Collecting biocode==0.7.0 1 location(s) to search for versions of biocode: * https://pypi.python.org/simple/biocode/ Getting page https://pypi.python.org/simple/biocode/ Analyzing links from page https://pypi.org/simple/biocode/ Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0 Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1 Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3 Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4 Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5 Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0 Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0 Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1 Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0 Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1 Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2 Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4 Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5 Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7 Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0 Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1 Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2 Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3 Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0 Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0 Using version 0.7.0 (newest of versions: 0.7.0) Downloading https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz (9.4MB) Downloading from URL https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/) Running setup.py (path:/tmp/pip-build-emhbngsw/biocode/setup.py) egg_info for package biocode Running command python setup.py egg_info running egg_info creating pip-egg-info/biocode.egg-info writing pip-egg-info/biocode.egg-info/PKG-INFO writing top-level names to pip-egg-info/biocode.egg-info/top_level.txt writing dependency_links to pip-egg-info/biocode.egg-info/dependency_links.txt writing requirements to pip-egg-info/biocode.egg-info/requires.txt writing manifest file 'pip-egg-info/biocode.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/biocode.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/biocode.egg-info/SOURCES.txt' Source in /tmp/pip-build-emhbngsw/biocode has version 0.7.0, which satisfies requirement biocode==0.7.0 from https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 Building wheels for collected packages: biocode Running setup.py bdist_wheel for biocode: started Destination directory: /tmp/tmpty8ftb8_pip-wheel- Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-emhbngsw/biocode/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpty8ftb8_pip-wheel- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/biocode copying biocode/gff.py -> build/lib/biocode copying biocode/utils.py -> build/lib/biocode copying biocode/genbank.py -> build/lib/biocode copying biocode/annotation.py -> build/lib/biocode copying biocode/bed.py -> build/lib/biocode copying biocode/tbl.py -> build/lib/biocode copying biocode/things.py -> build/lib/biocode copying biocode/__init__.py -> build/lib/biocode running egg_info writing top-level names to biocode.egg-info/top_level.txt writing requirements to biocode.egg-info/requires.txt writing biocode.egg-info/PKG-INFO writing dependency_links to biocode.egg-info/dependency_links.txt reading manifest file 'biocode.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'biocode.egg-info/SOURCES.txt' creating build/lib/biocode/data copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data copying biocode/data/__init__.py -> build/lib/biocode/data copying biocode/data/biocode_script_index.json -> build/lib/biocode/data copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data copying biocode/data/go.json -> build/lib/biocode/data copying biocode/data/go.obo -> build/lib/biocode/data copying biocode/data/go.obo.biological_process.graph -> build/lib/biocode/data copying biocode/data/go.obo.cellular_component.graph -> build/lib/biocode/data copying biocode/data/go.obo.molecular_function.graph -> build/lib/biocode/data copying biocode/data/go.obo.terms -> build/lib/biocode/data copying biocode/data/go.pickle -> build/lib/biocode/data copying biocode/data/rsem_html_table.template -> build/lib/biocode/data running build_scripts creating build/scripts-3.4 copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/convert_htab_to_bed.py -> build/scripts-3.4 copying and adjusting bin/fasta_base_content.py -> build/scripts-3.4 copying and adjusting bin/subsample_fasta.py -> build/scripts-3.4 copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/merge_predicted_gff3.py -> build/scripts-3.4 copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.4 copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.4 copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.4 copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.4 copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.4 copying and adjusting bin/list_biocode.py -> build/scripts-3.4 copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.4 copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.4 copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.4 copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.4 copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.4 copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.4 copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/validate_fasta.py -> build/scripts-3.4 copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.4 copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.4 copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.4 copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/filter_uniref_by_repid.py -> build/scripts-3.4 copying and adjusting bin/calculate_query_coverage_by_blast.py -> build/scripts-3.4 copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.4 copying and adjusting bin/filter_gff3_by_id_list.py -> build/scripts-3.4 copying and adjusting bin/split_fasta_into_even_files.py -> build/scripts-3.4 copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.4 copying and adjusting bin/merge_bam_files.py -> build/scripts-3.4 copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.4 copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.4 copying and adjusting bin/check_gff_for_internal_stops.py -> build/scripts-3.4 copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.4 copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.4 copying and adjusting bin/report_or_replace_nonstandard_residues.py -> build/scripts-3.4 copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.4 copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.4 copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.4 copying and adjusting bin/make_go_index.py -> build/scripts-3.4 copying and adjusting bin/randomly_subsample_fastq.py -> build/scripts-3.4 copying and adjusting bin/fasta_size_distribution_plot.py -> build/scripts-3.4 copying and adjusting bin/remove_duplicate_sequences.py -> build/scripts-3.4 copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.4 copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.4 copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.4 copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.4 copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.4 copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.4 copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.4 copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.4 copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.4 copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.4 copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.4 copying and adjusting bin/convert_genbank_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/convert_blast_btab_to_bed.py -> build/scripts-3.4 copying and adjusting bin/compare_gene_structures.py -> build/scripts-3.4 copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.4 copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.4 copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.4 copying and adjusting bin/convert_gff3_to_bed.py -> build/scripts-3.4 copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/interleave_fasta.py -> build/scripts-3.4 copying and adjusting bin/make_go_slim.py -> build/scripts-3.4 copying and adjusting bin/report_basic_gff_model_agreement.py -> build/scripts-3.4 copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.4 copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.4 copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.4 copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.4 copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.4 copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.4 copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.4 copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.4 copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.4 copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.4 copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.4 copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.4 copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.4 copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.4 copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.4 copying and adjusting bin/set_source_column.py -> build/scripts-3.4 copying and adjusting bin/download_assemblies_from_genbank.py -> build/scripts-3.4 copying and adjusting bin/interleave_fastq.py -> build/scripts-3.4 copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.4 copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.4 changing mode of build/scripts-3.4/convert_blast_btab_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/convert_htab_to_bed.py from 644 to 755 changing mode of build/scripts-3.4/fasta_base_content.py from 644 to 755 changing mode of build/scripts-3.4/subsample_fasta.py from 644 to 755 changing mode of build/scripts-3.4/convert_glimmerHMM_gff_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/merge_predicted_gff3.py from 644 to 755 changing mode of build/scripts-3.4/add_gff3_locus_tags.py from 644 to 755 changing mode of build/scripts-3.4/convert_gff3_to_gene_association_format.py from 644 to 755 changing mode of build/scripts-3.4/detect_inverted_repeats.py from 644 to 755 changing mode of build/scripts-3.4/correct_gff3_CDS_phase_column.py from 644 to 755 changing mode of build/scripts-3.4/remove_duplicate_features.py from 644 to 755 changing mode of build/scripts-3.4/list_biocode.py from 644 to 755 changing mode of build/scripts-3.4/merge_masked_fasta_files.py from 644 to 755 changing mode of build/scripts-3.4/create_taxonomic_profile_from_blast.py from 644 to 755 changing mode of build/scripts-3.4/check_for_embedded_fasta_headers.py from 644 to 755 changing mode of build/scripts-3.4/split_isoforms_into_individual_genes.py from 644 to 755 changing mode of build/scripts-3.4/filter_fastq_by_N_content.py from 644 to 755 changing mode of build/scripts-3.4/select_training_and_evaluation_transcripts.py from 644 to 755 changing mode of build/scripts-3.4/convert_cegma_gff_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/validate_fasta.py from 644 to 755 changing mode of build/scripts-3.4/validate_feature_boundaries_on_molecules.py from 644 to 755 changing mode of build/scripts-3.4/report_coverage_gaps.py from 644 to 755 changing mode of build/scripts-3.4/mark_partial_genes.py from 644 to 755 changing mode of build/scripts-3.4/convert_aat_btab_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/filter_uniref_by_repid.py from 644 to 755 changing mode of build/scripts-3.4/calculate_query_coverage_by_blast.py from 644 to 755 changing mode of build/scripts-3.4/convert_gff3_to_ncbi_tbl.py from 644 to 755 changing mode of build/scripts-3.4/filter_gff3_by_id_list.py from 644 to 755 changing mode of build/scripts-3.4/split_fasta_into_even_files.py from 644 to 755 changing mode of build/scripts-3.4/replace_gff_type_column_value.py from 644 to 755 changing mode of build/scripts-3.4/merge_bam_files.py from 644 to 755 changing mode of build/scripts-3.4/prepend_to_fasta_header.py from 644 to 755 changing mode of build/scripts-3.4/add_polypeptide_to_gff3_gene_models.py from 644 to 755 changing mode of build/scripts-3.4/check_gff_for_internal_stops.py from 644 to 755 changing mode of build/scripts-3.4/remove_orphaned_features.py from 644 to 755 changing mode of build/scripts-3.4/convert_gff3_to_gbk.py from 644 to 755 changing mode of build/scripts-3.4/report_or_replace_nonstandard_residues.py from 644 to 755 changing mode of build/scripts-3.4/make_go_slim_index.py from 644 