Collecting gtdbtk==0.0.4b3 1 location(s) to search for versions of gtdbtk: * https://pypi.python.org/simple/gtdbtk/ Getting page https://pypi.python.org/simple/gtdbtk/ Analyzing links from page https://pypi.python.org/simple/gtdbtk/ Found link https://pypi.python.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz#md5=3b35624126fd2b714809bb2920be8691 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.1 Found link https://pypi.python.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz#md5=dd1b7b1f545f1f615abc5fc07a74e437 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.2 Found link https://pypi.python.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz#md5=f5fc331ec43b0e99fb17ec2260d8b50d (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.4b0 Found link https://pypi.python.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz#md5=c8b342ccf3928b82f03d4b9c2e579228 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.3 Found link https://pypi.python.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz#md5=493bad5ad4df8add7ac0b60598eb4dcb (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.4b2 Found link https://pypi.python.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz#md5=729ce41d59f9eb7fd16d8c08a9930bf1 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.4b3 Found link https://pypi.python.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz#md5=a1097f72074ceaaf1530b5d8dc7fd874 (from https://pypi.python.org/simple/gtdbtk/), version: 0.0.4b1 Using version 0.0.4b3 (newest of versions: 0.0.4b3) Downloading gtdbtk-0.0.4b3.tar.gz (67kB) Downloading from URL https://pypi.python.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz#md5=729ce41d59f9eb7fd16d8c08a9930bf1 (from https://pypi.python.org/simple/gtdbtk/) Running setup.py (path:/tmp/pip-build-gq9fauqn/gtdbtk/setup.py) egg_info for package gtdbtk Running command python setup.py egg_info running egg_info creating pip-egg-info/gtdbtk.egg-info writing requirements to pip-egg-info/gtdbtk.egg-info/requires.txt writing pip-egg-info/gtdbtk.egg-info/PKG-INFO writing dependency_links to pip-egg-info/gtdbtk.egg-info/dependency_links.txt writing top-level names to pip-egg-info/gtdbtk.egg-info/top_level.txt writing manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt' package init file 'gtdbtk/external/Bio/Pfam/Active_site/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/HMM/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/Scan/__init__.py' not found (or not a regular file) reading manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'config.py' found anywhere in distribution writing manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt' Source in /tmp/pip-build-gq9fauqn/gtdbtk has version 0.0.4b3, which satisfies requirement gtdbtk==0.0.4b3 from https://pypi.python.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz#md5=729ce41d59f9eb7fd16d8c08a9930bf1 Building wheels for collected packages: gtdbtk Running setup.py bdist_wheel for gtdbtk: started Destination directory: /tmp/tmpb5rqs5q4pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-gq9fauqn/gtdbtk/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpb5rqs5q4pip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/gtdbtk copying gtdbtk/relative_distance.py -> build/lib/gtdbtk copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk copying gtdbtk/markers.py -> build/lib/gtdbtk copying gtdbtk/main.py -> build/lib/gtdbtk copying gtdbtk/classify.py -> build/lib/gtdbtk copying gtdbtk/tools.py -> build/lib/gtdbtk copying gtdbtk/__init__.py -> build/lib/gtdbtk creating build/lib/gtdbtk/config copying gtdbtk/config/default_values.py -> build/lib/gtdbtk/config copying gtdbtk/config/config_metadata.py -> build/lib/gtdbtk/config copying gtdbtk/config/config_template.py -> build/lib/gtdbtk/config copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config creating build/lib/gtdbtk/external copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external package init file 'gtdbtk/external/Bio/Pfam/Active_site/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/HMM/__init__.py' not found (or not a regular file) package init file 'gtdbtk/external/Bio/Pfam/Scan/__init__.py' not found (or not a regular file) copying gtdbtk/VERSION -> build/lib/gtdbtk copying gtdbtk/external/pfam_search.pl -> build/lib/gtdbtk/external creating build/lib/gtdbtk/external/Bio creating build/lib/gtdbtk/external/Bio/Pfam creating build/lib/gtdbtk/external/Bio/Pfam/Active_site copying gtdbtk/external/Bio/Pfam/Active_site/as_search.pm -> build/lib/gtdbtk/external/Bio/Pfam/Active_site creating build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMM.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMIO.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMMatch.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMResults.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMResultsIO.