Collecting gtdbtk==0.0.4b0 1 location(s) to search for versions of gtdbtk: * https://pypi.python.org/simple/gtdbtk/ Getting page https://pypi.python.org/simple/gtdbtk/ Analyzing links from page https://pypi.python.org/simple/gtdbtk/ Found link https://pypi.python.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz#md5=3b35624126fd2b714809bb2920be8691 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.1 Found link https://pypi.python.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz#md5=dd1b7b1f545f1f615abc5fc07a74e437 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.2 Found link https://pypi.python.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz#md5=f5fc331ec43b0e99fb17ec2260d8b50d (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.4b0 Found link https://pypi.python.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz#md5=c8b342ccf3928b82f03d4b9c2e579228 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.3 Using version 0.0.4b0 (newest of versions: 0.0.4b0) Downloading gtdbtk-0.0.4b0.tar.gz (69kB) Downloading from URL https://pypi.python.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz#md5=f5fc331ec43b0e99fb17ec2260d8b50d (from https://pypi.python.org/simple/gtdbtk/) Running setup.py (path:/tmp/pip-build-4qo6ke5l/gtdbtk/setup.py) egg_info for package gtdbtk Running command python setup.py egg_info running egg_info creating pip-egg-info/gtdbtk.egg-info writing dependency_links to pip-egg-info/gtdbtk.egg-info/dependency_links.txt writing pip-egg-info/gtdbtk.egg-info/PKG-INFO writing top-level names to pip-egg-info/gtdbtk.egg-info/top_level.txt writing requirements to pip-egg-info/gtdbtk.egg-info/requires.txt writing manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt' /usr/local/lib/python3.4/dist-packages/setuptools/dist.py:352: UserWarning: Normalizing '0.0.4-beta' to '0.0.4b0' normalized_version, package init file 'gtdbtk/external/Bio/Pfam/Active_site/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/HMM/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/Scan/__init__.py' not found (or not a regular file) reading manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'config.py' found anywhere in distribution writing manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt' Source in /tmp/pip-build-4qo6ke5l/gtdbtk has version 0.0.4b0, which satisfies requirement gtdbtk==0.0.4b0 from https://pypi.python.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz#md5=f5fc331ec43b0e99fb17ec2260d8b50d Building wheels for collected packages: gtdbtk Running setup.py bdist_wheel for gtdbtk: started Destination directory: /tmp/tmpkid72izgpip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-4qo6ke5l/gtdbtk/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpkid72izgpip-wheel- /usr/local/lib/python3.4/dist-packages/setuptools/dist.py:352: UserWarning: Normalizing '0.0.4-beta' to '0.0.4b0' normalized_version, running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/gtdbtk copying gtdbtk/tools.py -> build/lib/gtdbtk copying gtdbtk/classify.py -> build/lib/gtdbtk copying gtdbtk/markers.py -> build/lib/gtdbtk copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk copying gtdbtk/relative_distance.py -> build/lib/gtdbtk copying gtdbtk/__init__.py -> build/lib/gtdbtk copying gtdbtk/main.py -> build/lib/gtdbtk creating build/lib/gtdbtk/config copying gtdbtk/config/config_template.py -> build/lib/gtdbtk/config copying gtdbtk/config/default_values.py -> build/lib/gtdbtk/config copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config copying gtdbtk/config/config_metadata.py -> build/lib/gtdbtk/config creating build/lib/gtdbtk/external copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external package init file 'gtdbtk/external/Bio/Pfam/Active_site/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/HMM/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/Scan/__init__.py' not found (or not a regular file) copying gtdbtk/VERSION -> build/lib/gtdbtk copying gtdbtk/external/pfam_search.pl -> build/lib/gtdbtk/external creating build/lib/gtdbtk/external/Bio creating build/lib/gtdbtk/external/Bio/Pfam creating build/lib/gtdbtk/external/Bio/Pfam/Active_site copying gtdbtk/external/Bio/Pfam/Active_site/as_search.pm -> build/lib/gtdbtk/external/Bio/Pfam/Active_site creating build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMM.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMIO.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMMatch.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMResults.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMResultsIO.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMSequence.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMUnit.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM creating build/lib/gtdbtk/external/Bio/Pfam/Scan copying gtdbtk/external/Bio/Pfam/Scan/PfamScan.pm -> build/lib/gtdbtk/external/Bio/Pfam/Scan copying gtdbtk/external/Bio/Pfam/Scan/Seq.pm -> build/lib/gtdbtk/external/Bio/Pfam/Scan running build_scripts creating build/scripts-3.4 copying and adjusting bin/gtdbtk -> build/scripts-3.4 changing mode of build/scripts-3.4/gtdbtk from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk creating build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/pfam_search.pl -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMResultsIO.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMMatch.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMResults.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMM.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMIO.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMSequence.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMUnit.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Scan copying build/lib/gtdbtk/external/Bio/Pfam/Scan/Seq.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Scan copying build/lib/gtdbtk/external/Bio/Pfam/Scan/PfamScan.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Scan creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Active_site copying build/lib/gtdbtk/external/Bio/Pfam/Active_site/as_search.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Active_site copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/VERSION -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk creating build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/config_template.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/default_values.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/config_metadata.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk running install_egg_info running egg_info writing requirements to gtdbtk.egg-info/requires.txt writing gtdbtk.egg-info/PKG-INFO writing top-level names to gtdbtk.egg-info/top_level.txt writing dependency_links to gtdbtk.egg-info/dependency_links.txt reading manifest file 'gtdbtk.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'config.py' found anywhere in distribution writing manifest file 'gtdbtk.egg-info/SOURCES.txt' Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b0.data creating build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b0.data/scripts copying build/scripts-3.4/gtdbtk -> build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b0.data/scripts changing mode of build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b0.data/scripts/gtdbtk to 755 creating build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b0.dist-info/WHEEL Running setup.py bdist_wheel for gtdbtk: finished with status 'done' Stored in directory: /tmp/tmpfd6ta5ky Successfully built gtdbtk Cleaning up... Removing source in /tmp/pip-build-4qo6ke5l/gtdbtk