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https://files.pythonhosted.org/packages/13/8e/48e7b5ea5f723ce15d7609df0f89f70232c9eb658a8f5aae812195a6f298/varcode-0.5.14.tar.gz#sha256=bddfc71940212f6aaac65ff320939bef01fa5f463797dd2d47c11d55f1db3989 (from https://pypi.org/simple/varcode/), version: 0.5.14 Found link https://files.pythonhosted.org/packages/3a/f2/088d572940ebe0d1e87aee7e7a79308c8c18391124061c0d8362a56ff1e7/varcode-0.5.15.tar.gz#sha256=27b5617eaa198e3942b21ff7fd0e6eb09ff748c2a259f0ab484876dcd50291c1 (from https://pypi.org/simple/varcode/), version: 0.5.15 Found link https://files.pythonhosted.org/packages/6d/a9/52ec2cc9c68149843ecafe11656fd1e56bd034b3d9141eb2110195268b36/varcode-0.6.3.tar.gz#sha256=01bf6c964884f7c5b29c9a2d40b325125fd2f7d56d8a79d6c82457856d0daf78 (from https://pypi.org/simple/varcode/), version: 0.6.3 Found link https://files.pythonhosted.org/packages/ce/cb/a9231d05878ecb38a2bc13c85235453cb3f1c511e96d8dca8d1c3a46fdf0/varcode-0.6.6.tar.gz#sha256=294deca1e0ffb496aafd293d87e50fdfd7718fc3076580cb71f4e8cd536b9eb6 (from https://pypi.org/simple/varcode/), version: 0.6.6 Found link https://files.pythonhosted.org/packages/b4/ec/fa99085d3046c152676132969dc1bdf2baf2748dd53edaf9033516586d5f/varcode-0.7.0.tar.gz#sha256=d5e70ad58f7ecb4794b4ed7c34d04c8a7d9832f8f3402978ad4c4fc907b11964 (from https://pypi.org/simple/varcode/), version: 0.7.0 Found link https://files.pythonhosted.org/packages/b4/e5/ceda01efe4290d97b00861f9811ed1998d0e3104a0dfb77ad301cecd9ce8/varcode-0.8.0.tar.gz#sha256=31cd0178cb43a6f288b72309891471e02d73535a26ca9bab0f6d1cbf7accabeb (from https://pypi.org/simple/varcode/), version: 0.8.0 Using version 0.8.0 (newest of versions: 0.8.0) Created temporary directory: /tmp/pip-unpack-63dqz6di Downloading https://files.pythonhosted.org/packages/b4/e5/ceda01efe4290d97b00861f9811ed1998d0e3104a0dfb77ad301cecd9ce8/varcode-0.8.0.tar.gz (75kB) Downloading from URL https://files.pythonhosted.org/packages/b4/e5/ceda01efe4290d97b00861f9811ed1998d0e3104a0dfb77ad301cecd9ce8/varcode-0.8.0.tar.gz#sha256=31cd0178cb43a6f288b72309891471e02d73535a26ca9bab0f6d1cbf7accabeb (from https://pypi.org/simple/varcode/) Added varcode==0.8.0 from https://files.pythonhosted.org/packages/b4/e5/ceda01efe4290d97b00861f9811ed1998d0e3104a0dfb77ad301cecd9ce8/varcode-0.8.0.tar.gz#sha256=31cd0178cb43a6f288b72309891471e02d73535a26ca9bab0f6d1cbf7accabeb to build tracker '/tmp/pip-req-tracker-srjjs7jt' Running setup.py (path:/tmp/pip-wheel-7ilo_nap/varcode/setup.py) egg_info for package varcode Running command python setup.py egg_info No pandoc was found: either install pandoc and add it to your PATH or or call pypandoc.download_pandoc(...) or install pypandoc wheels with included pandoc. Failed to convert README.md from Markdown to reStructuredText Version: 0.8.0 running egg_info creating pip-egg-info/varcode.egg-info writing top-level names to pip-egg-info/varcode.egg-info/top_level.txt writing entry points to pip-egg-info/varcode.egg-info/entry_points.txt writing pip-egg-info/varcode.egg-info/PKG-INFO writing requirements to pip-egg-info/varcode.egg-info/requires.txt writing dependency_links to pip-egg-info/varcode.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/varcode.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/varcode.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- warning: no files found matching 'versioneer.py' warning: no files found matching 'varcode/_version.py' writing manifest file 'pip-egg-info/varcode.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-7ilo_nap/varcode has version 0.8.0, which satisfies requirement varcode==0.8.0 from https://files.pythonhosted.org/packages/b4/e5/ceda01efe4290d97b00861f9811ed1998d0e3104a0dfb77ad301cecd9ce8/varcode-0.8.0.tar.gz#sha256=31cd0178cb43a6f288b72309891471e02d73535a26ca9bab0f6d1cbf7accabeb Removed varcode==0.8.0 from https://files.pythonhosted.org/packages/b4/e5/ceda01efe4290d97b00861f9811ed1998d0e3104a0dfb77ad301cecd9ce8/varcode-0.8.0.tar.gz#sha256=31cd0178cb43a6f288b72309891471e02d73535a26ca9bab0f6d1cbf7accabeb from build tracker '/tmp/pip-req-tracker-srjjs7jt' Building wheels for collected packages: varcode Created temporary directory: /tmp/pip-wheel-xgknsf4p Running setup.py bdist_wheel for varcode: started Destination directory: /tmp/pip-wheel-xgknsf4p Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-7ilo_nap/varcode/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-xgknsf4p Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- No pandoc was found: either install pandoc and add it to your PATH or or call pypandoc.download_pandoc(...) or install pypandoc wheels with included pandoc. Failed to convert README.md from