Created temporary directory: /tmp/pip-ephem-wheel-cache-7p0wl1rm Created temporary directory: /tmp/pip-req-tracker-hjkwjpdk Created requirements tracker '/tmp/pip-req-tracker-hjkwjpdk' Created temporary directory: /tmp/pip-wheel-2pgvp16v Looking in indexes: https://pypi.python.org/simple Collecting pubrunner==0.5.0 1 location(s) to search for versions of pubrunner: * https://pypi.python.org/simple/pubrunner/ Getting page https://pypi.python.org/simple/pubrunner/ Analyzing links from page https://pypi.org/simple/pubrunner/ Found link https://files.pythonhosted.org/packages/6c/6a/f4513b14bf4b854168da41463202748b7b83e30620bcbf9b7383b296ab6f/pubrunner-0.1.0.tar.gz#sha256=be2491692e40e08ce626952036cdb86ae8203feb731dd5edc7bc8bca8bd0f40e (from https://pypi.org/simple/pubrunner/), version: 0.1.0 Found link https://files.pythonhosted.org/packages/2e/2e/c0afbe541e12079600714dda307e94e588aec4922b090dfc6291165279e7/pubrunner-0.1.1.tar.gz#sha256=376b64a184629c36913e327df57c907643edd74d8674b2a93a704afb818012d8 (from https://pypi.org/simple/pubrunner/), version: 0.1.1 Found link https://files.pythonhosted.org/packages/cf/f4/9f91597f3cb2696b925a00deccccf12264581673d0bb3e5227a4e71df0a6/pubrunner-0.1.2.tar.gz#sha256=62f31647a9f2ab1159873ed3d8599ef18155f56cd3528af77f6ced4f98071860 (from https://pypi.org/simple/pubrunner/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/5a/fd/22d3d1c74696d65a22840664bf801293c88d4c90a333e644924166808fe3/pubrunner-0.1.3.tar.gz#sha256=14571a822b12f518da29fe5ebb3cd5944be1725011bbb8f8ca34cacb28ca2a64 (from https://pypi.org/simple/pubrunner/), version: 0.1.3 Found link https://files.pythonhosted.org/packages/91/35/a1241e6b019f5e0f2f6d45ca07b625abe6eb5b30d6e896360fae9f2d7a2e/pubrunner-0.1.4.tar.gz#sha256=7e395d8c49c5045bc4d117ad022e38c97861d3de796e0d0318d90c753895ac13 (from https://pypi.org/simple/pubrunner/), version: 0.1.4 Found link https://files.pythonhosted.org/packages/d1/b1/46b464a545a276af16dc8a47a166fbe735206d7f462886355a81c18ef514/pubrunner-0.2.0.tar.gz#sha256=f7f81b4ad16d9a552c22c1d31e55c02c60392f535b3e16450ea8c2aa8e258f77 (from https://pypi.org/simple/pubrunner/), version: 0.2.0 Found link https://files.pythonhosted.org/packages/29/47/732d656446cd15808d0da8449d38c2934567c1042a269c90ca4e8b104a57/pubrunner-0.2.1.tar.gz#sha256=b5cb2f084133ca05786c5af71ac535dc4a6ce7b0b1119fb5fe2ee402c9372aef (from https://pypi.org/simple/pubrunner/), version: 0.2.1 Found link https://files.pythonhosted.org/packages/cb/76/0c5a020ce4a75d492169b84f556b9fa8fe2bbcca2cef06e30bb0e0e4c77b/pubrunner-0.2.2.tar.gz#sha256=0dfa2d818cc18c8a7462806314aef7f827e1e69be7e7c20bbdb843da2b52d79d (from https://pypi.org/simple/pubrunner/), version: 0.2.2 Found link https://files.pythonhosted.org/packages/e1/cc/d0724faf35d387b9d0dfc5abe82364b41a427e39a277c87e0fc35d24b559/pubrunner-0.2.3.tar.gz#sha256=62d04ab630e7176f009c97361b8961d19268d6c2828657b449481b2e917abe44 (from https://pypi.org/simple/pubrunner/), version: 0.2.3 Found link https://files.pythonhosted.org/packages/95/ce/0bf8f0c2567dbbe983d3d391e329b83dd01ff9c457840716ded424cdbf2c/pubrunner-0.2.4.tar.gz#sha256=26c58d1445e4f17694e94c360b0a28856a32731bb7657e4e14ef61c51b677783 (from https://pypi.org/simple/pubrunner/), version: 0.2.4 Found link