Created temporary directory: /tmp/pip-ephem-wheel-cache-78exwtok Created temporary directory: /tmp/pip-req-tracker-in0n863l Created requirements tracker '/tmp/pip-req-tracker-in0n863l' Created temporary directory: /tmp/pip-wheel-jx_pw76r Collecting cgatshowcase==0.1.7 1 location(s) to search for versions of cgatshowcase: * https://pypi.org/simple/cgatshowcase/ Getting page https://pypi.org/simple/cgatshowcase/ Analyzing links from page https://pypi.org/simple/cgatshowcase/ Found link https://files.pythonhosted.org/packages/93/09/8684c57eb4ac5421ffa30c29cd99705d647c785f858c03b85131afa180ee/cgatshowcase-0.1.2-py3-none-any.whl#sha256=68e1ef2bf49a096c779677f8baa849c368361c1cc885b7672673aeabfed6fef1 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/45/5a/508546f30141191e13ece77418f76ef1c1fdf21f3454aecf3b68aa63c122/cgatshowcase-0.1.2.tar.gz#sha256=6dc03c1447e3fecfd93fbb5f8c1ce7eb153a2995e4090a1229dc265510fbee22 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/24/d2/9f2d28698677b0e49b465063395808f1781e2d456843d6930509ec3bf44d/cgatshowcase-0.1.3.tar.gz#sha256=ffa47a4489853e57b6d3f8d6284ecded39bb771857518b9d68cc53c4349e08a4 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.3 Found link https://files.pythonhosted.org/packages/ef/70/b8516b0ae6fcd9b7194aae51434f342d069b5f72c812063f9f45745f5a43/cgatshowcase-0.1.4.tar.gz#sha256=e01e437529e21b254ce479521bf22374993628ed255b54e5b42ea5ad4a9cba63 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.4 Found link https://files.pythonhosted.org/packages/49/8e/a78ed9239e4de0f96ca4a1c38255f826d703d819815d7ec8b81fe4c71eb3/cgatshowcase-0.1.5.tar.gz#sha256=4e24ba2bfb57af4c2b1494cd9826701a67a9400518ef546783d0d89d34dd9124 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.5 Found link https://files.pythonhosted.org/packages/55/bb/c3b4e8afe1916c7a3eecd973c6f4b17792fc6b13822852cbc9bf5fd20772/cgatshowcase-0.1.6.tar.gz#sha256=288149d89f826988e45d72077b188bf9fdff689fcf8ac69433427566af2b167b (from https://pypi.org/simple/cgatshowcase/), version: 0.1.6 Found link https://files.pythonhosted.org/packages/eb/ea/084acf7b3a75cdc0a885b1031d6a96c31ab63ba6aca7bf4b977050394544/cgatshowcase-0.1.7.tar.gz#sha256=11467bc84a0fe70558e15d43505b75d6c07abf5ad74a28d252a99ecefe7e85bb (from https://pypi.org/simple/cgatshowcase/), version: 0.1.7 Found link https://files.pythonhosted.org/packages/59/e2/64dc7de28a7b0e2b6077baf28e0327305f1c7246363abfbc266a761317f4/cgatshowcase-0.1.8.tar.gz#sha256=59e6e09ae9004dbd40b358994204830536c2aef8cdef5fa4e5686077a1428365 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.8 Found link https://files.pythonhosted.org/packages/b0/c1/e3f71448e53801346a1081f0993f9752f99262373d62cc8f5b5bd25d6e9c/cgatshowcase-0.1.8.1.tar.gz#sha256=20341edeef0794a4c4f57887b3c63088d33af5c18da7f9f69515f28c057bc95e (from https://pypi.org/simple/cgatshowcase/), version: 0.1.8.1 Found link https://files.pythonhosted.org/packages/48/cb/dcfbfd4092065c9ffcf3fb828210713d5eb558ddb87835950608ea99ea20/cgatshowcase-0.1.8.2.tar.gz#sha256=6df9601427d24d2fa7a669134dd4346107826c65c76d824f1fa78651adbaf2f3 (from https://pypi.org/simple/cgatshowcase/), version: 0.1.8.2 Using version 0.1.7 (newest of versions: 0.1.7) Created temporary directory: /tmp/pip-unpack-zj8r4ru5 Downloading https://files.pythonhosted.org/packages/eb/ea/084acf7b3a75cdc0a885b1031d6a96c31ab63ba6aca7bf4b977050394544/cgatshowcase-0.1.7.tar.gz Downloading from URL https://files.pythonhosted.org/packages/eb/ea/084acf7b3a75cdc0a885b1031d6a96c31ab63ba6aca7bf4b977050394544/cgatshowcase-0.1.7.tar.gz#sha256=11467bc84a0fe70558e15d43505b75d6c07abf5ad74a28d252a99ecefe7e85bb (from https://pypi.org/simple/cgatshowcase/) Added cgatshowcase==0.1.7 from https://files.pythonhosted.org/packages/eb/ea/084acf7b3a75cdc0a885b1031d6a96c31ab63ba6aca7bf4b977050394544/cgatshowcase-0.1.7.tar.gz#sha256=11467bc84a0fe70558e15d43505b75d6c07abf5ad74a28d252a99ecefe7e85bb