Created temporary directory: /tmp/pip-ephem-wheel-cache-tx95uzdn Created temporary directory: /tmp/pip-wheel-x81heui4 Looking in indexes: https://pypi.python.org/simple Collecting isovar==0.9.0 1 location(s) to search for versions of isovar: * https://pypi.python.org/simple/isovar/ Getting page https://pypi.python.org/simple/isovar/ Analyzing links from page https://pypi.org/simple/isovar/ Found link https://files.pythonhosted.org/packages/b6/80/350ac9b97f7c872d7f2422a11bdb228a0286661fe2983884724735bff630/isovar-0.0.5.tar.gz#sha256=8b4ea15ecdb8eb81c91c75cd14a12a52cd46805b60a4df7916b68c68528d5cc5 (from https://pypi.org/simple/isovar/), version: 0.0.5 Found link https://files.pythonhosted.org/packages/09/7c/e80ccfcab66948d3c69dd70159439be76843cfcc08421a7b0e50248a6c34/isovar-0.0.6.tar.gz#sha256=ff9bd3e75528ce05eb68e63cf0bbfde925450332b01a0cbb5528c74ca9fe315c (from https://pypi.org/simple/isovar/), version: 0.0.6 Found link https://files.pythonhosted.org/packages/ac/c8/a208dbd44c8e1010147b662a62fc5cb4114024eebb5a47dd9da1beca8aa8/isovar-0.1.0.tar.gz#sha256=7f27e6a1cfef46e7bbc082421ebabaf2d33c7a40bbfa662862333fdc231c76b8 (from https://pypi.org/simple/isovar/), version: 0.1.0 Found link https://files.pythonhosted.org/packages/f8/2c/7217a7fe510804c536a379cf7e66cf92fb056bb5d9a552de1d4774d6fe12/isovar-0.1.3.tar.gz#sha256=14839dea5ecd8f3387443d04a70a104c7dcae7c51dd20f9912dcd63592cef885 (from https://pypi.org/simple/isovar/), version: 0.1.3 Found link https://files.pythonhosted.org/packages/1d/1f/d51e079dd9a1d9c572405e64b25feffdcdeefac96786451d4caa1bab671e/isovar-0.1.5.tar.gz#sha256=42384cd8f112fd174b93478100b30e340f9913249bcd80ec0e3c41d35acc66a9 (from https://pypi.org/simple/isovar/), version: 0.1.5 Found link https://files.pythonhosted.org/packages/ff/ae/5df86c7a7f4449949dfc43961e50ac47963582c303b40659a1762feb14c2/isovar-0.2.0.tar.gz#sha256=c6be73c69b4275d467125a3e21fe2e611680194fddadc846010a12f9e59159ea (from https://pypi.org/simple/isovar/), version: 0.2.0 Found link https://files.pythonhosted.org/packages/ab/e1/110b3dab08491c53f28a69c65c9effd112c0ae4a9412a6ff3328655dee91/isovar-0.2.1.tar.gz#sha256=44c15a74c0f438a6b8c218c3728abe6e010008033a5bd96ab88ac91b84d4f913 (from https://pypi.org/simple/isovar/), version: 0.2.1 Found link https://files.pythonhosted.org/packages/03/ac/1627b0180ffd2aff813066e0f455d65c49d13e1774e944dfc29726c247b0/isovar-0.2.2.tar.gz#sha256=7e8bf883539d8c2a6abbd8a9990fcdb6c7437e9d2ec79115a5e60c59db828ee0 (from https://pypi.org/simple/isovar/), version: 0.2.2 Found link https://files.pythonhosted.org/packages/72/bf/82e36d137b0866be27e0a27c1545fa4fb0b519e1aac31734b239fff5bff9/isovar-0.2.3.tar.gz#sha256=e65c1f1ccda0022b405216e0723559ed999b7c24cbc4362a9f36f8e0da69932f (from https://pypi.org/simple/isovar/), version: 0.2.3 Found link https://files.pythonhosted.org/packages/ef/24/21c68468b0b1130123aadc8451be794806adf0ebc7a63f8eb0e0ad30fca3/isovar-0.2.4.tar.gz#sha256=95037eecdfff842c18a3c7e8387aae9955ecc885bf878da4f524b16d6fb16c4e (from https://pypi.org/simple/isovar/), version: 0.2.4 Found link https://files.pythonhosted.org/packages/d7/d7/b4749eb20a87bd034eae20ee564eb8d69a109a3c74ddfd0044a4ad9e4d0a/isovar-0.4.0.tar.gz#sha256=afc88c76b24d74cd7c524bf7f95fff271725580afbf0dd1be3580ecc952d0d87 (from https://pypi.org/simple/isovar/), version: 0.4.0 Found link https://files.pythonhosted.org/packages/1e/5a/5dc4f54bb9d10f3bd3755b5e87bfd51b33f5c538b69af6d807509698a297/isovar-0.5.0.tar.gz#sha256=316fabbf98c1c7d13fb919568064c42a223e1b1d0697582f76b50a6fb4caeb69 (from https://pypi.org/simple/isovar/), version: 0.5.0 Found link https://files.pythonhosted.org/packages/c9/a1/c06698d8df3d589ba44819394d4c78273c81d6472135fe96ce73b01f33b3/isovar-0.5.2.tar.gz#sha256=8b5a18823fb0cf804aa9be8fef3741d522516c187063f4c9573c9a815ee89fa6 (from https://pypi.org/simple/isovar/), version: 0.5.2 Found link https://files.pythonhosted.org/packages/19/c9/6e8f71fb30ac619216f5ccbf0a444ba2cf19fc0e9955c5d1ef8984e01264/isovar-0.6.0.tar.gz#sha256=ec17ab2f0074dccc7a1f415dce68dbfed45fcc9cb8bf91348b5719b09440f21a (from https://pypi.org/simple/isovar/), version: 0.6.0 Found link https://files.pythonhosted.org/packages/a2/c7/c98501932e9bf937a69d9f13cd3cdc91b92936520f2f27d3c3961bf14c2f/isovar-0.6.1.tar.gz#sha256=4096fcd21243a816305d14cc1bc9770692673610164f7765dd1262e564d1eb06 (from https://pypi.org/simple/isovar/), version: 0.6.1 Found link https://files.pythonhosted.org/packages/b3/6e/66e364fe1888d0a1c57e34142d1a10c17c2a74fec1d2ac2229c7f8405ec3/isovar-0.7.0.tar.gz#sha256=d5e22cefdfe9d6d719265034c045b075b449722e4cf221f6ff9626910befdd3e (from https://pypi.org/simple/isovar/), version: 0.7.0 Found link https://files.pythonhosted.org/packages/27/84/9251647726f83d32a9af94b54e9faacd046b9ecca0cd415f436acde977b9/isovar-0.7.1.tar.gz#sha256=d02b2b55d2c17f5c9572efa64cfbe9be0f977873388cc178f5cf53c342a79e32 (from https://pypi.org/simple/isovar/), version: 0.7.1 Found link https://files.pythonhosted.org/packages/b0/1c/c0f91c7c46aac659e075d34e0d55a05c5dbfd38727a4ee39911f6bf7d1e6/isovar-0.7.2.tar.gz#sha256=1b1de7e58b622847e4bd50b984e51ea5a1250e7d9e96cf985ef1ddc16c4c9dcf (from https://pypi.org/simple/isovar/), version: 0.7.2 Found link https://files.pythonhosted.org/packages/0e/f2/dc74cc8ce342d8ea408452ebda0ad498f1879c28e2d01b42f96e8ea7cba1/isovar-0.7.3.tar.gz#sha256=691a6afd8b1b1d9f7641e6f9cf222ee9c4848d34dbc8d5972d321aaddcb1fd40 (from https://pypi.org/simple/isovar/), version: 0.7.3 Found link https://files.pythonhosted.org/packages/0d/3c/f7108c0b1aba27d58b30075287874b88b194cc34ba8938a89cfdc40fbc19/isovar-0.7.4.tar.gz#sha256=25755c3d3dd8318e8d270aff73018a055e3c6529c8e2cc7f19132b11bd07f901 (from https://pypi.org/simple/isovar/), version: 0.7.4 Found link https://files.pythonhosted.org/packages/71/d3/bae7fe9f6548b2a6f7824dd3eca34fab47971070b8a5559f1c8ba80f263a/isovar-0.7.5.tar.gz#sha256=0baae9610a7f92e81ed2363a7a2c53ca3e86c906002d2cb7e3b7d8211711df8e (from https://pypi.org/simple/isovar/), version: 0.7.5 Found link https://files.pythonhosted.org/packages/76/78/807f6ebeb5f5ecb974093a18e62e7cb70695d55289448df65495be290052/isovar-0.8.0.tar.gz#sha256=1a3fb85efafdd25a722b48fa4ff1e666386c4170aaacef0590437f1a9781b10a (from https://pypi.org/simple/isovar/), version: 0.8.0 Found link https://files.pythonhosted.org/packages/8d/8d/231aa93b4e2668cb701253e8b3b62c0a8cf0d76d5570ebd80999ee1d1240/isovar-0.8.1.tar.gz#sha256=abdd8e330f701bafd11bfaea93b029dda46407b6d3af1173ca058b9b23be6e2f (from https://pypi.org/simple/isovar/), version: 0.8.1 Found link https://files.pythonhosted.org/packages/37/33/79dad79cecfc192bdbd65593c0ebf693ab7ca44aeba59f6fcda3e2933f21/isovar-0.8.2.tar.gz#sha256=cd497c9da5ef905817067fb6227f3ce82210e9ac94c29328fa2a718767b947f4 (from https://pypi.org/simple/isovar/), version: 0.8.2 Found link https://files.pythonhosted.org/packages/8c/ab/99e3ac9a148d0acd27abf5e6d640eba635cdfdeacd876bee1bf27c0bf05f/isovar-0.8.3.tar.gz#sha256=058d80ecce80e038f422f40194a771256fd160f999fc9960f4193057b6ca5b33 (from https://pypi.org/simple/isovar/), version: 