https://files.pythonhosted.org/packages/96/43/545b6671f97ab059a24619f7702efdab0eb886ca7e4601ca0aeffedc1584/pubrunner-0.3.0.tar.gz#sha256=1b4d015dfd47ae4e1c0cfe630fafbfcfd698d5eaaa01c7ad3dbea975a316df79 (from https://pypi.org/simple/pubrunner/), version: 0.3.0 Found link https://files.pythonhosted.org/packages/3c/8f/dc2020fa728d151dc1e1e4bd792d6c3b76967a4ed6c72d177cb7594e0a90/pubrunner-0.3.1.tar.gz#sha256=5e043f51ede4f732a2a6b5516faefbf12631e5c6fdff5b776794c0581efc1055 (from https://pypi.org/simple/pubrunner/), version: 0.3.1 Found link https://files.pythonhosted.org/packages/cd/c3/4d78d3bd5bfbed4b8fb655e21abf49f5f5abfe58f4bb5cebd2cef5852236/pubrunner-0.4.0.tar.gz#sha256=ca1753ac3431f5422b376d2440208e8152e01e9300b8ccd355c64d82754781f5 (from https://pypi.org/simple/pubrunner/), version: 0.4.0 Found link https://files.pythonhosted.org/packages/c4/fc/92d4622d775dfc3403c8a0bbb71bc81dea207c1bf44584400190bf55fe27/pubrunner-0.4.1.tar.gz#sha256=c7cc560bfaf4c8688ef14692ff9cb53c65eb7e20c70cf5dd7213516a43c4b8e0 (from https://pypi.org/simple/pubrunner/), version: 0.4.1 Found link https://files.pythonhosted.org/packages/18/5a/2673256b80c7090c86de8ce53f9a171223cf99c021bd424f09b8cf566393/pubrunner-0.5.0.tar.gz#sha256=3d3cfd5fbb4d5c48bb7770c10a0b19ec066d6cc888ade969e1b29872aea79bfc (from https://pypi.org/simple/pubrunner/), version: 0.5.0 Using version 0.5.0 (newest of versions: 0.5.0) Created temporary directory: /tmp/pip-unpack-7m_mi9zr Downloading https://files.pythonhosted.org/packages/18/5a/2673256b80c7090c86de8ce53f9a171223cf99c021bd424f09b8cf566393/pubrunner-0.5.0.tar.gz Downloading from URL https://files.pythonhosted.org/packages/18/5a/2673256b80c7090c86de8ce53f9a171223cf99c021bd424f09b8cf566393/pubrunner-0.5.0.tar.gz#sha256=3d3cfd5fbb4d5c48bb7770c10a0b19ec066d6cc888ade969e1b29872aea79bfc (from https://pypi.org/simple/pubrunner/) Added pubrunner==0.5.0 from https://files.pythonhosted.org/packages/18/5a/2673256b80c7090c86de8ce53f9a171223cf99c021bd424f09b8cf566393/pubrunner-0.5.0.tar.gz#sha256=3d3cfd5fbb4d5c48bb7770c10a0b19ec066d6cc888ade969e1b29872aea79bfc to build tracker '/tmp/pip-req-tracker-hjkwjpdk' Running setup.py (path:/tmp/pip-wheel-2pgvp16v/pubrunner/setup.py) egg_info for package pubrunner Running command python setup.py egg_info running egg_info creating pip-egg-info/pubrunner.egg-info writing requirements to pip-egg-info/pubrunner.egg-info/requires.txt writing top-level names to pip-egg-info/pubrunner.egg-info/top_level.txt writing pip-egg-info/pubrunner.egg-info/PKG-INFO writing dependency_links to pip-egg-info/pubrunner.egg-info/dependency_links.txt writing entry points to pip-egg-info/pubrunner.egg-info/entry_points.txt writing manifest file 'pip-egg-info/pubrunner.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/pubrunner.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/pubrunner.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-2pgvp16v/pubrunner has version 0.5.0, which satisfies requirement pubrunner==0.5.0 from https://files.pythonhosted.org/packages/18/5a/2673256b80c7090c86de8ce53f9a171223cf99c021bd424f09b8cf566393/pubrunner-0.5.0.tar.gz#sha256=3d3cfd5fbb4d5c48bb7770c10a0b19ec066d6cc888ade969e1b29872aea79bfc Removed pubrunner==0.5.0 from https://files.pythonhosted.org/packages/18/5a/2673256b80c7090c86de8ce53f9a171223cf99c021bd424f09b8cf566393/pubrunner-0.5.0.tar.gz#sha256=3d3cfd5fbb4d5c48bb7770c10a0b19ec066d6cc888ade969e1b29872aea79bfc