Created temporary directory: /tmp/pip-ephem-wheel-cache-lq3jjp2c
Created temporary directory: /tmp/pip-wheel-f5zcikf_
Looking in indexes: https://pypi.python.org/simple
Collecting cwl-airflow==1.0.8
  1 location(s) to search for versions of cwl-airflow:
  * https://pypi.python.org/simple/cwl-airflow/
  Getting page https://pypi.python.org/simple/cwl-airflow/
  Analyzing links from page https://pypi.org/simple/cwl-airflow/
    Found link https://files.pythonhosted.org/packages/24/3a/fd996cac3c572dee5df66046666754c82bf1e42df9b2bfea7eb7d7972042/cwl-airflow-1.0.4.tar.gz#sha256=5c37a58dbbc0ac9a0240d0a7ed84209c28b0aad0704f80700e38880230ae8cfa (from https://pypi.org/simple/cwl-airflow/), version: 1.0.4
    Found link https://files.pythonhosted.org/packages/44/10/0036788a97fe1d3c4adcca45d7c3bfac2cf20dac8d93fc95ce0daf3610e7/cwl-airflow-1.0.5.tar.gz#sha256=93f8c20f67dc179f83ba4b87fee04dad050540ec484b20d49a1ac34d33e58fbd (from https://pypi.org/simple/cwl-airflow/), version: 1.0.5
    Found link https://files.pythonhosted.org/packages/32/1a/78c47868795593c3c19ecd71a95871972cd517a9f0088f5363679816b1eb/cwl-airflow-1.0.6.tar.gz#sha256=f87c3d2d54f7e5224053b92a690bb29a07a64781579b6052ad6ae38ef47ce54e (from https://pypi.org/simple/cwl-airflow/), version: 1.0.6
    Found link https://files.pythonhosted.org/packages/b8/1f/12733cb716cd3c90bbd9df8fb44e023ed4f3e3a178dbd7e0df65dc6922ea/cwl-airflow-1.0.7.tar.gz#sha256=451dd94b672fefb0c0e63ff6d871e05a7ce9c9b56f068a55204cdbac9f48f899 (from https://pypi.org/simple/cwl-airflow/), version: 1.0.7
    Found link https://files.pythonhosted.org/packages/7e/0c/1781e6590de48e97698b06f58631173d2e78a4cc27fd98145ba555ed837c/cwl-airflow-1.0.8.tar.gz#sha256=09b6e22d69fceb72533c7758644ca2e7ddcf5b8b872b94033fcb2c8ed59a3878 (from https://pypi.org/simple/cwl-airflow/), version: 1.0.8
  Using version 1.0.8 (newest of versions: 1.0.8)
  Created temporary directory: /tmp/pip-unpack-3f3c80nb
  Downloading https://files.pythonhosted.org/packages/7e/0c/1781e6590de48e97698b06f58631173d2e78a4cc27fd98145ba555ed837c/cwl-airflow-1.0.8.tar.gz (6.2MB)
  Downloading from URL https://files.pythonhosted.org/packages/7e/0c/1781e6590de48e97698b06f58631173d2e78a4cc27fd98145ba555ed837c/cwl-airflow-1.0.8.tar.gz#sha256=09b6e22d69fceb72533c7758644ca2e7ddcf5b8b872b94033fcb2c8ed59a3878 (from https://pypi.org/simple/cwl-airflow/)
  Running setup.py (path:/tmp/pip-wheel-f5zcikf_/cwl-airflow/setup.py) egg_info for package cwl-airflow
    Running command python setup.py egg_info
    fatal: Not a git repository (or any of the parent directories): .git
    fatal: Not a git repository (or any of the parent directories): .git
    running egg_info
    creating pip-egg-info/cwl_airflow.egg-info
    writing pip-egg-info/cwl_airflow.egg-info/PKG-INFO
    writing top-level names to pip-egg-info/cwl_airflow.egg-info/top_level.txt
    writing dependency_links to pip-egg-info/cwl_airflow.egg-info/dependency_links.txt
    writing requirements to pip-egg-info/cwl_airflow.egg-info/requires.txt
    writing entry points to pip-egg-info/cwl_airflow.egg-info/entry_points.txt
    writing manifest file 'pip-egg-info/cwl_airflow.egg-info/SOURCES.txt'
    reading manifest file 'pip-egg-info/cwl_airflow.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    writing manifest file 'pip-egg-info/cwl_airflow.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-f5zcikf_/cwl-airflow has version 1.0.8, which satisfies requirement cwl-airflow==1.0.8 from https://files.pythonhosted.org/packages/7e/0c/1781e6590de48e97698b06f58631173d2e78a4cc27fd98145ba555ed837c/cwl-airflow-1.0.8.tar.gz#sha256=09b6e22d69fceb72533c7758644ca2e7ddcf5b8b872b94033fcb2c8ed59a3878
Building wheels for collected packages: cwl-airflow
  Created temporary directory: /tmp/pip-wheel-z501ttdb
  Running setup.py bdist_wheel for cwl-airflow: started
  Destination directory: /tmp/pip-wheel-z501ttdb
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-f5zcikf_/cwl-airflow/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-z501ttdb
  fatal: Not a git repository (or any of the parent directories): .git
  fatal: Not a git repository (or any of the parent directories): .git
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/cwl_airflow
  copying cwl_airflow/create_dag.py -> build/lib/cwl_airflow
  copying cwl_airflow/__init__.py -> build/lib/cwl_airflow
  copying cwl_airflow/main.py -> build/lib/cwl_airflow
  creating build/lib/cwl_airflow/dag_components
  copying cwl_airflow/dag_components/jobcleanup.py -> build/lib/cwl_airflow/dag_components
  copying cwl_airflow/dag_components/cwldag.py -> build/lib/cwl_airflow/dag_components