to 755 changing mode of build/scripts-3.4/extend_genes_to_stops.py from 644 to 755 changing mode of build/scripts-3.4/remove_masked_gene_models.py from 644 to 755 changing mode of build/scripts-3.4/make_go_index.py from 644 to 755 changing mode of build/scripts-3.4/randomly_subsample_fastq.py from 644 to 755 changing mode of build/scripts-3.4/fasta_size_distribution_plot.py from 644 to 755 changing mode of build/scripts-3.4/remove_duplicate_sequences.py from 644 to 755 changing mode of build/scripts-3.4/convert_metagenemark_gff_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/filter_fasta_by_header_regex.py from 644 to 755 changing mode of build/scripts-3.4/split_molecules_on_gaps.py from 644 to 755 changing mode of build/scripts-3.4/convert_fasta_contigs_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/report_gff_intron_and_intergenic_stats.py from 644 to 755 changing mode of build/scripts-3.4/append_to_column_9_value.py from 644 to 755 changing mode of build/scripts-3.4/split_interleaved_sequence_file.py from 644 to 755 changing mode of build/scripts-3.4/filter_fasta_by_type.py from 644 to 755 changing mode of build/scripts-3.4/convert_augustus_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/uniprot_sprot_to_sqlite3.py from 644 to 755 changing mode of build/scripts-3.4/hmmlib_to_sqlite3.py from 644 to 755 changing mode of build/scripts-3.4/update_selected_column9_values.py from 644 to 755 changing mode of build/scripts-3.4/get_mpilup_from_id_list.py from 644 to 755 changing mode of build/scripts-3.4/convert_prodigal_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/append_to_fastq_read_header.py from 644 to 755 changing mode of build/scripts-3.4/convert_genbank_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/convert_blast_btab_to_bed.py from 644 to 755 changing mode of build/scripts-3.4/compare_gene_structures.py from 644 to 755 changing mode of build/scripts-3.4/uniref_to_sqlite3.py from 644 to 755 changing mode of build/scripts-3.4/extract_fasta_regions.py from 644 to 755 changing mode of build/scripts-3.4/reverse_misordered_cds_coords.py from 644 to 755 changing mode of build/scripts-3.4/convert_gff3_to_bed.py from 644 to 755 changing mode of build/scripts-3.4/convert_scipio_gff_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/interleave_fasta.py from 644 to 755 changing mode of build/scripts-3.4/make_go_slim.py from 644 to 755 changing mode of build/scripts-3.4/report_basic_gff_model_agreement.py from 644 to 755 changing mode of build/scripts-3.4/make_cufflinks_ids_unique.py from 644 to 755 changing mode of build/scripts-3.4/fastq_simple_stats.py from 644 to 755 changing mode of build/scripts-3.4/eggnog_to_sqlite3.py from 644 to 755 changing mode of build/scripts-3.4/create_taxonomy_db.py from 644 to 755 changing mode of build/scripts-3.4/append_to_fasta_header.py from 644 to 755 changing mode of build/scripts-3.4/tigrfam_info_to_sqlite3.py from 644 to 755 changing mode of build/scripts-3.4/filter_uniref_by_taxonomy.py from 644 to 755 changing mode of build/scripts-3.4/reformat_fasta_residue_lengths.py from 644 to 755 changing mode of build/scripts-3.4/replace_homopolymeric_repeats_with_Ns.py from 644 to 755 changing mode of build/scripts-3.4/create_rsem_html_table.py from 644 to 755 changing mode of build/scripts-3.4/convert_cufflinks_gtf_to_gff3.py from 644 to 755 changing mode of build/scripts-3.4/reorient_sequences_by_id.py from 644 to 755 changing mode of build/scripts-3.4/convert_fastq_to_fasta.py from 644 to 755 changing mode of build/scripts-3.4/write_fasta_from_gff.py from 644 to 755 changing mode of build/scripts-3.4/convert_pasa_gff_to_models.py from 644 to 755 changing mode of build/scripts-3.4/set_source_column.py from 644 to 755 changing mode of build/scripts-3.4/download_assemblies_from_genbank.py from 644 to 755 changing mode of build/scripts-3.4/interleave_fastq.py from 644 to 755 changing mode of build/scripts-3.4/report_gff3_statistics.py from 644 to 755 changing mode of build/scripts-3.4/merge_fasta_files_and_uniquify_ids.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/bed.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode creating build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.obo.molecular_function.graph -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.obo.cellular_component.graph -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.obo -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.json -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/biocode_script_index.json -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.obo.biological_process.graph -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.pickle -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/go.obo.terms -> build/bdist.linux-armv7l/wheel/biocode/data copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data running install_egg_info Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.7.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/biocode-0.7.0.data creating build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_blast_btab_to_bed.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_htab_to_bed.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_gff3_to_bed.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/list_biocode.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/merge_predicted_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/make_go_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/download_assemblies_from_genbank.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts copying build/scripts-3.4/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/mark_partial_genes.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/append_to_fastq_read_header.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/reverse_misordered_cds_coords.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/report_basic_gff_model_agreement.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/append_to_column_9_value.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/extend_genes_to_stops.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/fasta_size_distribution_plot.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/select_training_and_evaluation_transcripts.