from build tracker '/tmp/pip-req-tracker-hjkwjpdk' Building wheels for collected packages: pubrunner Created temporary directory: /tmp/pip-wheel-wjpne3kn Running setup.py bdist_wheel for pubrunner: started Destination directory: /tmp/pip-wheel-wjpne3kn Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-2pgvp16v/pubrunner/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-wjpne3kn running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pubrunner copying pubrunner/convert.py -> build/lib/pubrunner copying pubrunner/globalsettings.py -> build/lib/pubrunner copying pubrunner/command_line.py -> build/lib/pubrunner copying pubrunner/getresource.py -> build/lib/pubrunner copying pubrunner/upload.py -> build/lib/pubrunner copying pubrunner/gather_pmids.py -> build/lib/pubrunner copying pubrunner/__init__.py -> build/lib/pubrunner copying pubrunner/pubmed_hash.py -> build/lib/pubrunner copying pubrunner/convertBioCToTSV.py -> build/lib/pubrunner copying pubrunner/pubrun.py -> build/lib/pubrunner copying pubrunner/snakemake.py -> build/lib/pubrunner running egg_info writing requirements to pubrunner.egg-info/requires.txt writing dependency_links to pubrunner.egg-info/dependency_links.txt writing top-level names to pubrunner.egg-info/top_level.txt writing pubrunner.egg-info/PKG-INFO writing entry points to pubrunner.egg-info/entry_points.txt reading manifest file 'pubrunner.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pubrunner.egg-info/SOURCES.txt' copying pubrunner/pubrunner.settings.default.yml -> build/lib/pubrunner creating build/lib/pubrunner/Snakefiles copying pubrunner/Snakefiles/Convert.py -> build/lib/pubrunner/Snakefiles copying pubrunner/Snakefiles/PubmedHashes.py -> build/lib/pubrunner/Snakefiles copying pubrunner/Snakefiles/Run.py -> build/lib/pubrunner/Snakefiles creating build/lib/pubrunner/resources copying pubrunner/resources/DISEASE_ONTOLOGY.yml -> build/lib/pubrunner/resources copying pubrunner/resources/FOODON.yml -> build/lib/pubrunner/resources copying pubrunner/resources/METATHESAURUS_EMPTY.yml -> build/lib/pubrunner/resources copying pubrunner/resources/NCBI_GENE.yml -> build/lib/pubrunner/resources copying pubrunner/resources/NCBI_GENE_TEST.yml -> build/lib/pubrunner/resources copying pubrunner/resources/PMCAMC.yml -> build/lib/pubrunner/resources copying pubrunner/resources/PMCOA.yml -> build/lib/pubrunner/resources copying pubrunner/resources/PMCOA_TWOJOURNALS.yml -> build/lib/pubrunner/resources copying pubrunner/resources/PUBCHEM.yml -> build/lib/pubrunner/resources copying pubrunner/resources/PUBMED.yml -> build/lib/pubrunner/resources copying pubrunner/resources/PUBMED_TWOFILES.yml -> build/lib/pubrunner/resources installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/pubrunner.settings.default.yml -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/convert.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/globalsettings.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/command_line.py -> build/bdist.linux-armv7l/wheel/pubrunner creating build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/PMCOA.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/DISEASE_ONTOLOGY.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/NCBI_GENE.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/METATHESAURUS_EMPTY.