  copying cwl_airflow/dag_components/__init__.py -> build/lib/cwl_airflow/dag_components
  copying cwl_airflow/dag_components/cwlstepoperator.py -> build/lib/cwl_airflow/dag_components
  copying cwl_airflow/dag_components/jobdispatcher.py -> build/lib/cwl_airflow/dag_components
  creating build/lib/cwl_airflow/utils
  copying cwl_airflow/utils/mute.py -> build/lib/cwl_airflow/utils
  copying cwl_airflow/utils/logger.py -> build/lib/cwl_airflow/utils
  copying cwl_airflow/utils/func.py -> build/lib/cwl_airflow/utils
  copying cwl_airflow/utils/__init__.py -> build/lib/cwl_airflow/utils
  copying cwl_airflow/utils/utils.py -> build/lib/cwl_airflow/utils
  running egg_info
  writing top-level names to cwl_airflow.egg-info/top_level.txt
  writing dependency_links to cwl_airflow.egg-info/dependency_links.txt
  writing entry points to cwl_airflow.egg-info/entry_points.txt
  writing requirements to cwl_airflow.egg-info/requires.txt
  writing cwl_airflow.egg-info/PKG-INFO
  reading manifest file 'cwl_airflow.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  writing manifest file 'cwl_airflow.egg-info/SOURCES.txt'
  copying cwl_airflow/git_version -> build/lib/cwl_airflow
  creating build/lib/cwl_airflow/tests
  creating build/lib/cwl_airflow/tests/cwl
  creating build/lib/cwl_airflow/tests/cwl/subworkflows
  copying cwl_airflow/tests/cwl/subworkflows/bam-bedgraph-bigwig.cwl -> build/lib/cwl_airflow/tests/cwl/subworkflows
  creating build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/atdp.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/bedtools-genomecov.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/bowtie-alignreads.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/custom-bash.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/extract-fastq.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/fastqc-results-trigger.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/fastqc.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/fastx-quality-stats.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/get-file-by-name.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/iaintersect.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/linux-sort.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/macs2-callpeak-biowardrobe-only.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/makegff.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/python-get-stat-chipseq.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/python-make-biowardrobe-isoforms.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/rename.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/rose.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/rsem-calculate-expression.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/samtools-rmdup.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/samtools-sort-index.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/trimmomatic.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/ucsc-bedgraphtobigwig.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  copying cwl_airflow/tests/cwl/tools/ucsc-bedtobigbed.cwl -> build/lib/cwl_airflow/tests/cwl/tools
  creating build/lib/cwl_airflow/tests/cwl/workflows
  copying cwl_airflow/tests/cwl/workflows/chipseq-se.cwl -> build/lib/cwl_airflow/tests/cwl/workflows
  copying cwl_airflow/tests/cwl/workflows/super-enhancer.cwl -> build/lib/cwl_airflow/tests/cwl/workflows
  copying cwl_airflow/tests/cwl/workflows/xenbase-rnaseq-se.cwl -> build/lib/cwl_airflow/tests/cwl/workflows
  creating build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/TruSeq3-SE.fa -> build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam -> build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam.bai -> build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out_macs_peaks_iaintersect.tsv -> build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/chrNameLength.txt -> build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/dm3_chr4.tsv -> build/lib/cwl_airflow/tests/data
  copying cwl_airflow/tests/data/upstream.fastq -> build/lib/cwl_airflow/tests/data
  creating build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/bowtie-build.json -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.1.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.2.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.3.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.4.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.1.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.2.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4