Markdown to reStructuredText Version: 0.8.0 running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/varcode copying varcode/util.py -> build/lib/varcode copying varcode/variant_collection.py -> build/lib/varcode copying varcode/vcf_output.py -> build/lib/varcode copying varcode/__init__.py -> build/lib/varcode copying varcode/string_helpers.py -> build/lib/varcode copying varcode/reference.py -> build/lib/varcode copying varcode/maf.py -> build/lib/varcode copying varcode/nucleotides.py -> build/lib/varcode copying varcode/vcf.py -> build/lib/varcode copying varcode/variant.py -> build/lib/varcode copying varcode/common.py -> build/lib/varcode creating build/lib/test copying test/test_cosmic_mutations.py -> build/lib/test copying test/test_string_helpers.py -> build/lib/test copying test/test_mutate.py -> build/lib/test copying test/test_dbnsfp_validation.py -> build/lib/test copying test/test_effect_classes.py -> build/lib/test copying test/test_vcf.py -> build/lib/test copying test/test_variant_collection.py -> build/lib/test copying test/benchmark_vcf_load.py -> build/lib/test copying test/__init__.py -> build/lib/test copying test/test_common.py -> build/lib/test copying test/test_vcf_output.py -> build/lib/test copying test/test_variant.py -> build/lib/test copying test/test_exonic_splice_site.py -> build/lib/test copying test/test_no_duplicate_variants.py -> build/lib/test copying test/test_frameshift_helpers.py -> build/lib/test copying test/test_effect_collection_serialization.py -> build/lib/test copying test/test_timings.py -> build/lib/test copying test/test_effects_from_mutagenix_variants.py -> build/lib/test copying test/test_maf.py -> build/lib/test copying test/test_effect_collection.py -> build/lib/test copying test/test_mouse.py -> build/lib/test copying test/test_collection_filtering.py -> build/lib/test copying test/test_problematic_variants.py -> build/lib/test copying test/data.py -> build/lib/test copying test/common.py -> build/lib/test copying test/test_reference.py -> build/lib/test copying test/test_cli.py -> build/lib/test copying test/test_mm10_klf6_frameshift.py -> build/lib/test copying test/test_effect_annotation_errors.py -> build/lib/test creating build/lib/varcode/cli copying varcode/cli/__init__.py -> build/lib/varcode/cli copying varcode/cli/version_info.py -> build/lib/varcode/cli copying varcode/cli/variants_script.py -> build/lib/varcode/cli copying varcode/cli/variant_args.py -> build/lib/varcode/cli creating build/lib/varcode/effects copying varcode/effects/translate.py -> build/lib/varcode/effects copying varcode/effects/effect_classes.py -> build/lib/varcode/effects copying varcode/effects/__init__.py -> build/lib/varcode/effects copying varcode/effects/mutate.py -> build/lib/varcode/effects copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects copying varcode/effects/effect_collection.py -> build/lib/varcode/effects copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects copying varcode/effects/common.py -> build/lib/varcode/effects copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects copying varcode/cli/logging.conf -> build/lib/varcode/cli installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/varcode creating build/bdist.linux-armv7l/wheel/varcode/cli copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/varcode/cli copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/varcode/cli copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/varcode/cli copying build/lib/varcode/cli/variants_script.py -> build/bdist.linux-armv7l/wheel/varcode/cli copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/varcode/cli copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/varcode creating build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/varcode/effects copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/varcode copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/varcode creating build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_cosmic_mutations.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_string_helpers.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mutate.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_dbnsfp_validation.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effect_classes.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_vcf.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_variant_collection.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/benchmark_vcf_load.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/__init__.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_common.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_vcf_output.