0.8.3 Found link https://files.pythonhosted.org/packages/da/ed/1f4d8fed9c2cc26b80124726bd7dd40d4f5b7e5b8afdadb8a62077bd58a1/isovar-0.8.5.tar.gz#sha256=da09d3b613bbca7e1a071898f42eb8d95a3894619fb4f110b183ccf615d48cb0 (from https://pypi.org/simple/isovar/), version: 0.8.5 Found link https://files.pythonhosted.org/packages/54/91/402d3e534b4b063e6fbba41ae872627ed3e67b0ad1246f9721eb652f2237/isovar-0.9.0.tar.gz#sha256=07419044b6349800ca8f0c88299e86f321e41984259547cbf59fe6d6ac97c837 (from https://pypi.org/simple/isovar/), version: 0.9.0 Using version 0.9.0 (newest of versions: 0.9.0) Created temporary directory: /tmp/pip-unpack-2zw2zg2p Downloading https://files.pythonhosted.org/packages/54/91/402d3e534b4b063e6fbba41ae872627ed3e67b0ad1246f9721eb652f2237/isovar-0.9.0.tar.gz (63kB) Downloading from URL https://files.pythonhosted.org/packages/54/91/402d3e534b4b063e6fbba41ae872627ed3e67b0ad1246f9721eb652f2237/isovar-0.9.0.tar.gz#sha256=07419044b6349800ca8f0c88299e86f321e41984259547cbf59fe6d6ac97c837 (from https://pypi.org/simple/isovar/) Running setup.py (path:/tmp/pip-wheel-x81heui4/isovar/setup.py) egg_info for package isovar Running command python setup.py egg_info Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- WARNING:root:Conversion of long_description from MD to RST failed running egg_info creating pip-egg-info/isovar.egg-info writing dependency_links to pip-egg-info/isovar.egg-info/dependency_links.txt writing pip-egg-info/isovar.egg-info/PKG-INFO writing requirements to pip-egg-info/isovar.egg-info/requires.txt writing top-level names to pip-egg-info/isovar.egg-info/top_level.txt writing entry points to pip-egg-info/isovar.egg-info/entry_points.txt writing manifest file 'pip-egg-info/isovar.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/isovar.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/isovar.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-x81heui4/isovar has version 0.9.0, which satisfies requirement isovar==0.9.0 from https://files.pythonhosted.org/packages/54/91/402d3e534b4b063e6fbba41ae872627ed3e67b0ad1246f9721eb652f2237/isovar-0.9.0.tar.gz#sha256=07419044b6349800ca8f0c88299e86f321e41984259547cbf59fe6d6ac97c837 Building wheels for collected packages: isovar Created temporary directory: /tmp/pip-wheel-gfk0cq7u Running setup.py bdist_wheel for isovar: started Destination directory: /tmp/pip-wheel-gfk0cq7u Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-x81heui4/isovar/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-gfk0cq7u Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- WARNING:root:Conversion of long_description from MD to RST failed running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/isovar copying isovar/reference_context.py -> build/lib/isovar copying isovar/common.py -> build/lib/isovar copying isovar/reference_sequence_key.py -> build/lib/isovar copying isovar/variant_helpers.py -> build/lib/isovar copying isovar/locus_reads.py -> build/lib/isovar copying isovar/string_helpers.py -> build/lib/isovar copying isovar/assembly.py -> build/lib/isovar copying isovar/genetic_code.py -> build/lib/isovar copying isovar/logging.py -> build/lib/isovar copying isovar/allele_counts.py -> build/lib/isovar copying isovar/variant_sequences.py -> build/lib/isovar copying isovar/reference_coding_sequence_key.py -> build/lib/isovar copying isovar/effect_prediction.py -> build/lib/isovar copying isovar/variant_reads.py -> build/lib/isovar copying isovar/__init__.py -> build/lib/isovar copying