  creating build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.1.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.2.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.3.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.4.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.log -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.1.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.2.ebwt -> build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo
  creating build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.1.bt2 -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.2.bt2 -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.3.bt2 -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.4.bt2 -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.chrlist -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.grp -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.idx.fa -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.n2g.idx.fa -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.1.bt2 -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.2.bt2 -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.seq -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.ti -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.transcripts.fa -> build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  creating build/lib/cwl_airflow/tests/job
  copying cwl_airflow/tests/job/chipseq-se.json -> build/lib/cwl_airflow/tests/job
  copying cwl_airflow/tests/job/super-enhancer.json -> build/lib/cwl_airflow/tests/job
  copying cwl_airflow/tests/job/xenbase-rnaseq-se.json -> build/lib/cwl_airflow/tests/job
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/cwl_airflow
  copying build/lib/cwl_airflow/create_dag.py -> build/bdist.linux-armv7l/wheel/cwl_airflow
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/dag_components
  copying build/lib/cwl_airflow/dag_components/jobcleanup.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/dag_components
  copying build/lib/cwl_airflow/dag_components/cwldag.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/dag_components
  copying build/lib/cwl_airflow/dag_components/__init__.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/dag_components
  copying build/lib/cwl_airflow/dag_components/cwlstepoperator.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/dag_components
  copying build/lib/cwl_airflow/dag_components/jobdispatcher.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/dag_components
  copying build/lib/cwl_airflow/git_version -> build/bdist.linux-armv7l/wheel/cwl_airflow
  copying build/lib/cwl_airflow/__init__.py -> build/bdist.linux-armv7l/wheel/cwl_airflow
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/makegff.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/rename.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/iaintersect.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/get-file-by-name.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/ucsc-bedtobigbed.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/bedtools-genomecov.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/extract-fastq.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/atdp.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/python-make-biowardrobe-isoforms.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/ucsc-bedgraphtobigwig.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/trimmomatic.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/bowtie-alignreads.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/samtools-sort-index.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/samtools-rmdup.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/fastqc.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/rsem-calculate-expression.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/linux-sort.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/fastx-quality-stats.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/python-get-stat-chipseq.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/macs2-callpeak-biowardrobe-only.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/custom-bash.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/rose.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  copying build/lib/cwl_airflow/tests/cwl/tools/fastqc-results-trigger.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/tools
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/subworkflows
  copying build/lib/cwl_airflow/tests/cwl/subworkflows/bam-bedgraph-bigwig.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/subworkflows
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/workflows
