b72a9c7f2dbceedeb3118ebffd7b1e18 (from https://pypi.python.org/simple/sequana/), version: 0.1.18 Found link https://pypi.python.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz#md5=e19d1b27200976b899f91e0f85ef0d3f (from https://pypi.python.org/simple/sequana/), version: 0.1.21 Found link https://pypi.python.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz#md5=e13e0be87bf56d2df0d14a0772fdcb75 (from https://pypi.python.org/simple/sequana/), version: 0.1.2 Found link https://pypi.python.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz#md5=0ca611df0ac3d3b56769b8e17b247f09 (from https://pypi.python.org/simple/sequana/), version: 0.6.5.post1 Found link https://pypi.python.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz#md5=5150831ec6f712d610093e344cdb58f4 (from https://pypi.python.org/simple/sequana/), version: 0.1.5 Found link https://pypi.python.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz#md5=7e930a8ffbe68e57d95f010a51705acd (from https://pypi.python.org/simple/sequana/), version: 0.1.13 Found link https://pypi.python.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz#md5=f407252995f6259b7e7f14ba56a47351 (from https://pypi.python.org/simple/sequana/), version: 0.6.2 Found link https://pypi.python.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz#md5=76a30123745149ee53803fcaed67ec4c (from https://pypi.python.org/simple/sequana/), version: 0.5.0 Found link https://pypi.python.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz#md5=e57e47618212068cbebdc527e8210a9a (from https://pypi.python.org/simple/sequana/), version: 0.6.3.post1 Found link https://pypi.python.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz#md5=3d0e32f7dcf6ac65a7ef4c6210eaa86f (from https://pypi.python.org/simple/sequana/), version: 0.1.7 Found link https://pypi.python.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz#md5=cb44789cb44063a5c232fcbba536ff78 (from https://pypi.python.org/simple/sequana/), version: 0.1.19 Found link https://pypi.python.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz#md5=1a95d983451ac9e795c8410496aaa071 (from https://pypi.python.org/simple/sequana/), version: 0.4.1 Found link https://pypi.python.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz#md5=4474d28ddd3baedd93d29b5e2d34c582 (from https://pypi.python.org/simple/sequana/), version: 0.1.1 Using version 0.6.5.post1 (newest of versions: 0.6.5.post1) Downloading sequana-0.6.5.post1.tar.gz (12.6MB) Downloading from URL https://pypi.python.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz#md5=0ca611df0ac3d3b56769b8e17b247f09 (from https://pypi.python.org/simple/sequana/) Running setup.py (path:/tmp/pip-build-tdcrfdwl/sequana/setup.py) egg_info for package sequana Running command python setup.py egg_info running egg_info creating pip-egg-info/sequana.egg-info writing dependency_links to pip-egg-info/sequana.egg-info/dependency_links.txt writing top-level names to pip-egg-info/sequana.egg-info/top_level.txt writing entry points to pip-egg-info/sequana.egg-info/entry_points.txt writing pip-egg-info/sequana.egg-info/PKG-INFO writing requirements to pip-egg-info/sequana.egg-info/requires.txt writing manifest file 'pip-egg-info/sequana.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/sequana.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*pyc' found under directory '*' warning: no previously-included files matching '*' found under directory 'sequana/methylation' warning: no previously-included files matching '*' found under directory 'test' warning: no previously-included files found matching 'sequana/rm2.py' writing manifest file 'pip-egg-info/sequana.egg-info/SOURCES.txt' Source in /tmp/pip-build-tdcrfdwl/sequana has version 0.6.5.post1, which satisfies requirement sequana==0.6.5.post1 from https://pypi.python.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz#md5=0ca611df0ac3d3b56769b8e17b247f09 Building wheels for collected packages: sequana Running setup.py bdist_wheel for sequana: started Destination directory: /tmp/tmpd8n6m544pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-tdcrfdwl/sequana/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpd8n6m544pip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/sequana copying sequana/cnv.py -> build/lib/sequana copying sequana/fasta.py -> build/lib/sequana copying sequana/tools.py -> build/lib/sequana copying sequana/lazyimports.py -> build/lib/sequana copying sequana/misc.py -> build/lib/sequana copying sequana/iotools.py -> build/lib/sequana copying sequana/freebayes_vcf_filter.py -> build/lib/sequana copying sequana/snpeff.py -> build/lib/sequana copying sequana/bamtools.py -> build/lib/sequana copying sequana/datatools.py -> build/lib/sequana copying sequana/pacbio.py -> build/lib/sequana copying sequana/adapters.py -> build/lib/sequana copying sequana/assembly.py -> build/lib/sequana copying sequana/snaketools.py -> build/lib/sequana copying sequana/adapters2.py -> build/lib/sequana copying sequana/krona.py -> build/lib/sequana copying sequana/phred.py -> build/lib/sequana copying sequana/sequence.py -> build/lib/sequana copying sequana/kraken.py -> build/lib/sequana copying sequana/fastq.py -> build/lib/sequana copying sequana/canu_scanner.py -> build/lib/sequana copying sequana/cigar.py -> build/lib/sequana copying sequana/running_median.py -> build/lib/sequana copying sequana/busco.py -> build/lib/sequana copying sequana/stats.py -> build/lib/sequana copying sequana/jsontool.py -> build/lib/sequana copying sequana/simulation.py -> build/lib/sequana copying sequana/__init__.py -> build/lib/sequana