isovar/allele_reads.py -> build/lib/isovar copying isovar/translation.py -> build/lib/isovar copying isovar/read_helpers.py -> build/lib/isovar copying isovar/value_object.py -> build/lib/isovar copying isovar/variant_sequence_in_reading_frame.py -> build/lib/isovar copying isovar/default_parameters.py -> build/lib/isovar copying isovar/dna.py -> build/lib/isovar copying isovar/dataframe_builder.py -> build/lib/isovar copying isovar/nucleotide_counts.py -> build/lib/isovar copying isovar/protein_sequences.py -> build/lib/isovar creating build/lib/isovar/cli copying isovar/cli/rna_args.py -> build/lib/isovar/cli copying isovar/cli/isovar_translations.py -> build/lib/isovar/cli copying isovar/cli/variant_sequences_args.py -> build/lib/isovar/cli copying isovar/cli/translation_args.py -> build/lib/isovar/cli copying isovar/cli/isovar_reference_contexts.py -> build/lib/isovar/cli copying isovar/cli/isovar_allele_counts.py -> build/lib/isovar/cli copying isovar/cli/isovar_protein_sequences.py -> build/lib/isovar/cli copying isovar/cli/reference_context_args.py -> build/lib/isovar/cli copying isovar/cli/protein_sequence_args.py -> build/lib/isovar/cli copying isovar/cli/output_args.py -> build/lib/isovar/cli copying isovar/cli/__init__.py -> build/lib/isovar/cli copying isovar/cli/isovar_allele_reads.py -> build/lib/isovar/cli copying isovar/cli/isovar_variant_sequences.py -> build/lib/isovar/cli copying isovar/cli/isovar_variant_reads.py -> build/lib/isovar/cli copying isovar/logging.conf -> build/lib/isovar installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/reference_context.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/common.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/reference_sequence_key.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/variant_helpers.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/locus_reads.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/string_helpers.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/assembly.py -> build/bdist.linux-armv7l/wheel/isovar creating build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/rna_args.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_translations.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/variant_sequences_args.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/translation_args.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_reference_contexts.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_allele_counts.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_protein_sequences.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/reference_context_args.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/protein_sequence_args.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/output_args.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/__init__.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_allele_reads.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_variant_sequences.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/cli/isovar_variant_reads.py -> build/bdist.linux-armv7l/wheel/isovar/cli copying build/lib/isovar/genetic_code.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/logging.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/allele_counts.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/variant_sequences.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/reference_coding_sequence_key.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/effect_prediction.