Collecting topiary==2.2.0 1 location(s) to search for versions of topiary: * https://pypi.python.org/simple/topiary/ Getting page https://pypi.python.org/simple/topiary/ Analyzing links from page https://pypi.org/simple/topiary/ Found link https://files.pythonhosted.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz#sha256=1a7511e45985fbccdf9c941042ea5e61d3b63d93fb61b8250812a17797892f9e (from https://pypi.org/simple/topiary/), version: 0.0.0 Found link https://files.pythonhosted.org/packages/40/7f/4c423389757bae0b47f7640d8b66bf9d5f5bbf6e387faa2dfa34fa0b809e/topiary-0.0.1.tar.gz#sha256=437abd3890694161a20bd024848f30da9ad877dd0a642d36ed0a6e386b438f9b (from https://pypi.org/simple/topiary/), version: 0.0.1 Found link https://files.pythonhosted.org/packages/29/a2/eb5e9dec8dafc167f24cd4234a8d75b815411ea8b6af4724e8218038d52e/topiary-0.0.2.tar.gz#sha256=42c5024809758a6a1f10ebe0530fe42dc1193afaac01015b6491c82e3ee8a6ed (from https://pypi.org/simple/topiary/), version: 0.0.2 Found link https://files.pythonhosted.org/packages/42/e4/e8450b31eac4229cfbe29bc87b8594ac1b03bc06f3272996cb3d50038c15/topiary-0.0.3.tar.gz#sha256=7f4bf328aa2a91a32e24b8cdef58b0ac4aa7a0d95e34440a16e5c542ce6329d4 (from https://pypi.org/simple/topiary/), version: 0.0.3 Found link https://files.pythonhosted.org/packages/bc/ea/f0de38c2ba7970d28fe8404cd7bd32b2d041e7d3dc2027d7efff390e213c/topiary-0.0.4.tar.gz#sha256=afaffe0505eb678184de3bcdbb35bfbc3de0ef68491e4bd8f03a258e6f5a321c (from https://pypi.org/simple/topiary/), version: 0.0.4 Found link https://files.pythonhosted.org/packages/92/85/fd3447ea12115e2274295bbdd728707a1e3870cf5e32dd63caa5ce17e0b2/topiary-0.0.5.tar.gz#sha256=7a159c30c4930982e0f20a4f3e1537f9a3d9a474d705f1d53001f540baa7c9b8 (from https://pypi.org/simple/topiary/), version: 0.0.5 Found link https://files.pythonhosted.org/packages/03/98/eaceb57e744d5324a242e9b18e2e137e6c6960dca63c5cbfdb462d60e79f/topiary-0.0.6.tar.gz#sha256=6c1d996647cf42651595455e3d550464d3871c8eefb186d58fa5f379c7b6ad75 (from https://pypi.org/simple/topiary/), version: 0.0.6 Found link https://files.pythonhosted.org/packages/6b/a2/9ac4d08a189dfa90e576d8bf8769249673d2dfd9cd2a9464674c56892501/topiary-0.0.7.tar.gz#sha256=a7d999a2b0752976a4cba792b44f416f4cc16bcd956f116956c1d5c1e73fb3d1 (from https://pypi.org/simple/topiary/), version: 0.0.7 Found link https://files.pythonhosted.org/packages/6a/a5/a8446cebca687d391bbb67d26873adbbfa878d9b057a613f7756568911bb/topiary-0.0.8.tar.gz#sha256=2c927ca92dc6316cb92e7b364287b1f40e018e07ab859d0cb201b16ae1118f23 (from https://pypi.org/simple/topiary/), version: 0.0.8 Found link https://files.pythonhosted.org/packages/19/7f/bf4d188a19634549a26b6b995a60146510435b5687a4c9afa5af01da4215/topiary-0.0.9.tar.gz#sha256=7e2dcfc313a8308fc56ac5b0b19af87282a36d8b326b5240550a806e779f5c0e (from https://pypi.org/simple/topiary/), version: 0.0.9 Found link https://files.pythonhosted.org/packages/bb/b2/e507265c740fa360bf05b47f9e957ad5f8803233dd7c892979ee6d772e9b/topiary-0.0.10.tar.gz#sha256=beb253ad7b554914eb88199162ea25cc475ea231487d4589403f3fef7f730bf8 (from https://pypi.org/simple/topiary/), version: 0.0.10 Found link https://files.pythonhosted.org/packages/d8/d8/d85f730eddd20a2df9d378a4d58a96d39e700c4fa109f1ead1a8f2509170/topiary-0.0.13.tar.gz#sha256=f83270e0de97f9ed1b7e01fb38a7e9d06d15f95d8b6779250d4f84c56b0dbe0d (from https://pypi.org/simple/topiary/), version: 0.0.13 Found link https://files.pythonhosted.org/packages/1a/e9/c5aad02530e1d64fc410dfc2e4eb32d4ace35d2367b6dbf9927b655e2af4/topiary-0.0.14.tar.gz#sha256=f84634877a4d9f3b564adda7cde2eb30b14d378a11d0daa25f8211759e48c162 (from