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMSequence.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM copying gtdbtk/external/Bio/Pfam/HMM/HMMUnit.pm -> build/lib/gtdbtk/external/Bio/Pfam/HMM creating build/lib/gtdbtk/external/Bio/Pfam/Scan copying gtdbtk/external/Bio/Pfam/Scan/PfamScan.pm -> build/lib/gtdbtk/external/Bio/Pfam/Scan copying gtdbtk/external/Bio/Pfam/Scan/Seq.pm -> build/lib/gtdbtk/external/Bio/Pfam/Scan running build_scripts creating build/scripts-3.5 copying and adjusting bin/gtdbtk -> build/scripts-3.5 changing mode of build/scripts-3.5/gtdbtk from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk creating build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/default_values.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/config_metadata.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/config_template.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk creating build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/pfam_search.pl -> build/bdist.linux-armv7l/wheel/gtdbtk/external creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Scan copying build/lib/gtdbtk/external/Bio/Pfam/Scan/Seq.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Scan copying build/lib/gtdbtk/external/Bio/Pfam/Scan/PfamScan.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Scan creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMM.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMResultsIO.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMMatch.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMSequence.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMIO.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMUnit.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM copying build/lib/gtdbtk/external/Bio/Pfam/HMM/HMMResults.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/HMM creating build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Active_site copying build/lib/gtdbtk/external/Bio/Pfam/Active_site/as_search.pm -> build/bdist.linux-armv7l/wheel/gtdbtk/external/Bio/Pfam/Active_site copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external copying build/lib/gtdbtk/VERSION -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk running install_egg_info running egg_info writing gtdbtk.egg-info/PKG-INFO writing top-level names to gtdbtk.egg-info/top_level.txt writing requirements to gtdbtk.egg-info/requires.txt writing dependency_links to gtdbtk.egg-info/dependency_links.txt reading manifest file 'gtdbtk.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'config.py' found anywhere in distribution writing manifest file 'gtdbtk.egg-info/SOURCES.txt' Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b3-py3.5.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b3.data creating build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b3.data/scripts copying build/scripts-3.5/gtdbtk -> build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b3.data/scripts changing mode of build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b3.data/scripts/gtdbtk to 755 creating build/bdist.linux-armv7l/wheel/gtdbtk-0.0.4b3.dist-info/WHEEL creating '/tmp/tmpb5rqs5q4pip-wheel-/gtdbtk-0.0.4b3-py3-none-any.whl' and adding '.' to it adding 'gtdbtk/VERSION' adding 'gtdbtk/__init__.py' adding 'gtdbtk/classify.py' adding 'gtdbtk/main.py' adding 'gtdbtk/markers.py' adding 'gtdbtk/relative_distance.py' adding 'gtdbtk/reroot_tree.py' adding 'gtdbtk/tools.py' adding 'gtdbtk/config/__init__.py' adding 'gtdbtk/config/config_metadata.py' adding 'gtdbtk/config/config_template.py' adding 'gtdbtk/config/default_values.py' adding 'gtdbtk/external/__init__.py' adding 'gtdbtk/external/hmm_aligner.py' adding 'gtdbtk/external/pfam_search.pl' adding 'gtdbtk/external/pfam_search.py' adding 'gtdbtk/external/prodigal.py' adding 'gtdbtk/external/tigrfam_search.py' adding 'gtdbtk/external/Bio/Pfam/Active_site/as_search.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMM.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMMIO.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMMMatch.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMMResults.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMMResultsIO.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMMSequence.pm' adding 'gtdbtk/external/Bio/Pfam/HMM/HMMUnit.pm' adding 'gtdbtk/external/Bio/Pfam/Scan/PfamScan.pm' adding 'gtdbtk/external/Bio/Pfam/Scan/Seq.pm' adding 'gtdbtk-0.0.4b3.data/scripts/gtdbtk' adding 'gtdbtk-0.0.4b3.dist-info/DESCRIPTION.rst' adding 'gtdbtk-0.0.4b3.dist-info/metadata.json' adding 'gtdbtk-0.0.4b3.dist-info/top_level.txt' adding 'gtdbtk-0.0.4b3.dist-info/WHEEL' adding 'gtdbtk-0.0.4b3.dist-info/METADATA' adding 'gtdbtk-0.0.4b3.dist-info/RECORD' Running setup.py bdist_wheel for gtdbtk: finished with status 'done' Stored in directory: /tmp/tmpm4jyn72l Successfully built gtdbtk Cleaning up... Removing source in /tmp/pip-build-gq9fauqn/gtdbtk