Created temporary directory: /tmp/pip-ephem-wheel-cache-mwjnt9qc Created temporary directory: /tmp/pip-req-tracker-dcr3yk_9 Created requirements tracker '/tmp/pip-req-tracker-dcr3yk_9' Created temporary directory: /tmp/pip-wheel-khdur6bk Looking in indexes: https://pypi.python.org/simple Collecting dnachisel==0.1.5 1 location(s) to search for versions of dnachisel: * https://pypi.python.org/simple/dnachisel/ Getting page https://pypi.python.org/simple/dnachisel/ Analyzing links from page https://pypi.org/simple/dnachisel/ Found link https://files.pythonhosted.org/packages/05/47/a96748f3a5b7244f0831e226d5e41739a4d5e9ce407bbc8a2780a75aaff9/dnachisel-0.1.0.tar.gz#sha256=3e29be2c321e7ae621b34793426ab8b71280d00de23e94187f838b48aab77f71 (from https://pypi.org/simple/dnachisel/), version: 0.1.0 Found link https://files.pythonhosted.org/packages/f1/47/a7e5698b69ef6ccff6f92c2114b5d4274fafd847309180e643a0463c71ad/dnachisel-0.1.1.tar.gz#sha256=e690b1f009fa9e425a2fd27682b07ebdc1b961f24c1e281ed3932ef1fb22f615 (from https://pypi.org/simple/dnachisel/), version: 0.1.1 Found link https://files.pythonhosted.org/packages/44/f2/2ca105de7874b06905dca1ce5889c8523a2c76bc940383cd41ea5e63384a/dnachisel-0.1.2.tar.gz#sha256=305dc43d68e82de30009b53b9092064e6dfbcc65878209ab77a20d7ca79c52b9 (from https://pypi.org/simple/dnachisel/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/a2/41/df1ebdb209906aa5339e4e07844efd206cdeb535ed3d158d247ee183346b/dnachisel-0.1.3.tar.gz#sha256=2e0871c16a4bacf9a929d592aef721c48ab47a46abff979102b4399b3587d2db (from https://pypi.org/simple/dnachisel/), version: 0.1.3 Found link https://files.pythonhosted.org/packages/05/8d/6fa334dd787e19a6c059b8b40435c0a92041ecdd350f4d3a3729a0b15380/dnachisel-0.1.4.tar.gz#sha256=6c91dc8d757493f824ad5a876caed7bc61a41d04556e653d05889e2cef8180b0 (from https://pypi.org/simple/dnachisel/), version: 0.1.4 Found link https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz#sha256=d4ff87e073de5d8a6d119f6ef5e26b40244896f3d1b6a3655a0377e4d45863bd (from https://pypi.org/simple/dnachisel/), version: 0.1.5 Using version 0.1.5 (newest of versions: 0.1.5) Created temporary directory: /tmp/pip-unpack-kydggqpo Downloading https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz (1.0MB) Downloading from URL https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz#sha256=d4ff87e073de5d8a6d119f6ef5e26b40244896f3d1b6a3655a0377e4d45863bd (from https://pypi.org/simple/dnachisel/) Added dnachisel==0.1.5 from https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz#sha256=d4ff87e073de5d8a6d119f6ef5e26b40244896f3d1b6a3655a0377e4d45863bd to build tracker '/tmp/pip-req-tracker-dcr3yk_9' Running setup.py (path:/tmp/pip-wheel-khdur6bk/dnachisel/setup.py) egg_info for package dnachisel Running command python setup.py egg_info running egg_info creating pip-egg-info/dnachisel.egg-info writing top-level names to pip-egg-info/dnachisel.egg-info/top_level.txt writing pip-egg-info/dnachisel.egg-info/PKG-INFO writing dependency_links to pip-egg-info/dnachisel.egg-info/dependency_links.txt writing requirements to pip-egg-info/dnachisel.egg-info/requires.txt writing manifest file 'pip-egg-info/dnachisel.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/dnachisel.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/dnachisel.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-khdur6bk/dnachisel has version 0.1.5, which satisfies requirement dnachisel==0.1.5 from https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz#sha256=d4ff87e073de5d8a6d119f6ef5e26b40244896f3d1b6a3655a0377e4d45863bd Removed dnachisel==0.1.5 from https://files.pythonhosted.org/packages/9d/a3/b300e0794e4d26492d5bb17f48d4acb9f5e9ad5a09393ae21e126e2cc38a/dnachisel-0.1.5.tar.gz#sha256=d4ff87e073de5d8a6d119f6ef5e26b40244896f3d1b6a3655a0377e4d45863bd from build tracker '/tmp/pip-req-tracker-dcr3yk_9' Building wheels for collected packages: dnachisel Created temporary directory: /tmp/pip-wheel-gkwdxl95 Running setup.py bdist_wheel for dnachisel: started Destination directory: /tmp/pip-wheel-gkwdxl95 Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-khdur6bk/dnachisel/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-gkwdxl95 running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/dnachisel copying dnachisel/DnaOptimizationProblem.py -> build/lib/dnachisel copying dnachisel/MutationSpace.py -> build/lib/dnachisel copying dnachisel/SpecEvaluation.py -> build/lib/dnachisel copying dnachisel/Location.py -> build/lib/dnachisel copying dnachisel/SequencePattern.py -> build/lib/dnachisel copying dnachisel/Specification.py -> build/lib/dnachisel copying dnachisel/__init__.py -> build/lib/dnachisel copying dnachisel/version.py -> build/lib/dnachisel creating build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/TerminalSpecification.