https://pypi.org/simple/topiary/), version: 0.0.14 Found link https://files.pythonhosted.org/packages/b1/4f/8410302ba478be063f5ba41028ad88db4dde24f4a2096643b9c55109b176/topiary-0.0.15.tar.gz#sha256=59ed568dfceb7c19046a5f73fffb4e46f2bc8fe9ee78591798a455df1391d373 (from https://pypi.org/simple/topiary/), version: 0.0.15 Found link https://files.pythonhosted.org/packages/49/3a/ea68dc25b9c97e7fabecbbb5138c7be94eb3a9426f211db68f4c1ecd9ed4/topiary-0.0.16.tar.gz#sha256=b90ffb0a6b27a78f9e81e927fb7b2ab4d28a0eb28112989a00917c024d0faae9 (from https://pypi.org/simple/topiary/), version: 0.0.16 Found link https://files.pythonhosted.org/packages/6b/51/a9a4af9588db8d60bd38ca7851f85308bde8023ce09b12cb61687f68e2f6/topiary-0.0.17.tar.gz#sha256=01a547506f15c8337f1d19d11401fe0df47cd2e24043524dd156c155bac4a0fe (from https://pypi.org/simple/topiary/), version: 0.0.17 Found link https://files.pythonhosted.org/packages/ca/3c/01cb5d9e817ff2195d4579330d8b2d8b42e890d27109c8dd671253ea0a25/topiary-0.0.18.tar.gz#sha256=78407c675a1e193afd1cdbb153df9f9dad098bb75e47e467f3a63cbc01db67fc (from https://pypi.org/simple/topiary/), version: 0.0.18 Found link https://files.pythonhosted.org/packages/0e/4a/fbc62d6da7aeb1fa64fabd8d7f0836f5a079b0a098d9b2812b3158070672/topiary-0.0.19.tar.gz#sha256=1e63f63fc70ced9fc8e4af2dc36ce7a733733e64a79792ca4ce5f6f5e1a9c6c5 (from https://pypi.org/simple/topiary/), version: 0.0.19 Found link https://files.pythonhosted.org/packages/8a/f7/6b7e6863daa1cb5125420e68e85c4da83490b0700a0cd743ff0505f49df0/topiary-0.0.20.tar.gz#sha256=d84ee02968c10e8261ffa11a9739cb689cb01323f41339c8f2d7f5f48c35b5ea (from https://pypi.org/simple/topiary/), version: 0.0.20 Found link https://files.pythonhosted.org/packages/0c/18/4fce39e2b363296333b7833c4624ad0fdfc799aab2771af18d5b13006be0/topiary-0.0.21.tar.gz#sha256=29e35aa5687fd94c632d75df8885295f02746e271f70d7d387e45e1c93d20010 (from https://pypi.org/simple/topiary/), version: 0.0.21 Found link https://files.pythonhosted.org/packages/4f/8d/cfcda3d246e6a9dfd10fcda4de1b3cba171ffcf0508d3b8807f02765af1b/topiary-0.1.0.tar.gz#sha256=88d20b968ce60145f4a4e9aff7a951a557151a842c369bd2f6a0762f459c1cac (from https://pypi.org/simple/topiary/), version: 0.1.0 Found link https://files.pythonhosted.org/packages/f4/24/61c55b78e2597bbec4941edcf4161328f725f96836e20dd3b55e4d9d5fc3/topiary-0.1.1-0.tar.gz#sha256=10470f5686838a2981cc00e7191ec98bee759c656d39eea1da2c2f125744fb15 (from https://pypi.org/simple/topiary/), version: 0.1.1-0 Found link https://files.pythonhosted.org/packages/c4/6e/c3e2335ab2b5be7be8772ddd20bb158915ce5fdd0b11f8d55dea779638de/topiary-0.1.2.tar.gz#sha256=3a0fd178f2e3041ce65bc6c701d4d8dd38052128c0bfeeaf9e7f53a85ff1a473 (from https://pypi.org/simple/topiary/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/d3/fe/3b790a8e6401f8d7cfb50de1a4005e237f6c91ffa541c41524520c71e881/topiary-1.2.0.tar.gz#sha256=e7a84772565c293f5153f5ab1d3ffa5b97f114749bd923dfc45e14d3c037d1b9 (from https://pypi.org/simple/topiary/), version: 1.2.0 Found link https://files.pythonhosted.org/packages/66/cd/6713c0c5cb9b5902943586a918f000ad4521e5d24a4ff32ee99b1d211167/topiary-1.2.1.tar.gz#sha256=377a25109171c7bc80be3d0ffa12e8a5d46cd5198ee1e468813556a85934837d (from https://pypi.org/simple/topiary/), version: 1.2.1 Found link https://files.pythonhosted.org/packages/52/f0/5083f0d77ce33732322b146ed0088bee776750a07d1ef52b65a5c4f3fe21/topiary-2.0.0.tar.gz#sha256=21296eabe2f61d25c56f489ce7521845d365f9923ff38b9b033d197af0c1eba8 (from https://pypi.org/simple/topiary/), version: 2.0.0 Found link https://files.pythonhosted.org/packages/e2/13/7f3c8607ff3671a0d9f1f4eb58cb7f602ce540138329dee9a3bd581c84ea/topiary-2.1.0.tar.gz#sha256=47caded7dc04b729ec57f88108b0261950ea247eca8ae65f6b77219855b94080 (from https://pypi.org/simple/topiary/), version: 2.1.0 Found link https://files.pythonhosted.org/packages/3e/c7/ce747df518eafaab429e57814d08d6416c5d59fc06e8643b8a472ef0c1d2/topiary-2.2.0.tar.gz#sha256=a6d2a9bcb0031f1b8ad224fd2b9dc7969c4b6f413a5296a6c762e262d5c1d903 (from https://pypi.org/simple/topiary/), version: 2.2.0 Found link https://files.pythonhosted.org/packages/8a/d1/5ff5c84ea223c671f94c9f7df80481663f3bd0755bdbdd597e83fe52ca81/topiary-3.0.0.tar.gz#sha256=12a687bf22b80997ca64a9f5bc3da1a7373873fc2fc8f0fad46009c9681771c0 (from https://pypi.org/simple/topiary/), version: 3.0.0 Found link https://files.pythonhosted.org/packages/f0/e5/e560a7ec932717d57aa88285331314549bfb43565b014416db30f826ce61/topiary-3.0.2.tar.gz#sha256=e2bcaa876a5297a8e3bde89c9f3703b3d6188662fcc3da73152cd5f4190b5534 (from https://pypi.org/simple/topiary/), version: 3.0.2 Found link https://files.pythonhosted.org/packages/b2/0b/b44009ee261861f74d13b506f7d69a1c44f2df1990d046f7a852a5fe6540/topiary-3.0.6.tar.gz#sha256=01e5efe5278b1cfdc13170f4d998fcdd9563b74d783d8d9d2c74c57c4e6c536a (from https://pypi.org/simple/topiary/), version: 3.0.6 Using version 2.2.0 (newest of versions: 2.2.0) Downloading https://files.pythonhosted.org/packages/3e/c7/ce747df518eafaab429e57814d08d6416c5d59fc06e8643b8a472ef0c1d2/topiary-2.2.0.tar.gz Downloading from URL https://files.pythonhosted.org/packages/3e/c7/ce747df518eafaab429e57814d08d6416c5d59fc06e8643b8a472ef0c1d2/topiary-2.2.0.tar.gz#sha256=a6d2a9bcb0031f1b8ad224fd2b9dc7969c4b6f413a5296a6c762e262d5c1d903 (from https://pypi.org/simple/topiary/) Running setup.py (path:/tmp/pip-build-r2mu2fiv/topiary/setup.py) egg_info for package topiary Running command python setup.py egg_info Conversion of long_description from MD to reStructuredText failed... running egg_info creating pip-egg-info/topiary.egg-info writing pip-egg-info/topiary.egg-info/PKG-INFO writing dependency_links to pip-egg-info/topiary.egg-info/dependency_links.txt writing top-level names to pip-egg-info/topiary.egg-info/top_level.txt writing requirements to pip-egg-info/topiary.egg-info/requires.txt writing entry points to pip-egg-info/topiary.egg-info/entry_points.txt writing manifest file 'pip-egg-info/topiary.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/topiary.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/topiary.egg-info/SOURCES.txt' Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Source in /tmp/pip-build-r2mu2fiv/topiary has version 2.2.0, which satisfies requirement topiary==2.2.0 from https://files.pythonhosted.org/packages/3e/c7/ce747df518eafaab429e57814d08d6416c5d59fc06e8643b8a472ef0c1d2/topiary-2.2.0.tar.gz#sha256=a6d2a9bcb0031f1b8ad224fd2b9dc7969c4b6f413a5296a6c762e262d5c1d903 Building wheels for collected packages: topiary Running setup.py bdist_wheel for topiary: started Destination directory: /tmp/tmpq0zchhk6pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-r2mu2fiv/topiary/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpq0zchhk6pip-wheel- Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Conversion of long_description from MD to reStructuredText failed... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/test copying test/test_rna_helpers.py -> build/lib/test copying test/test_padding.py -> build/lib/test copying test/test_epitope_filters.py -> build/lib/test copying test/test_effect_expression_filters.py -> build/lib/test copying test/test_dataframe.py -> build/lib/test copying test/test_lazy_ligandome_dict.py -> build/lib/test copying test/test_contains_mutant_residues.py -> build/lib/test copying test/test_epitopes_from_commandline_args.py -> build/lib/test copying test/test_load_cufflinks_fpkm.py -> build/lib/test copying test/test_peptide_mutation_interval.py -> build/lib/test copying test/test_mutant_epitope_predictions_class2.py -> build/lib/test copying test/data.py -> build/lib/test copying test/__init__.py -> build/lib/test copying test/test_mutant_epitope_predictions_class1.py -> build/lib/test copying test/test_load_stringtie_gtf_fpkm.py -> build/lib/test copying test/test_variant_expression_filters.py -> build/lib/test copying test/test_args_outputs.py -> build/lib/test creating build/lib/topiary copying topiary/epitope_prediction.py -> build/lib/topiary copying topiary/sequence_helpers.py -> build/lib/topiary copying topiary/converters.py -> build/lib/topiary copying topiary/__init__.py -> build/lib/topiary copying topiary/filters.py -> build/lib/topiary copying topiary/predictor.py -> build/lib/topiary copying topiary/lazy_ligandome_dict.py -> build/lib/topiary creating build/lib/topiary/cli copying topiary/cli/sequence.py -> build/lib/topiary/cli copying topiary/cli/errors.py -> build/lib/topiary/cli copying topiary/cli/outputs.py -> build/lib/topiary/cli copying topiary/cli/rna.py -> build/lib/topiary/cli copying topiary/cli/filtering.py -> build/lib/topiary/cli copying topiary/cli/args.py -> build/lib/topiary/cli copying topiary/cli/__init__.py -> build/lib/topiary/cli copying topiary/cli/script.py -> build/lib/topiary/cli creating build/lib/topiary/rna copying topiary/rna/common.py -> build/lib/topiary/rna copying topiary/rna/cufflinks.py -> build/lib/topiary/rna copying topiary/rna/__init__.py -> build/lib/topiary/rna copying topiary/rna/gtf.py -> build/lib/topiary/rna installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_padding.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_epitope_filters.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_dataframe.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_lazy_ligandome_dict.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/data.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/__init__.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/test creating build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/epitope_prediction.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/converters.py -> build/bdist.linux-armv7l/wheel/topiary creating build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/topiary/cli copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/topiary/cli creating build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/topiary/rna copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/predictor.py -> build/bdist.linux-armv7l/wheel/topiary copying build/lib/topiary/lazy_ligandome_dict.py -> build/bdist.linux-armv7l/wheel/topiary running install_egg_info running egg_info writing requirements to topiary.egg-info/requires.txt writing dependency_links to topiary.egg-info/dependency_links.txt writing top-level names to topiary.egg-info/top_level.txt writing topiary.egg-info/PKG-INFO writing entry points to topiary.egg-info/entry_points.txt reading manifest file 'topiary.egg-info/SOURCES.txt' writing manifest file 'topiary.egg-info/SOURCES.txt' Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/topiary-2.2.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/topiary-2.2.0.dist-info/WHEEL Running setup.py bdist_wheel for topiary: finished with status 'done' Stored in directory: /tmp/tmp9dg6w40f Successfully built topiary Cleaning up... Removing source in /tmp/pip-build-r2mu2fiv/topiary