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_variant.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_exonic_splice_site.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_no_duplicate_variants.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_frameshift_helpers.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effect_collection_serialization.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_timings.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effects_from_mutagenix_variants.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_maf.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effect_collection.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mouse.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_collection_filtering.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_problematic_variants.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/data.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/common.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_reference.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_cli.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_mm10_klf6_frameshift.py -> build/bdist.linux-armv7l/wheel/test copying build/lib/test/test_effect_annotation_errors.py -> build/bdist.linux-armv7l/wheel/test running install_egg_info running egg_info writing dependency_links to varcode.egg-info/dependency_links.txt writing entry points to varcode.egg-info/entry_points.txt writing varcode.egg-info/PKG-INFO writing top-level names to varcode.egg-info/top_level.txt writing requirements to varcode.egg-info/requires.txt reading manifest file 'varcode.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'versioneer.py' warning: no files found matching 'varcode/_version.py' writing manifest file 'varcode.egg-info/SOURCES.txt' Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/varcode-0.8.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/varcode-0.8.0.dist-info/WHEEL creating '/tmp/pip-wheel-xgknsf4p/varcode-0.8.0-py3-none-any.whl' and adding '.' to it adding 'test/__init__.py' adding 'test/benchmark_vcf_load.py' adding 'test/common.py' adding 'test/data.py' adding 'test/test_cli.py' adding 'test/test_collection_filtering.py' adding 'test/test_common.py' adding 'test/test_cosmic_mutations.py' adding 'test/test_dbnsfp_validation.py' adding 'test/test_effect_annotation_errors.py' adding 'test/test_effect_classes.py' adding 'test/test_effect_collection.py' adding 'test/test_effect_collection_serialization.py' adding 'test/test_effects_from_mutagenix_variants.py' adding 'test/test_exonic_splice_site.py' adding 'test/test_frameshift_helpers.py' adding 'test/test_maf.py' adding 'test/test_mm10_klf6_frameshift.py' adding 'test/test_mouse.py' adding 'test/test_mutate.py' adding 'test/test_no_duplicate_variants.py' adding 'test/test_problematic_variants.py' adding 'test/test_reference.py' adding 'test/test_string_helpers.py' adding 'test/test_timings.py' adding 'test/test_variant.py' adding 'test/test_variant_collection.py' adding 'test/test_vcf.py' adding 'test/test_vcf_output.py' adding 'varcode/__init__.py' adding 'varcode/common.py' adding 'varcode/maf.py' adding 'varcode/nucleotides.py' adding 'varcode/reference.py' adding 'varcode/string_helpers.py' adding 'varcode/util.py' adding 'varcode/variant.py' adding 'varcode/variant_collection.py' adding 'varcode/vcf.py' adding 'varcode/vcf_output.py' adding 'varcode/cli/__init__.py' adding 'varcode/cli/logging.conf' adding 'varcode/cli/variant_args.py' adding 'varcode/cli/variants_script.py' adding 'varcode/cli/version_info.py' adding 'varcode/effects/__init__.py' adding 'varcode/effects/common.py' adding 'varcode/effects/effect_classes.py' adding 'varcode/effects/effect_collection.py' adding 'varcode/effects/effect_helpers.py' adding 'varcode/effects/effect_ordering.py' adding 'varcode/effects/effect_prediction.py' adding 'varcode/effects/effect_prediction_coding.py' adding 'varcode/effects/effect_prediction_coding_frameshift.py' adding 'varcode/effects/effect_prediction_coding_in_frame.py' adding 'varcode/effects/mutate.py' adding 'varcode/effects/transcript_helpers.py' adding 'varcode/effects/translate.py' adding 'varcode-0.8.0.dist-info/entry_points.txt' adding 'varcode-0.8.0.dist-info/top_level.txt' adding 'varcode-0.8.0.dist-info/WHEEL' adding 'varcode-0.8.0.dist-info/METADATA' adding 'varcode-0.8.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for varcode: finished with status 'done' Stored in directory: /tmp/tmpphs453_8 Successfully built varcode Cleaning up... Removing source in /tmp/pip-wheel-7ilo_nap/varcode Removed build tracker '/tmp/pip-req-tracker-srjjs7jt'