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/AvoidChanges.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/PatternSpecification.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/AvoidPattern.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/CodonSpecification.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforceGCContent.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/AvoidNonUniqueSegments.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/VoidSpecification.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/CodonOptimize.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforceChoice.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/AvoidHairpins.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/__init__.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforceTranslation.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/AvoidStopCodons.py -> build/lib/dnachisel/builtin_specifications copying dnachisel/builtin_specifications/EnforceSequence.py -> build/lib/dnachisel/builtin_specifications creating build/lib/dnachisel/biotools copying dnachisel/biotools/biotables.py -> build/lib/dnachisel/biotools copying dnachisel/biotools/biotools.py -> build/lib/dnachisel/biotools copying dnachisel/biotools/features_annotations.py -> build/lib/dnachisel/biotools copying dnachisel/biotools/__init__.py -> build/lib/dnachisel/biotools creating build/lib/dnachisel/reports copying dnachisel/reports/constraints_reports.py -> build/lib/dnachisel/reports copying dnachisel/reports/optimization_reports.py -> build/lib/dnachisel/reports copying dnachisel/reports/__init__.py -> build/lib/dnachisel/reports creating build/lib/dnachisel/utils copying dnachisel/utils/utils.py -> build/lib/dnachisel/utils copying dnachisel/utils/__init__.py -> build/lib/dnachisel/utils running egg_info writing dependency_links to dnachisel.egg-info/dependency_links.txt writing dnachisel.egg-info/PKG-INFO writing requirements to dnachisel.egg-info/requires.txt writing top-level names to dnachisel.egg-info/top_level.txt reading manifest file 'dnachisel.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'dnachisel.egg-info/SOURCES.txt' creating build/lib/dnachisel/biotools/data copying dnachisel/biotools/data/aa_long_names.csv -> build/lib/dnachisel/biotools/data copying dnachisel/biotools/data/codons_translations.csv -> build/lib/dnachisel/biotools/data copying dnachisel/biotools/data/iupac_notation.csv -> build/lib/dnachisel/biotools/data copying dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/lib/dnachisel/biotools/data creating build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/README.txt -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/b_subtilis_1423.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/c_elegans_6239.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/d_melanogaster_7227.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/e_coli_316407.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/g_gallus_9031.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/h_sapiens_9606.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/m_musculus_10090.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/m_musculus_domesticus_10092.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables copying dnachisel/biotools/data/codon_usage_tables/s_cerevisiae_4932.csv -> build/lib/dnachisel/biotools/data/codon_usage_tables creating build/lib/dnachisel/reports/assets copying dnachisel/reports/assets/logo.png -> build/lib/dnachisel/reports/assets copying dnachisel/reports/assets/optimization_report.html -> build/lib/dnachisel/reports/assets copying dnachisel/reports/assets/optimization_report.pug -> build/lib/dnachisel/reports/assets copying dnachisel/reports/assets/style.css -> build/lib/dnachisel/reports/assets running build_scripts creating build/scripts-3.5 copying and adjusting scripts/dnachisel -> build/scripts-3.5 changing mode of build/scripts-3.5/dnachisel from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/dnachisel copying build/lib/dnachisel/DnaOptimizationProblem.py -> build/bdist.linux-armv7l/wheel/dnachisel copying build/lib/dnachisel/MutationSpace.py -> build/bdist.linux-armv7l/wheel/dnachisel creating build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/TerminalSpecification.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/AvoidChanges.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/PatternSpecification.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/AvoidPattern.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/CodonSpecification.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforceGCContent.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/AvoidNonUniqueSegments.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/VoidSpecification.