Created temporary directory: /tmp/pip-ephem-wheel-cache-v3j17poa Created temporary directory: /tmp/pip-req-tracker-wbv5598j Created requirements tracker '/tmp/pip-req-tracker-wbv5598j' Created temporary directory: /tmp/pip-wheel-00j9hl5u Looking in indexes: https://pypi.python.org/simple Collecting aldy==1.2 1 location(s) to search for versions of aldy: * https://pypi.python.org/simple/aldy/ Getting page https://pypi.python.org/simple/aldy/ Analyzing links from page https://pypi.org/simple/aldy/ Found link https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b (from https://pypi.org/simple/aldy/), version: 1.2 Using version 1.2 (newest of versions: 1.2) Created temporary directory: /tmp/pip-unpack-39z19ac1 Downloading https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz (5.7MB) Downloading from URL https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b (from https://pypi.org/simple/aldy/) Added aldy==1.2 from https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b to build tracker '/tmp/pip-req-tracker-wbv5598j' Running setup.py (path:/tmp/pip-wheel-00j9hl5u/aldy/setup.py) egg_info for package aldy Running command python setup.py egg_info running egg_info creating pip-egg-info/aldy.egg-info writing dependency_links to pip-egg-info/aldy.egg-info/dependency_links.txt writing entry points to pip-egg-info/aldy.egg-info/entry_points.txt writing top-level names to pip-egg-info/aldy.egg-info/top_level.txt writing requirements to pip-egg-info/aldy.egg-info/requires.txt writing pip-egg-info/aldy.egg-info/PKG-INFO writing manifest file 'pip-egg-info/aldy.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/aldy.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/aldy.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-00j9hl5u/aldy has version 1.2, which satisfies requirement aldy==1.2 from https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b Removed aldy==1.2 from https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b from build tracker '/tmp/pip-req-tracker-wbv5598j' Building wheels for collected packages: aldy Created temporary directory: /tmp/pip-wheel-kbfofd5o Running setup.py bdist_wheel for aldy: started Destination directory: /tmp/pip-wheel-kbfofd5o Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-00j9hl5u/aldy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-kbfofd5o running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/aldy copying aldy/version.py -> build/lib/aldy copying aldy/diplotype.py -> build/lib/aldy copying aldy/lpinterface.py -> build/lib/aldy copying aldy/filtering.py -> build/lib/aldy copying aldy/common.py -> build/lib/aldy copying aldy/protein.py -> build/lib/aldy copying aldy/gene.py -> build/lib/aldy copying aldy/sam.py -> build/lib/aldy copying aldy/refiner.py -> build/lib/aldy copying aldy/cn.py -> build/lib/aldy copying aldy/__main__.py -> build/lib/aldy copying aldy/__init__.py -> build/lib/aldy copying aldy/test.py -> build/lib/aldy copying aldy/genotype.py -> build/lib/aldy creating build/lib/aldy/resources copying aldy/resources/__init__.py -> build/lib/aldy/resources creating build/lib/aldy/resources/genes copying aldy/resources/genes/__init__.py -> build/lib/aldy/resources/genes creating build/lib/aldy/resources/profiles copying aldy/resources/profiles/__init__.py -> build/lib/aldy/resources/profiles copying aldy/resources/LICENSE.md -> build/lib/aldy/resources copying aldy/resources/NA10860.bam -> build/lib/aldy/resources copying aldy/resources/NA10860.bai -> build/lib/aldy/resources copying aldy/resources/genes/cyp2c8.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2c19.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp3a4.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/tpmt.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp3a5.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/dpyd.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2c9.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2a6.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp4f2.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2d6.yml -> build/lib/aldy/resources/genes copying aldy/resources/profiles/pgrnseq-v1.profile -> build/lib/aldy/resources/profiles copying aldy/resources/profiles/illumina.profile -> build/lib/aldy/resources/profiles copying aldy/resources/profiles/pgrnseq-v2.profile -> build/lib/aldy/resources/profiles installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/version.