to build tracker '/tmp/pip-req-tracker-in0n863l' Running setup.py (path:/tmp/pip-wheel-jx_pw76r/cgatshowcase/setup.py) egg_info for package cgatshowcase Running command python setup.py egg_info running egg_info creating pip-egg-info/cgatshowcase.egg-info writing dependency_links to pip-egg-info/cgatshowcase.egg-info/dependency_links.txt writing top-level names to pip-egg-info/cgatshowcase.egg-info/top_level.txt writing entry points to pip-egg-info/cgatshowcase.egg-info/entry_points.txt writing pip-egg-info/cgatshowcase.egg-info/PKG-INFO writing manifest file 'pip-egg-info/cgatshowcase.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/cgatshowcase.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'INSTALL' warning: no files found matching 'README.rst' warning: no previously-included files found matching '*~' writing manifest file 'pip-egg-info/cgatshowcase.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-jx_pw76r/cgatshowcase has version 0.1.7, which satisfies requirement cgatshowcase==0.1.7 from https://files.pythonhosted.org/packages/eb/ea/084acf7b3a75cdc0a885b1031d6a96c31ab63ba6aca7bf4b977050394544/cgatshowcase-0.1.7.tar.gz#sha256=11467bc84a0fe70558e15d43505b75d6c07abf5ad74a28d252a99ecefe7e85bb Removed cgatshowcase==0.1.7 from https://files.pythonhosted.org/packages/eb/ea/084acf7b3a75cdc0a885b1031d6a96c31ab63ba6aca7bf4b977050394544/cgatshowcase-0.1.7.tar.gz#sha256=11467bc84a0fe70558e15d43505b75d6c07abf5ad74a28d252a99ecefe7e85bb from build tracker '/tmp/pip-req-tracker-in0n863l' Building wheels for collected packages: cgatshowcase Created temporary directory: /tmp/pip-wheel-0mkwmtuw Running setup.py bdist_wheel for cgatshowcase: started Destination directory: /tmp/pip-wheel-0mkwmtuw Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-jx_pw76r/cgatshowcase/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-0mkwmtuw running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/cgatshowcase copying cgatshowcase/ModuleTransdiffexprs.py -> build/lib/cgatshowcase copying cgatshowcase/version.py -> build/lib/cgatshowcase copying cgatshowcase/pipeline_transdiffexprs.py -> build/lib/cgatshowcase copying cgatshowcase/entry.py -> build/lib/cgatshowcase copying cgatshowcase/__init__.py -> build/lib/cgatshowcase running egg_info writing cgatshowcase.egg-info/PKG-INFO writing top-level names to cgatshowcase.egg-info/top_level.txt writing entry points to cgatshowcase.egg-info/entry_points.txt writing dependency_links to cgatshowcase.egg-info/dependency_links.txt reading manifest file 'cgatshowcase.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'INSTALL' warning: no files found matching 'README.rst' warning: no previously-included files found matching '*~' writing manifest file 'cgatshowcase.egg-info/SOURCES.txt' creating build/lib/cgatshowcase/R copying cgatshowcase/R/DESeq2_lrt.R -> build/lib/cgatshowcase/R copying cgatshowcase/R/DESeq2_wald.R -> build/lib/cgatshowcase/R copying cgatshowcase/R/counts2tpm.R -> build/lib/cgatshowcase/R creating build/lib/cgatshowcase/pipeline_docs creating build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs creating build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/Clustering.Rmd -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/DE.Rmd -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/Enrichment.Rmd -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/R_report.Rproj -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/_site.yml -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/functions.R -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/index.Rmd -> build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir creating build/lib/cgatshowcase/pipeline_transdiffexprs copying cgatshowcase/pipeline_transdiffexprs/design_example.tsv -> build/lib/cgatshowcase/pipeline_transdiffexprs copying cgatshowcase/pipeline_transdiffexprs/pipeline.yml -> build/lib/cgatshowcase/pipeline_transdiffexprs installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/cgatshowcase creating build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs creating build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs creating build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/index.Rmd -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/R_report.Rproj -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/Clustering.Rmd -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/functions.R -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/_site.yml -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/Enrichment.Rmd -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/DE.Rmd -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir copying build/lib/cgatshowcase/ModuleTransdiffexprs.py -> build/bdist.linux-armv7l/wheel/cgatshowcase copying build/lib/cgatshowcase/version.py -> build/bdist.linux-armv7l/wheel/cgatshowcase copying build/lib/cgatshowcase/pipeline_transdiffexprs.py -> build/bdist.linux-armv7l/wheel/cgatshowcase copying build/lib/cgatshowcase/entry.py -> build/bdist.linux-armv7l/wheel/cgatshowcase copying build/lib/cgatshowcase/__init__.py -> build/bdist.linux-armv7l/wheel/cgatshowcase creating build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_transdiffexprs copying build/lib/cgatshowcase/pipeline_transdiffexprs/pipeline.yml -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_transdiffexprs copying build/lib/cgatshowcase/pipeline_transdiffexprs/design_example.tsv -> build/bdist.linux-armv7l/wheel/cgatshowcase/pipeline_transdiffexprs creating build/bdist.linux-armv7l/wheel/cgatshowcase/R copying build/lib/cgatshowcase/R/DESeq2_wald.R -> build/bdist.linux-armv7l/wheel/cgatshowcase/R copying build/lib/cgatshowcase/R/counts2tpm.R -> build/bdist.linux-armv7l/wheel/cgatshowcase/R copying build/lib/cgatshowcase/R/DESeq2_lrt.R -> build/bdist.linux-armv7l/wheel/cgatshowcase/R running install_egg_info Copying cgatshowcase.egg-info to build/bdist.linux-armv7l/wheel/cgatshowcase-0.1.7-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/cgatshowcase-0.1.7.dist-info/WHEEL creating '/tmp/pip-wheel-0mkwmtuw/cgatshowcase-0.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'cgatshowcase/ModuleTransdiffexprs.py' adding 'cgatshowcase/__init__.py' adding 'cgatshowcase/entry.py' adding 'cgatshowcase/pipeline_transdiffexprs.py' adding 'cgatshowcase/version.py' adding 'cgatshowcase/R/DESeq2_lrt.R' adding 'cgatshowcase/R/DESeq2_wald.R' adding 'cgatshowcase/R/counts2tpm.R' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/Clustering.Rmd' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/DE.Rmd' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/Enrichment.Rmd' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/R_report.Rproj' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/_site.yml' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/functions.R' adding 'cgatshowcase/pipeline_docs/pipeline_transdiffexprs/R_report.dir/index.Rmd' adding 'cgatshowcase/pipeline_transdiffexprs/design_example.tsv' adding 'cgatshowcase/pipeline_transdiffexprs/pipeline.yml' adding 'cgatshowcase-0.1.7.dist-info/METADATA' adding 'cgatshowcase-0.1.7.dist-info/WHEEL' adding 'cgatshowcase-0.1.7.dist-info/entry_points.txt' adding 'cgatshowcase-0.1.7.dist-info/top_level.txt' adding 'cgatshowcase-0.1.7.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for cgatshowcase: finished with status 'done' Stored in directory: /tmp/tmptgx1lqh4 Successfully built cgatshowcase Cleaning up... Removing source in /tmp/pip-wheel-jx_pw76r/cgatshowcase Removed build tracker '/tmp/pip-req-tracker-in0n863l'