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/logging.conf -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/variant_reads.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/__init__.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/allele_reads.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/translation.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/read_helpers.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/value_object.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/variant_sequence_in_reading_frame.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/default_parameters.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/dna.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/dataframe_builder.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/nucleotide_counts.py -> build/bdist.linux-armv7l/wheel/isovar copying build/lib/isovar/protein_sequences.py -> build/bdist.linux-armv7l/wheel/isovar running install_egg_info running egg_info writing requirements to isovar.egg-info/requires.txt writing entry points to isovar.egg-info/entry_points.txt writing isovar.egg-info/PKG-INFO writing top-level names to isovar.egg-info/top_level.txt writing dependency_links to isovar.egg-info/dependency_links.txt reading manifest file 'isovar.egg-info/SOURCES.txt' writing manifest file 'isovar.egg-info/SOURCES.txt' Copying isovar.egg-info to build/bdist.linux-armv7l/wheel/isovar-0.9.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/isovar-0.9.0.dist-info/WHEEL creating '/tmp/pip-wheel-gfk0cq7u/isovar-0.9.0-py3-none-any.whl' and adding '.' to it adding 'isovar/__init__.py' adding 'isovar/allele_counts.py' adding 'isovar/allele_reads.py' adding 'isovar/assembly.py' adding 'isovar/common.py' adding 'isovar/dataframe_builder.py' adding 'isovar/default_parameters.py' adding 'isovar/dna.py' adding 'isovar/effect_prediction.py' adding 'isovar/genetic_code.py' adding 'isovar/locus_reads.py' adding 'isovar/logging.conf' adding 'isovar/logging.py' adding 'isovar/nucleotide_counts.py' adding 'isovar/protein_sequences.py' adding 'isovar/read_helpers.py' adding 'isovar/reference_coding_sequence_key.py' adding 'isovar/reference_context.py' adding 'isovar/reference_sequence_key.py' adding 'isovar/string_helpers.py' adding 'isovar/translation.py' adding 'isovar/value_object.py' adding 'isovar/variant_helpers.py' adding 'isovar/variant_reads.py' adding 'isovar/variant_sequence_in_reading_frame.py' adding 'isovar/variant_sequences.py' adding 'isovar/cli/__init__.py' adding 'isovar/cli/isovar_allele_counts.py' adding 'isovar/cli/isovar_allele_reads.py' adding 'isovar/cli/isovar_protein_sequences.py' adding 'isovar/cli/isovar_reference_contexts.py' adding 'isovar/cli/isovar_translations.py' adding 'isovar/cli/isovar_variant_reads.py' adding 'isovar/cli/isovar_variant_sequences.py' adding 'isovar/cli/output_args.py' adding 'isovar/cli/protein_sequence_args.py' adding 'isovar/cli/reference_context_args.py' adding 'isovar/cli/rna_args.py' adding 'isovar/cli/translation_args.py' adding 'isovar/cli/variant_sequences_args.py' adding 'isovar-0.9.0.dist-info/entry_points.txt' adding 'isovar-0.9.0.dist-info/top_level.txt' adding 'isovar-0.9.0.dist-info/WHEEL' adding 'isovar-0.9.0.dist-info/METADATA' adding 'isovar-0.9.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for isovar: finished with status 'done' Stored in directory: /tmp/tmpzhctyf3m Successfully built isovar Cleaning up... Removing source in /tmp/pip-wheel-x81heui4/isovar