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/make_go_slim_index.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/validate_feature_boundaries_on_molecules.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/write_fasta_from_gff.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/detect_inverted_repeats.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_prodigal_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/replace_gff_type_column_value.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/split_fasta_into_even_files.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/create_taxonomic_profile_from_blast.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/subsample_fasta.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/correct_gff3_CDS_phase_column.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_gff3_to_gbk.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/merge_bam_files.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_blast_btab_to_bed.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/prepend_to_fasta_header.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/report_gff_intron_and_intergenic_stats.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/interleave_fastq.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/compare_gene_structures.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/check_gff_for_internal_stops.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_genbank_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/reformat_fasta_residue_lengths.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/reorient_sequences_by_id.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/filter_uniref_by_taxonomy.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_scipio_gff_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/tigrfam_info_to_sqlite3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/update_selected_column9_values.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/filter_fastq_by_N_content.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/extract_fasta_regions.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_cegma_gff_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/report_coverage_gaps.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/create_taxonomy_db.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/validate_fasta.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/calculate_query_coverage_by_blast.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_htab_to_bed.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_fastq_to_fasta.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/filter_uniref_by_repid.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_gff3_to_bed.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/make_go_slim.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/split_interleaved_sequence_file.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/fastq_simple_stats.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/list_biocode.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_blast_btab_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_cufflinks_gtf_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_pasa_gff_to_models.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/get_mpilup_from_id_list.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/filter_fasta_by_type.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/fasta_base_content.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_aat_btab_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/replace_homopolymeric_repeats_with_Ns.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/randomly_subsample_fastq.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_fasta_contigs_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_gff3_to_ncbi_tbl.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/merge_predicted_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/create_rsem_html_table.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/uniref_to_sqlite3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/set_source_column.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/report_or_replace_nonstandard_residues.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/add_gff3_locus_tags.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/remove_masked_gene_models.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/filter_gff3_by_id_list.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/remove_orphaned_features.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/make_cufflinks_ids_unique.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/make_go_index.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/append_to_fasta_header.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/merge_masked_fasta_files.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/filter_fasta_by_header_regex.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/eggnog_to_sqlite3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/hmmlib_to_sqlite3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/interleave_fasta.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/check_for_embedded_fasta_headers.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_augustus_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_metagenemark_gff_to_gff3.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/remove_duplicate_sequences.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/split_isoforms_into_individual_genes.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/report_gff3_statistics.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/remove_duplicate_features.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/download_assemblies_from_genbank.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/convert_gff3_to_gene_association_format.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/split_molecules_on_gaps.py to 755 changing mode of build/bdist.linux-armv7l/wheel/biocode-0.7.0.data/scripts/uniprot_sprot_to_sqlite3.py to 755 creating build/bdist.linux-armv7l/wheel/biocode-0.7.0.dist-info/WHEEL Running setup.py bdist_wheel for biocode: finished with status 'done' Stored in directory: /tmp/tmpyl4q60oh Successfully built biocode Cleaning up... Removing source in /tmp/pip-build-emhbngsw/biocode