Created temporary directory: /tmp/pip-ephem-wheel-cache-5se2z925 Created temporary directory: /tmp/pip-req-tracker-6mpyjaog Created requirements tracker '/tmp/pip-req-tracker-6mpyjaog' Created temporary directory: /tmp/pip-wheel-bj48zatj Collecting zippy-pipeline==2.1.3.0 1 location(s) to search for versions of zippy-pipeline: * https://pypi.org/simple/zippy-pipeline/ Getting page https://pypi.org/simple/zippy-pipeline/ Analyzing links from page https://pypi.org/simple/zippy-pipeline/ Found link https://files.pythonhosted.org/packages/43/0e/fc7dd8ecd21c0a8aae24e432f1de749fc8a73b86f49c061213394a1c1daa/zippy-pipeline-2.1.0.0.tar.gz#sha256=e618dfc573f0d27faddab2f31fa2eed52727cc35d470dfe128d1a96b1d71b8da (from https://pypi.org/simple/zippy-pipeline/), version: 2.1.0.0 Found link https://files.pythonhosted.org/packages/e0/c8/f4a1e225942da11c3ede00ddd1c19624a79cbd6cfc8e3fbd7cd7837cb966/zippy-pipeline-2.1.0.1.tar.gz#sha256=410069c8c667129dd28f855fb02fb581f547d7ea7bc0a9c1f9be8bc98b3edc54 (from https://pypi.org/simple/zippy-pipeline/), version: 2.1.0.1 Found link https://files.pythonhosted.org/packages/74/90/17f49f67a01b8aba97f50eadea2cc346a41d766c7d7df2a08dd29e32ea5d/zippy-pipeline-2.1.1.0.tar.gz#sha256=e04674b4258fb3f20f25611b2ea6553912848f19cf82a942923a4f9118545b13 (from https://pypi.org/simple/zippy-pipeline/), version: 2.1.1.0 Found link https://files.pythonhosted.org/packages/73/a2/45819098ff696c63e85c2c197233af23a38f30c3e696d37ea8ca6f6c8820/zippy-pipeline-2.1.3.0.tar.gz#sha256=ba39b9c5f22e0fc04019794cebd09628a55f8328bf11ae615ad8b7511669343e (from https://pypi.org/simple/zippy-pipeline/), version: 2.1.3.0 Skipping link https://files.pythonhosted.org/packages/4c/30/683a80161b9153ca1ae8ab90a5c65b164ce4528018fb342d43b34dcdcf30/zippy_pipeline-2.1.3.0-py2-none-any.whl#sha256=39ccbf755dc35ef6882c6bd6fd5bf09f8f50b2010190a293ad9822885c5e0296 (from https://pypi.org/simple/zippy-pipeline/); it is not compatible with this Python Using version 2.1.3.0 (newest of versions: 2.1.3.0) Created temporary directory: /tmp/pip-unpack-bhs0gs9x Downloading https://files.pythonhosted.org/packages/73/a2/45819098ff696c63e85c2c197233af23a38f30c3e696d37ea8ca6f6c8820/zippy-pipeline-2.1.3.0.tar.gz (88kB) Downloading from URL https://files.pythonhosted.org/packages/73/a2/45819098ff696c63e85c2c197233af23a38f30c3e696d37ea8ca6f6c8820/zippy-pipeline-2.1.3.0.tar.gz#sha256=ba39b9c5f22e0fc04019794cebd09628a55f8328bf11ae615ad8b7511669343e (from https://pypi.org/simple/zippy-pipeline/) Added zippy-pipeline==2.1.3.0 from https://files.pythonhosted.org/packages/73/a2/45819098ff696c63e85c2c197233af23a38f30c3e696d37ea8ca6f6c8820/zippy-pipeline-2.1.3.0.tar.gz#sha256=ba39b9c5f22e0fc04019794cebd09628a55f8328bf11ae615ad8b7511669343e to build tracker '/tmp/pip-req-tracker-6mpyjaog' Running setup.py (path:/tmp/pip-wheel-bj48zatj/zippy-pipeline/setup.py) egg_info for package zippy-pipeline Running command python setup.py egg_info running egg_info creating pip-egg-info/zippy_pipeline.egg-info writing requirements to pip-egg-info/zippy_pipeline.egg-info/requires.txt writing pip-egg-info/zippy_pipeline.egg-info/PKG-INFO writing dependency_links to pip-egg-info/zippy_pipeline.egg-info/dependency_links.txt writing top-level names to pip-egg-info/zippy_pipeline.egg-info/top_level.txt writing manifest file 'pip-egg-info/zippy_pipeline.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/zippy_pipeline.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/zippy_pipeline.egg-info/SOURCES.txt' /usr/local/lib/python3.4/dist-packages/setuptools/dist.py:470: UserWarning: Normalizing '2.1.3.0 ' to '2.1.3.0' normalized_version, Source in /tmp/pip-wheel-bj48zatj/zippy-pipeline has version 2.1.3.0, which satisfies requirement zippy-pipeline==2.1.3.0 from https://files.pythonhosted.org/packages/73/a2/45819098ff696c63e85c2c197233af23a38f30c3e696d37ea8ca6f6c8820/zippy-pipeline-2.1.3.0.tar.gz#sha256=ba39b9c5f22e0fc04019794cebd09628a55f8328bf11ae615ad8b7511669343e Removed zippy-pipeline==2.1.3.0 from https://files.pythonhosted.org/packages/73/a2/45819098ff696c63e85c2c197233af23a38f30c3e696d37ea8ca6f6c8820/zippy-pipeline-2.1.3.0.tar.gz#sha256=ba39b9c5f22e0fc04019794cebd09628a55f8328bf11ae615ad8b7511669343e from build tracker '/tmp/pip-req-tracker-6mpyjaog' Building wheels for collected packages: zippy-pipeline