  copying build/lib/cwl_airflow/tests/cwl/workflows/xenbase-rnaseq-se.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/workflows
  copying build/lib/cwl_airflow/tests/cwl/workflows/chipseq-se.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/workflows
  copying build/lib/cwl_airflow/tests/cwl/workflows/super-enhancer.cwl -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/cwl/workflows
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  copying build/lib/cwl_airflow/tests/data/upstream.fastq -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  copying build/lib/cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam.bai -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.2.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.3.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.1.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/bowtie-build.json -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.4.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.1.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.2.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_chr4
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.2.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.3.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.log -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.1.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.4.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.1.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.2.ebwt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/bowtie_dm3_ribo
  copying build/lib/cwl_airflow/tests/data/TruSeq3-SE.fa -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  copying build/lib/cwl_airflow/tests/data/chrNameLength.txt -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  copying build/lib/cwl_airflow/tests/data/dm3_chr4.tsv -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  copying build/lib/cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out_macs_peaks_iaintersect.tsv -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.chrlist -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.1.bt2 -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.seq -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.4.bt2 -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.ti -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.n2g.idx.fa -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.2.bt2 -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.idx.fa -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.grp -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.1.bt2 -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.3.bt2 -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.2.bt2 -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.transcripts.fa -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4
  copying build/lib/cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/data
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/tests/job
  copying build/lib/cwl_airflow/tests/job/xenbase-rnaseq-se.json -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/job
  copying build/lib/cwl_airflow/tests/job/chipseq-se.json -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/job
  copying build/lib/cwl_airflow/tests/job/super-enhancer.json -> build/bdist.linux-armv7l/wheel/cwl_airflow/tests/job
  creating build/bdist.linux-armv7l/wheel/cwl_airflow/utils
  copying build/lib/cwl_airflow/utils/mute.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/utils
  copying build/lib/cwl_airflow/utils/logger.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/utils
  copying build/lib/cwl_airflow/utils/func.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/utils
  copying build/lib/cwl_airflow/utils/__init__.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/utils
  copying build/lib/cwl_airflow/utils/utils.py -> build/bdist.linux-armv7l/wheel/cwl_airflow/utils
  copying build/lib/cwl_airflow/main.py -> build/bdist.linux-armv7l/wheel/cwl_airflow
  running install_egg_info
  Copying cwl_airflow.egg-info to build/bdist.linux-armv7l/wheel/cwl_airflow-1.0.8-py3.4.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/cwl_airflow-1.0.8.dist-info/WHEEL
  creating '/tmp/pip-wheel-z501ttdb/cwl_airflow-1.0.8-py3-none-any.whl' and adding '.' to it
  adding 'cwl_airflow/__init__.py'
  adding 'cwl_airflow/create_dag.py'
  adding 'cwl_airflow/git_version'
  adding 'cwl_airflow/main.py'
  adding 'cwl_airflow/dag_components/__init__.py'
  adding 'cwl_airflow/dag_components/cwldag.py'
  adding 'cwl_airflow/dag_components/cwlstepoperator.py'