copying sequana/kmer.py -> build/lib/sequana copying sequana/summary.py -> build/lib/sequana copying sequana/lazy.py -> build/lib/sequana copying sequana/bedtools.py -> build/lib/sequana copying sequana/coverage.py -> build/lib/sequana copying sequana/vcf_filter.py -> build/lib/sequana copying sequana/freebayes_bcf_filter.py -> build/lib/sequana copying sequana/kraken_builder.py -> build/lib/sequana copying sequana/vcftools.py -> build/lib/sequana copying sequana/expdesign.py -> build/lib/sequana copying sequana/databases.py -> build/lib/sequana copying sequana/errors.py -> build/lib/sequana copying sequana/isoseq.py -> build/lib/sequana creating build/lib/sequana/scripts copying sequana/scripts/tools.py -> build/lib/sequana/scripts copying sequana/scripts/browser.py -> build/lib/sequana/scripts copying sequana/scripts/mapping.py -> build/lib/sequana/scripts copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts copying sequana/scripts/fastq_count.py -> build/lib/sequana/scripts copying sequana/scripts/__init__.py -> build/lib/sequana/scripts copying sequana/scripts/summary.py -> build/lib/sequana/scripts copying sequana/scripts/coverage.py -> build/lib/sequana/scripts copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts copying sequana/scripts/main.py -> build/lib/sequana/scripts copying sequana/scripts/compressor.py -> build/lib/sequana/scripts copying sequana/scripts/fastq_head.py -> build/lib/sequana/scripts creating build/lib/sequana/pipelines copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines creating build/lib/sequana/resources copying sequana/resources/__init__.py -> build/lib/sequana/resources creating build/lib/sequana/gui copying sequana/gui/file_browser.py -> build/lib/sequana/gui copying sequana/gui/tools.py -> build/lib/sequana/gui copying sequana/gui/browser.py -> build/lib/sequana/gui copying sequana/gui/messages.py -> build/lib/sequana/gui copying sequana/gui/ipython.py -> build/lib/sequana/gui copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui copying sequana/gui/about.py -> build/lib/sequana/gui copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui copying sequana/gui/help.py -> build/lib/sequana/gui copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui copying sequana/gui/ui_help.py -> build/lib/sequana/gui copying sequana/gui/__init__.py -> build/lib/sequana/gui copying sequana/gui/preferences.py -> build/lib/sequana/gui copying sequana/gui/widgets.py -> build/lib/sequana/gui copying sequana/gui/snakemake.py -> build/lib/sequana/gui creating build/lib/sequana/sphinxext copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext creating build/lib/sequana/plots copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots copying sequana/plots/__init__.py -> build/lib/sequana/plots creating build/lib/sequana/multiqc copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc creating build/lib/sequana/utils copying sequana/utils/datatables_js.py -> build/lib/sequana/utils copying sequana/utils/__init__.py -> build/lib/sequana/utils copying sequana/utils/config.py -> build/lib/sequana/utils creating build/lib/sequana/modules_report copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report creating build/lib/sequana/rules copying sequana/rules/__init__.py -> build/lib/sequana/rules creating build/lib/sequana/resources/canvas copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas creating build/lib/sequana/resources/js copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js creating build/lib/sequana/resources/snpeff copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff creating build/lib/sequana/resources/testing copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing creating build/lib/sequana/resources/css copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css creating build/lib/sequana/resources/images copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images creating build/lib/sequana/resources/templates copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates creating build/lib/sequana/resources/busco copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco creating build/lib/sequana/resources/data copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data creating build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters creating build/lib/sequana/rules/Utils copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils creating build/lib/sequana/rules/deeptools copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools creating build/lib/sequana/rules/picard-tools copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools creating build/lib/sequana/rules/Pacbio copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio creating build/lib/sequana/rules/Taxonomy copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy creating build/lib/sequana/rules/Assembly copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly creating build/lib/sequana/rules/SnpEff copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff creating build/lib/sequana/rules/codecs copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs creating build/lib/sequana/rules/sambamba copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba creating build/lib/sequana/rules/Adapters copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters creating build/lib/sequana/rules/Variant_caller copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller creating build/lib/sequana/rules/Mapping copying sequana/rules/Mapping/__init__.py -> build/lib/sequana/rules/Mapping copying sequana/pipelines/config.yaml -> build/lib/sequana/pipelines creating build/lib/sequana/pipelines/pacbio_denovo copying sequana/pipelines/pacbio_denovo/dag.png -> build/lib/sequana/pipelines/pacbio_denovo copying sequana/pipelines/pacbio_denovo/config.yaml -> build/lib/sequana/pipelines/pacbio_denovo copying sequana/pipelines/pacbio_denovo/requirements.txt -> build/lib/sequana/pipelines/pacbio_denovo copying sequana/pipelines/pacbio_denovo/README.rst -> build/lib/sequana/pipelines/pacbio_denovo copying sequana/pipelines/pacbio_denovo/pacbio_denovo.rules -> build/lib/sequana/pipelines/pacbio_denovo creating build/lib/sequana/pipelines/variant_calling copying sequana/pipelines/variant_calling/config.yaml -> build/lib/sequana/pipelines/variant_calling copying sequana/pipelines/variant_calling/variant_calling.rules -> build/lib/sequana/pipelines/variant_calling copying sequana/pipelines/variant_calling/requirements.txt -> build/lib/sequana/pipelines/variant_calling copying sequana/pipelines/variant_calling/README.rst -> build/lib/sequana/pipelines/variant_calling copying sequana/pipelines/variant_calling/variant_calling_dag.png -> build/lib/sequana/pipelines/variant_calling creating build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/smallrnaseq.rules -> build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/dag.png -> build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/config.yaml -> build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/cluster_config.json -> build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/multiqc_config.yaml -> build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/requirements.txt -> build/lib/sequana/pipelines/smallrnaseq copying sequana/pipelines/smallrnaseq/README.rst -> build/lib/sequana/pipelines/smallrnaseq creating build/lib/sequana/pipelines/coverage copying sequana/pipelines/coverage/dag.png -> build/lib/sequana/pipelines/coverage copying sequana/pipelines/coverage/config.yaml -> build/lib/sequana/pipelines/coverage copying sequana/pipelines/coverage/schema.yaml -> build/lib/sequana/pipelines/coverage copying sequana/pipelines/coverage/README.rst -> build/lib/sequana/pipelines/coverage copying sequana/pipelines/coverage/coverage.rules -> build/lib/sequana/pipelines/coverage creating build/lib/sequana/pipelines/pacbio_qc copying sequana/pipelines/pacbio_qc/dag.png -> build/lib/sequana/pipelines/pacbio_qc copying sequana/pipelines/pacbio_qc/config.yaml -> build/lib/sequana/pipelines/pacbio_qc copying sequana/pipelines/pacbio_qc/pacbio_qc.rules -> build/lib/sequana/pipelines/pacbio_qc copying sequana/pipelines/pacbio_qc/README.rst -> build/lib/sequana/pipelines/pacbio_qc creating build/lib/sequana/pipelines/atac-seq copying sequana/pipelines/atac-seq/config.yaml -> build/lib/sequana/pipelines/atac-seq copying sequana/pipelines/atac-seq/atac-seq.rules -> build/lib/sequana/pipelines/atac-seq creating build/lib/sequana/pipelines/pacbio_isoseq copying sequana/pipelines/pacbio_isoseq/config.yaml -> build/lib/sequana/pipelines/pacbio_isoseq copying sequana/pipelines/pacbio_isoseq/pacbio_isoseq.rules -> build/lib/sequana/pipelines/pacbio_isoseq copying sequana/pipelines/pacbio_isoseq/cluster_config.json -> build/lib/sequana/pipelines/pacbio_isoseq copying sequana/pipelines/pacbio_isoseq/requirements.txt -> build/lib/sequana/pipelines/pacbio_isoseq creating build/lib/sequana/pipelines/denovo_assembly copying sequana/pipelines/denovo_assembly/denovo_dag.png -> build/lib/sequana/pipelines/denovo_assembly copying sequana/pipelines/denovo_assembly/config.yaml -> build/lib/sequana/pipelines/denovo_assembly copying sequana/pipelines/denovo_assembly/cluster_config.json -> build/lib/sequana/pipelines/denovo_assembly copying sequana/pipelines/denovo_assembly/denovo_assembly.rules -> build/lib/sequana/pipelines/denovo_assembly copying sequana/pipelines/denovo_assembly/requirements.txt -> build/lib/sequana/pipelines/denovo_assembly copying sequana/pipelines/denovo_assembly/README.rst -> build/lib/sequana/pipelines/denovo_assembly creating build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/rnaseq.rules -> build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/dag.png -> build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/config.yaml -> build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/cluster_config.json -> build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/multiqc_config.yaml -> build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/requirements.txt -> build/lib/sequana/pipelines/rnaseq copying sequana/pipelines/rnaseq/README.rst -> build/lib/sequana/pipelines/rnaseq creating build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor creating build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/dag.png -> build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/config.yaml -> build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/cluster_config.json -> build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/quality_control.rules -> build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/requirements.txt -> build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/schema.yaml -> build/lib/sequana/pipelines/quality_control copying sequana/pipelines/quality_control/README.rst -> build/lib/sequana/pipelines/quality_control copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc copying sequana/rules/README.rst -> build/lib/sequana/rules creating build/lib/sequana/rules/DupRadar copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar creating build/lib/sequana/rules/sequana_coverage copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage creating build/lib/sequana/rules/prokka copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka creating build/lib/sequana/rules/bwa_index copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index creating build/lib/sequana/rules/bam_quality_filter copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter creating build/lib/sequana/rules/RNAseQC copying sequana/rules/RNAseQC/RNAseQC.rules -> build/lib/sequana/rules/RNAseQC creating build/lib/sequana/rules/copy_multiple_files copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files creating build/lib/sequana/rules/SARTools copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools creating build/lib/sequana/rules/bwa_mem_dynamic copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic creating build/lib/sequana/rules/bwa_bam_to_fastq copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq creating build/lib/sequana/rules/quast copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast creating build/lib/sequana/rules/digital_normalisation copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation creating build/lib/sequana/rules/syntview copying sequana/rules/syntview/syntview.rules -> build/lib/sequana/rules/syntview creating build/lib/sequana/rules/feature_counts copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts creating build/lib/sequana/rules/format_contigs copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs creating build/lib/sequana/rules/bam_analysis copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis creating build/lib/sequana/rules/preSARTools copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools creating build/lib/sequana/rules/summary_pipeline copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline creating build/lib/sequana/rules/miRNA_count_dynamic copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic creating build/lib/sequana/rules/fastq_sampling copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling creating build/lib/sequana/rules/multiqc copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc creating build/lib/sequana/rules/indel_realigner copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner creating build/lib/sequana/rules/samtools_sort copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort creating build/lib/sequana/rules/igvtools copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools creating build/lib/sequana/rules/samtools_depth copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth creating build/lib/sequana/rules/fastq_stats_dynamic copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic creating build/lib/sequana/rules/fastqc_dynamic copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic creating build/lib/sequana/rules/mapping_analysis copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis creating build/lib/sequana/rules/Utils/dynamic_copy copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf creating build/lib/sequana/rules/Utils/dynamic_unpigz copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz creating build/lib/sequana/rules/deeptools/plotCorrelation copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation creating build/lib/sequana/rules/deeptools/multiBamSummary copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary creating build/lib/sequana/rules/deeptools/BamPEFragmentSize copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize creating build/lib/sequana/rules/deeptools/bamCoverage copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage creating build/lib/sequana/rules/deeptools/plotCoverage copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary creating build/lib/sequana/rules/picard-tools/mark_duplicates copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics creating build/lib/sequana/rules/picard-tools/reorderSam copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam creating build/lib/sequana/rules/picard-tools/add_read_group copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group creating build/lib/sequana/rules/Pacbio/pacbio_quality copying sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/Pacbio/pacbio_quality creating build/lib/sequana/rules/Taxonomy/fastq_screen copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen creating build/lib/sequana/rules/Taxonomy/fastq_screen_report copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report creating build/lib/sequana/rules/Taxonomy/kraken copying sequana/rules/Taxonomy/kraken/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken creating build/lib/sequana/rules/Assembly/busco_analysis copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis creating build/lib/sequana/rules/Assembly/spades copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades creating build/lib/sequana/rules/Assembly/spades_get_fastq copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq creating build/lib/sequana/rules/Assembly/busco copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco creating build/lib/sequana/rules/Assembly/canu copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu creating build/lib/sequana/rules/Dev creating build/lib/sequana/rules/Dev/kraken_adapters copying sequana/rules/Dev/kraken_adapters/kraken_adapters.rules -> build/lib/sequana/rules/Dev/kraken_adapters creating build/lib/sequana/rules/Misc creating build/lib/sequana/rules/Misc/extract_fasta_from_bed copying sequana/rules/Misc/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/Misc/extract_fasta_from_bed creating build/lib/sequana/rules/Misc/rulegraph copying