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/diplotype.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/lpinterface.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/filtering.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/common.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/protein.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/gene.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/sam.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/refiner.py -> build/bdist.linux-armv7l/wheel/aldy creating build/bdist.linux-armv7l/wheel/aldy/resources creating build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2c8.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2c19.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp3a4.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/tpmt.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp3a5.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/dpyd.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2c9.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2a6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp4f2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2d6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/NA10860.bam -> build/bdist.linux-armv7l/wheel/aldy/resources copying build/lib/aldy/resources/NA10860.bai -> build/bdist.linux-armv7l/wheel/aldy/resources copying build/lib/aldy/resources/LICENSE.md -> build/bdist.linux-armv7l/wheel/aldy/resources copying build/lib/aldy/resources/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources creating build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/pgrnseq-v1.profile -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/illumina.profile -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/pgrnseq-v2.profile -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/cn.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/__main__.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/__init__.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/test.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/genotype.py -> build/bdist.linux-armv7l/wheel/aldy running install_egg_info running egg_info writing aldy.egg-info/PKG-INFO writing dependency_links to aldy.egg-info/dependency_links.txt writing top-level names to aldy.egg-info/top_level.txt writing entry points to aldy.egg-info/entry_points.txt writing requirements to aldy.egg-info/requires.txt reading manifest file 'aldy.egg-info/SOURCES.txt' writing manifest file 'aldy.egg-info/SOURCES.txt' Copying aldy.egg-info to build/bdist.linux-armv7l/wheel/aldy-1.2-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/aldy-1.2.dist-info/WHEEL creating '/tmp/pip-wheel-kbfofd5o/aldy-1.2-py3-none-any.whl' and adding '.' to it adding 'aldy/__init__.py' adding 'aldy/__main__.py' adding 'aldy/cn.py' adding 'aldy/common.py' adding 'aldy/diplotype.py' adding 'aldy/filtering.py' adding 'aldy/gene.py' adding 'aldy/genotype.py' adding 'aldy/lpinterface.py' adding 'aldy/protein.py' adding 'aldy/refiner.py' adding 'aldy/sam.py' adding 'aldy/test.py' adding 'aldy/version.py' adding 'aldy/resources/LICENSE.md' adding 'aldy/resources/NA10860.bai' adding 'aldy/resources/NA10860.bam' adding 'aldy/resources/__init__.py' adding 'aldy/resources/genes/__init__.py' adding 'aldy/resources/genes/cyp2a6.yml' adding 'aldy/resources/genes/cyp2c19.yml' adding 'aldy/resources/genes/cyp2c8.yml' adding 'aldy/resources/genes/cyp2c9.yml' adding 'aldy/resources/genes/cyp2d6.yml' adding 'aldy/resources/genes/cyp3a4.yml' adding 'aldy/resources/genes/cyp3a5.yml' adding 'aldy/resources/genes/cyp4f2.yml' adding 'aldy/resources/genes/dpyd.yml' adding 'aldy/resources/genes/tpmt.yml' adding 'aldy/resources/profiles/__init__.py' adding 'aldy/resources/profiles/illumina.profile' adding 'aldy/resources/profiles/pgrnseq-v1.profile' adding 'aldy/resources/profiles/pgrnseq-v2.profile' adding 'aldy-1.2.dist-info/entry_points.txt' adding 'aldy-1.2.dist-info/top_level.txt' adding 'aldy-1.2.dist-info/WHEEL' adding 'aldy-1.2.dist-info/METADATA' adding 'aldy-1.2.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for aldy: finished with status 'done' Stored in directory: /tmp/tmpdsre52zv Successfully built aldy Cleaning up... Removing source in /tmp/pip-wheel-00j9hl5u/aldy Removed build tracker '/tmp/pip-req-tracker-wbv5598j'