  adding 'cwl_airflow/dag_components/jobcleanup.py'
  adding 'cwl_airflow/dag_components/jobdispatcher.py'
  adding 'cwl_airflow/tests/cwl/subworkflows/bam-bedgraph-bigwig.cwl'
  adding 'cwl_airflow/tests/cwl/tools/atdp.cwl'
  adding 'cwl_airflow/tests/cwl/tools/bedtools-genomecov.cwl'
  adding 'cwl_airflow/tests/cwl/tools/bowtie-alignreads.cwl'
  adding 'cwl_airflow/tests/cwl/tools/custom-bash.cwl'
  adding 'cwl_airflow/tests/cwl/tools/extract-fastq.cwl'
  adding 'cwl_airflow/tests/cwl/tools/fastqc-results-trigger.cwl'
  adding 'cwl_airflow/tests/cwl/tools/fastqc.cwl'
  adding 'cwl_airflow/tests/cwl/tools/fastx-quality-stats.cwl'
  adding 'cwl_airflow/tests/cwl/tools/get-file-by-name.cwl'
  adding 'cwl_airflow/tests/cwl/tools/iaintersect.cwl'
  adding 'cwl_airflow/tests/cwl/tools/linux-sort.cwl'
  adding 'cwl_airflow/tests/cwl/tools/macs2-callpeak-biowardrobe-only.cwl'
  adding 'cwl_airflow/tests/cwl/tools/makegff.cwl'
  adding 'cwl_airflow/tests/cwl/tools/python-get-stat-chipseq.cwl'
  adding 'cwl_airflow/tests/cwl/tools/python-make-biowardrobe-isoforms.cwl'
  adding 'cwl_airflow/tests/cwl/tools/rename.cwl'
  adding 'cwl_airflow/tests/cwl/tools/rose.cwl'
  adding 'cwl_airflow/tests/cwl/tools/rsem-calculate-expression.cwl'
  adding 'cwl_airflow/tests/cwl/tools/samtools-rmdup.cwl'
  adding 'cwl_airflow/tests/cwl/tools/samtools-sort-index.cwl'
  adding 'cwl_airflow/tests/cwl/tools/trimmomatic.cwl'
  adding 'cwl_airflow/tests/cwl/tools/ucsc-bedgraphtobigwig.cwl'
  adding 'cwl_airflow/tests/cwl/tools/ucsc-bedtobigbed.cwl'
  adding 'cwl_airflow/tests/cwl/workflows/chipseq-se.cwl'
  adding 'cwl_airflow/tests/cwl/workflows/super-enhancer.cwl'
  adding 'cwl_airflow/tests/cwl/workflows/xenbase-rnaseq-se.cwl'
  adding 'cwl_airflow/tests/data/TruSeq3-SE.fa'
  adding 'cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam'
  adding 'cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam.bai'
  adding 'cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out_macs_peaks_iaintersect.tsv'
  adding 'cwl_airflow/tests/data/chrNameLength.txt'
  adding 'cwl_airflow/tests/data/dm3_chr4.tsv'
  adding 'cwl_airflow/tests/data/upstream.fastq'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/bowtie-build.json'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.1.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.2.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.3.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.4.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.1.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.2.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.1.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.2.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.3.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.4.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.log'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.1.ebwt'
  adding 'cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.2.ebwt'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.1.bt2'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.2.bt2'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.3.bt2'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.4.bt2'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.chrlist'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.grp'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.idx.fa'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.n2g.idx.fa'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.1.bt2'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.2.bt2'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.seq'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.ti'
  adding 'cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.transcripts.fa'
  adding 'cwl_airflow/tests/job/chipseq-se.json'
  adding 'cwl_airflow/tests/job/super-enhancer.json'
  adding 'cwl_airflow/tests/job/xenbase-rnaseq-se.json'
  adding 'cwl_airflow/utils/__init__.py'
  adding 'cwl_airflow/utils/func.py'
  adding 'cwl_airflow/utils/logger.py'
  adding 'cwl_airflow/utils/mute.py'
  adding 'cwl_airflow/utils/utils.py'
  adding 'cwl_airflow-1.0.8.dist-info/entry_points.txt'
  adding 'cwl_airflow-1.0.8.dist-info/top_level.txt'
  adding 'cwl_airflow-1.0.8.dist-info/WHEEL'
  adding 'cwl_airflow-1.0.8.dist-info/METADATA'
  adding 'cwl_airflow-1.0.8.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for cwl-airflow: finished with status 'done'
  Stored in directory: /tmp/tmp53c9ljlr
Successfully built cwl-airflow
Cleaning up...
  Removing source in /tmp/pip-wheel-f5zcikf_/cwl-airflow