sequana/rules/Misc/rulegraph/rulegraph.rules -> build/lib/sequana/rules/Misc/rulegraph creating build/lib/sequana/rules/Misc/dag copying sequana/rules/Misc/dag/dag.rules -> build/lib/sequana/rules/Misc/dag creating build/lib/sequana/rules/Misc/conda copying sequana/rules/Misc/conda/conda.rules -> build/lib/sequana/rules/Misc/conda creating build/lib/sequana/rules/peak_calling creating build/lib/sequana/rules/peak_calling/macs2 copying sequana/rules/peak_calling/macs2/macs2.rules -> build/lib/sequana/rules/peak_calling/macs2 creating build/lib/sequana/rules/SnpEff/snpeff copying sequana/rules/SnpEff/snpeff/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff creating build/lib/sequana/rules/SnpEff/snpeff_create_database copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database creating build/lib/sequana/rules/SnpEff/snpeff_dynamic copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta creating build/lib/sequana/rules/codecs/fastq_to_dsrc copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc creating build/lib/sequana/rules/codecs/fastq_to_gz copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz creating build/lib/sequana/rules/codecs/bam_to_fasta copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta creating build/lib/sequana/rules/codecs/dsrc_to_gz copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz creating build/lib/sequana/rules/codecs/bz2_to_dsrc copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc creating build/lib/sequana/rules/codecs/bz2_to_fastq copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq creating build/lib/sequana/rules/codecs/bz2_to_gz copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz creating build/lib/sequana/rules/codecs/gz_to_fastq copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq creating build/lib/sequana/rules/codecs/dsrc_to_bz2 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 creating build/lib/sequana/rules/codecs/dsrc_to_fastq copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq creating build/lib/sequana/rules/codecs/fastq_to_bz2 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 creating build/lib/sequana/rules/codecs/gz_to_dsrc copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc creating build/lib/sequana/rules/codecs/gz_to_bz2 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 creating build/lib/sequana/rules/sambamba/sambamba_markdup copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup creating build/lib/sequana/rules/sambamba/sambamba_filter copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter creating build/lib/sequana/rules/Adapters/cutadapt copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt creating build/lib/sequana/rules/Adapters/identify_adapters copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters creating build/lib/sequana/rules/Adapters/skewer copying sequana/rules/Adapters/skewer/skewer.rules -> build/lib/sequana/rules/Adapters/skewer creating build/lib/sequana/rules/Adapters/alien_trimmer copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer creating build/lib/sequana/rules/Adapters/adapter_removal copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal creating build/lib/sequana/rules/Adapters/clean_ngs copying sequana/rules/Adapters/clean_ngs/clean_ngs.rules -> build/lib/sequana/rules/Adapters/clean_ngs creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter creating build/lib/sequana/rules/Variant_caller/freebayes copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter creating build/lib/sequana/rules/Variant_caller/joint_freebayes copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes creating build/lib/sequana/rules/Mapping/bowtie1_mapping_dynamic copying sequana/rules/Mapping/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/Mapping/bowtie1_mapping_dynamic creating build/lib/sequana/rules/Mapping/bowtie2_index copying sequana/rules/Mapping/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/Mapping/bowtie2_index creating build/lib/sequana/rules/Mapping/bowtie1_index_dynamic copying sequana/rules/Mapping/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/Mapping/bowtie1_index_dynamic creating build/lib/sequana/rules/Mapping/bowtie2_mapping copying sequana/rules/Mapping/bowtie2_mapping/bowtie2_mapping.rules -> build/lib/sequana/rules/Mapping/bowtie2_mapping creating build/lib/sequana/rules/Mapping/star_index copying sequana/rules/Mapping/star_index/star_index.rules -> build/lib/sequana/rules/Mapping/star_index creating build/lib/sequana/rules/Mapping/star_mapping copying sequana/rules/Mapping/star_mapping/star_mapping.rules -> build/lib/sequana/rules/Mapping/star_mapping creating build/lib/sequana/rules/Mapping/tophat_mapping copying sequana/rules/Mapping/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/Mapping/tophat_mapping copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/filtered.vcf -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/remaining.vcf -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css copying sequana/resources/css/report.css -> build/lib/sequana/resources/css copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data copying sequana/resources/data/snpEff.config -> build/lib/sequana/resources/data copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Rubicon_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_PCRFree_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Rubicon_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_PCRFree_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_PCRFree_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Rubicon_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/fastq_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/fastq_head.