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/FOODON.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/PUBMED.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/PMCOA_TWOJOURNALS.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/PUBCHEM.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/PUBMED_TWOFILES.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/PMCAMC.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/resources/NCBI_GENE_TEST.yml -> build/bdist.linux-armv7l/wheel/pubrunner/resources copying build/lib/pubrunner/getresource.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/upload.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/gather_pmids.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/__init__.py -> build/bdist.linux-armv7l/wheel/pubrunner creating build/bdist.linux-armv7l/wheel/pubrunner/Snakefiles copying build/lib/pubrunner/Snakefiles/Convert.py -> build/bdist.linux-armv7l/wheel/pubrunner/Snakefiles copying build/lib/pubrunner/Snakefiles/PubmedHashes.py -> build/bdist.linux-armv7l/wheel/pubrunner/Snakefiles copying build/lib/pubrunner/Snakefiles/Run.py -> build/bdist.linux-armv7l/wheel/pubrunner/Snakefiles copying build/lib/pubrunner/pubmed_hash.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/convertBioCToTSV.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/pubrun.py -> build/bdist.linux-armv7l/wheel/pubrunner copying build/lib/pubrunner/snakemake.py -> build/bdist.linux-armv7l/wheel/pubrunner running install_egg_info Copying pubrunner.egg-info to build/bdist.linux-armv7l/wheel/pubrunner-0.5.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/pubrunner-0.5.0.dist-info/WHEEL creating '/tmp/pip-wheel-wjpne3kn/pubrunner-0.5.0-py3-none-any.whl' and adding '.' to it adding 'pubrunner/__init__.py' adding 'pubrunner/command_line.py' adding 'pubrunner/convert.py' adding 'pubrunner/convertBioCToTSV.py' adding 'pubrunner/gather_pmids.py' adding 'pubrunner/getresource.py' adding 'pubrunner/globalsettings.py' adding 'pubrunner/pubmed_hash.py' adding 'pubrunner/pubrun.py' adding 'pubrunner/pubrunner.settings.default.yml' adding 'pubrunner/snakemake.py' adding 'pubrunner/upload.py' adding 'pubrunner/Snakefiles/Convert.py' adding 'pubrunner/Snakefiles/PubmedHashes.py' adding 'pubrunner/Snakefiles/Run.py' adding 'pubrunner/resources/DISEASE_ONTOLOGY.yml' adding 'pubrunner/resources/FOODON.yml' adding 'pubrunner/resources/METATHESAURUS_EMPTY.yml' adding 'pubrunner/resources/NCBI_GENE.yml' adding 'pubrunner/resources/NCBI_GENE_TEST.yml' adding 'pubrunner/resources/PMCAMC.yml' adding 'pubrunner/resources/PMCOA.yml' adding 'pubrunner/resources/PMCOA_TWOJOURNALS.yml' adding 'pubrunner/resources/PUBCHEM.yml' adding 'pubrunner/resources/PUBMED.yml' adding 'pubrunner/resources/PUBMED_TWOFILES.yml' adding 'pubrunner-0.5.0.dist-info/entry_points.txt' adding 'pubrunner-0.5.0.dist-info/top_level.txt' adding 'pubrunner-0.5.0.dist-info/WHEEL' adding 'pubrunner-0.5.0.dist-info/METADATA' adding 'pubrunner-0.5.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for pubrunner: finished with status 'done' Stored in directory: /tmp/tmp771xgrqc Successfully built pubrunner Cleaning up... Removing source in /tmp/pip-wheel-2pgvp16v/pubrunner Removed build tracker '/tmp/pip-req-tracker-hjkwjpdk'