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/CodonOptimize.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforceChoice.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/AvoidHairpins.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/__init__.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforceTranslation.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/AvoidStopCodons.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/builtin_specifications/EnforceSequence.py -> build/bdist.linux-armv7l/wheel/dnachisel/builtin_specifications copying build/lib/dnachisel/SpecEvaluation.py -> build/bdist.linux-armv7l/wheel/dnachisel copying build/lib/dnachisel/Location.py -> build/bdist.linux-armv7l/wheel/dnachisel copying build/lib/dnachisel/SequencePattern.py -> build/bdist.linux-armv7l/wheel/dnachisel creating build/bdist.linux-armv7l/wheel/dnachisel/biotools copying build/lib/dnachisel/biotools/biotables.py -> build/bdist.linux-armv7l/wheel/dnachisel/biotools creating build/bdist.linux-armv7l/wheel/dnachisel/biotools/data copying build/lib/dnachisel/biotools/data/codons_translations.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data creating build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/s_cerevisiae_4932.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/d_melanogaster_7227.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/h_sapiens_9606.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/c_elegans_6239.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/b_subtilis_1423.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/README.txt -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/g_gallus_9031.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/m_musculus_domesticus_10092.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/m_musculus_10090.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/codon_usage_tables/e_coli_316407.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data/codon_usage_tables copying build/lib/dnachisel/biotools/data/iupac_notation.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data copying build/lib/dnachisel/biotools/data/aa_long_names.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data copying build/lib/dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/bdist.linux-armv7l/wheel/dnachisel/biotools/data copying build/lib/dnachisel/biotools/biotools.py -> build/bdist.linux-armv7l/wheel/dnachisel/biotools copying build/lib/dnachisel/biotools/features_annotations.py -> build/bdist.linux-armv7l/wheel/dnachisel/biotools copying build/lib/dnachisel/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/dnachisel/biotools copying build/lib/dnachisel/Specification.py -> build/bdist.linux-armv7l/wheel/dnachisel creating build/bdist.linux-armv7l/wheel/dnachisel/reports creating build/bdist.linux-armv7l/wheel/dnachisel/reports/assets copying build/lib/dnachisel/reports/assets/optimization_report.pug -> build/bdist.linux-armv7l/wheel/dnachisel/reports/assets copying build/lib/dnachisel/reports/assets/logo.png -> build/bdist.linux-armv7l/wheel/dnachisel/reports/assets copying build/lib/dnachisel/reports/assets/optimization_report.html -> build/bdist.linux-armv7l/wheel/dnachisel/reports/assets copying build/lib/dnachisel/reports/assets/style.css -> build/bdist.linux-armv7l/wheel/dnachisel/reports/assets copying build/lib/dnachisel/reports/constraints_reports.py -> build/bdist.linux-armv7l/wheel/dnachisel/reports copying build/lib/dnachisel/reports/optimization_reports.py -> build/bdist.linux-armv7l/wheel/dnachisel/reports copying build/lib/dnachisel/reports/__init__.py -> build/bdist.linux-armv7l/wheel/dnachisel/reports copying build/lib/dnachisel/__init__.py -> build/bdist.linux-armv7l/wheel/dnachisel creating build/bdist.linux-armv7l/wheel/dnachisel/utils copying build/lib/dnachisel/utils/utils.py -> build/bdist.linux-armv7l/wheel/dnachisel/utils copying build/lib/dnachisel/utils/__init__.py -> build/bdist.linux-armv7l/wheel/dnachisel/utils copying build/lib/dnachisel/version.py -> build/bdist.linux-armv7l/wheel/dnachisel running install_egg_info Copying dnachisel.egg-info to build/bdist.linux-armv7l/wheel/dnachisel-0.1.5-py3.5.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/dnachisel-0.1.5.data creating build/bdist.linux-armv7l/wheel/dnachisel-0.1.5.data/scripts copying build/scripts-3.5/dnachisel -> build/bdist.linux-armv7l/wheel/dnachisel-0.1.5.data/scripts changing mode of build/bdist.linux-armv7l/wheel/dnachisel-0.1.5.data/scripts/dnachisel to 755 creating build/bdist.linux-armv7l/wheel/dnachisel-0.1.5.dist-info/WHEEL Running setup.py bdist_wheel for dnachisel: finished with status 'done' Stored in directory: /tmp/tmpa93pfo8i Successfully built dnachisel Cleaning up... Removing source in /tmp/pip-wheel-khdur6bk/dnachisel Removed build tracker '/tmp/pip-req-tracker-dcr3yk_9'