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/pipelines creating build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_denovo copying build/lib/sequana/pipelines/pacbio_denovo/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_denovo copying build/lib/sequana/pipelines/pacbio_denovo/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_denovo copying build/lib/sequana/pipelines/pacbio_denovo/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_denovo copying build/lib/sequana/pipelines/pacbio_denovo/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_denovo copying build/lib/sequana/pipelines/pacbio_denovo/pacbio_denovo.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_denovo copying build/lib/sequana/pipelines/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines creating build/bdist.linux-armv7l/wheel/sequana/pipelines/variant_calling copying build/lib/sequana/pipelines/variant_calling/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/variant_calling copying build/lib/sequana/pipelines/variant_calling/variant_calling.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/variant_calling copying build/lib/sequana/pipelines/variant_calling/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/variant_calling copying build/lib/sequana/pipelines/variant_calling/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/variant_calling copying build/lib/sequana/pipelines/variant_calling/variant_calling_dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/variant_calling creating build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/smallrnaseq.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq copying build/lib/sequana/pipelines/smallrnaseq/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/smallrnaseq creating build/bdist.linux-armv7l/wheel/sequana/pipelines/coverage copying build/lib/sequana/pipelines/coverage/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/coverage copying build/lib/sequana/pipelines/coverage/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/coverage copying build/lib/sequana/pipelines/coverage/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/coverage copying build/lib/sequana/pipelines/coverage/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/coverage copying build/lib/sequana/pipelines/coverage/coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/coverage creating build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_qc copying build/lib/sequana/pipelines/pacbio_qc/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_qc copying build/lib/sequana/pipelines/pacbio_qc/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_qc copying build/lib/sequana/pipelines/pacbio_qc/pacbio_qc.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_qc copying build/lib/sequana/pipelines/pacbio_qc/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_qc creating build/bdist.linux-armv7l/wheel/sequana/pipelines/atac-seq copying build/lib/sequana/pipelines/atac-seq/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/atac-seq copying build/lib/sequana/pipelines/atac-seq/atac-seq.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/atac-seq creating build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_isoseq copying build/lib/sequana/pipelines/pacbio_isoseq/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_isoseq copying build/lib/sequana/pipelines/pacbio_isoseq/pacbio_isoseq.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_isoseq copying build/lib/sequana/pipelines/pacbio_isoseq/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_isoseq copying build/lib/sequana/pipelines/pacbio_isoseq/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/pacbio_isoseq creating build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/denovo_assembly/denovo_dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/denovo_assembly/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/denovo_assembly/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/denovo_assembly/denovo_assembly.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/denovo_assembly/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/denovo_assembly/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/denovo_assembly copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines creating build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/rnaseq.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq copying build/lib/sequana/pipelines/rnaseq/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/rnaseq creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor creating build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/quality_control.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/pipelines/quality_control/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/quality_control copying build/lib/sequana/adapters2.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/resources creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas creating build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff creating build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/filtered.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/remaining.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing creating build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources creating build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images creating build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates creating build/bdist.linux-armv7l/wheel/sequana/resources/busco copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco creating build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Rubicon_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_PCRFree_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Rubicon_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_PCRFree_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_PCRFree_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Rubicon_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/simulation.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils creating build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/rules creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter creating build/bdist.linux-armv7l/wheel/sequana/rules/RNAseQC copying build/lib/sequana/rules/RNAseQC/RNAseQC.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/RNAseQC creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/quast copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation creating build/bdist.linux-armv7l/wheel/sequana/rules/syntview copying build/lib/sequana/rules/syntview/syntview.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/syntview creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality copying build/lib/sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken copying build/lib/sequana/rules/Taxonomy/kraken/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules creating build/bdist.linux-armv7l/wheel/sequana/rules/Dev creating build/bdist.linux-armv7l/wheel/sequana/rules/Dev/kraken_adapters copying build/lib/sequana/rules/Dev/kraken_adapters/kraken_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Dev/kraken_adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/Misc creating build/bdist.linux-armv7l/wheel/sequana/rules/Misc/extract_fasta_from_bed copying build/lib/sequana/rules/Misc/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Misc/extract_fasta_from_bed creating build/bdist.linux-armv7l/wheel/sequana/rules/Misc/rulegraph copying build/lib/sequana/rules/Misc/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Misc/rulegraph creating build/bdist.linux-armv7l/wheel/sequana/rules/Misc/dag copying build/lib/sequana/rules/Misc/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Misc/dag creating build/bdist.linux-armv7l/wheel/sequana/rules/Misc/conda copying build/lib/sequana/rules/Misc/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Misc/conda creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2 copying build/lib/sequana/rules/peak_calling/macs2/macs2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff copying build/lib/sequana/rules/SnpEff/snpeff/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/skewer copying build/lib/sequana/rules/Adapters/skewer/skewer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/skewer creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/clean_ngs copying build/lib/sequana/rules/Adapters/clean_ngs/clean_ngs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/clean_ngs copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie1_mapping_dynamic copying build/lib/sequana/rules/Mapping/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie1_mapping_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie2_index copying build/lib/sequana/rules/Mapping/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie2_index creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie1_index_dynamic copying build/lib/sequana/rules/Mapping/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie1_index_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie2_mapping copying build/lib/sequana/rules/Mapping/bowtie2_mapping/bowtie2_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/bowtie2_mapping creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/star_index copying build/lib/sequana/rules/Mapping/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/star_index creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/star_mapping copying build/lib/sequana/rules/Mapping/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/star_mapping copying build/lib/sequana/rules/Mapping/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping creating build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/tophat_mapping copying build/lib/sequana/rules/Mapping/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Mapping/tophat_mapping creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana running install_egg_info running egg_info writing dependency_links to sequana.egg-info/dependency_links.txt writing sequana.egg-info/PKG-INFO writing requirements to sequana.egg-info/requires.txt writing top-level names to sequana.egg-info/top_level.txt writing entry points to sequana.egg-info/entry_points.txt reading manifest file 'sequana.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*pyc' found under directory '*' warning: no previously-included files matching '*' found under directory 'sequana/methylation' warning: no previously-included files matching '*' found under directory 'test' warning: no previously-included files found matching 'sequana/rm2.py' writing manifest file 'sequana.egg-info/SOURCES.txt' Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.6.5.post1-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/sequana-0.6.5.post1.dist-info/WHEEL Running setup.py bdist_wheel for sequana: finished with status 'done' Stored in directory: /tmp/tmpp8rg4l9w Successfully built sequana Cleaning up... Removing source in /tmp/pip-build-tdcrfdwl/sequana