Created temporary directory: /tmp/pip-wheel-8r1c2v9a Running setup.py bdist_wheel for zippy-pipeline: started Destination directory: /tmp/pip-wheel-8r1c2v9a Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-bj48zatj/zippy-pipeline/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-8r1c2v9a /usr/local/lib/python3.4/dist-packages/setuptools/dist.py:470: UserWarning: Normalizing '2.1.3.0 ' to '2.1.3.0' normalized_version, running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/zippy copying zippy/bloom_kmer_finder.py -> build/lib/zippy copying zippy/star.py -> build/lib/zippy copying zippy/modular_runner.py -> build/lib/zippy copying zippy/run_edger.py -> build/lib/zippy copying zippy/rna_stats.py -> build/lib/zippy copying zippy/downsampling_bloom.py -> build/lib/zippy copying zippy/bwa.py -> build/lib/zippy copying zippy/utils.py -> build/lib/zippy copying zippy/samplesheet.py -> build/lib/zippy copying zippy/bcl2fastq.py -> build/lib/zippy copying zippy/primer_dimer_miner.py -> build/lib/zippy copying zippy/__init__.py -> build/lib/zippy copying zippy/make_params.py -> build/lib/zippy copying zippy/params.py -> build/lib/zippy copying zippy/zippy.py -> build/lib/zippy copying zippy/modular_helper.py -> build/lib/zippy running egg_info writing top-level names to zippy_pipeline.egg-info/top_level.txt writing dependency_links to zippy_pipeline.egg-info/dependency_links.txt writing requirements to zippy_pipeline.egg-info/requires.txt writing zippy_pipeline.egg-info/PKG-INFO reading manifest file 'zippy_pipeline.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'zippy_pipeline.egg-info/SOURCES.txt' copying zippy/__init__.pyc -> build/lib/zippy copying zippy/bcl2fastq.pyc -> build/lib/zippy copying zippy/build_all.spec -> build/lib/zippy copying zippy/bwa.pyc -> build/lib/zippy copying zippy/deseq.r -> build/lib/zippy copying zippy/edger.r -> build/lib/zippy copying zippy/make_params.pyc -> build/lib/zippy copying zippy/modular_helper.pyc -> build/lib/zippy copying zippy/modular_runner.pyc -> build/lib/zippy copying zippy/params.pyc -> build/lib/zippy copying zippy/samplesheet.pyc -> build/lib/zippy copying zippy/star.pyc -> build/lib/zippy copying zippy/utils.pyc -> build/lib/zippy copying zippy/zippy.pyc -> build/lib/zippy creating build/lib/zippy/__pycache__ copying zippy/__pycache__/__init__.cpython-34.pyc -> build/lib/zippy/__pycache__ creating build/lib/zippy/examples copying zippy/examples/chipseq.json -> build/lib/zippy/examples copying zippy/examples/docker.json -> build/lib/zippy/examples copying zippy/examples/rna.json -> build/lib/zippy/examples copying zippy/examples/subworkflow.json -> build/lib/zippy/examples copying zippy/examples/subworkflow_down.json -> build/lib/zippy/examples creating build/lib/zippy/test copying zippy/test/OtherRunner.py -> build/lib/zippy/test copying zippy/test/defaults.json -> build/lib/zippy/test copying zippy/test/defaults_ignore.json -> build/lib/zippy/test copying zippy/test/defaults_include.json -> build/lib/zippy/test copying zippy/test/defaults_test.proto -> build/lib/zippy/test copying zippy/test/defaults_warn.json -> build/lib/zippy/test copying zippy/test/dummy_params_test.json -> build/lib/zippy/test copying zippy/test/environment_params_test.json -> build/lib/zippy/test copying zippy/test/import_test.json -> build/lib/zippy/test copying zippy/test/import_test.proto -> build/lib/zippy/test copying zippy/test/merge_and_macs.json -> build/lib/zippy/test copying zippy/test/merge_and_macs.proto -> build/lib/zippy/test copying zippy/test/rsem.json -> build/lib/zippy/test copying zippy/test/rsem.proto -> build/lib/zippy/test copying zippy/test/subworkflow_params_test.json -> build/lib/zippy/test copying zippy/test/test_defaults.json -> build/lib/zippy/test copying zippy/test/test_make_params.py -> build/lib/zippy/test copying zippy/test/test_params.py -> build/lib/zippy/test installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/build_all.spec -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/bloom_kmer_finder.py -> build/bdist.linux-armv7l/wheel/zippy creating build/bdist.linux-armv7l/wheel/zippy/examples copying build/lib/zippy/examples/subworkflow_down.json -> build/bdist.linux-armv7l/wheel/zippy/examples copying build/lib/zippy/examples/docker.json -> build/bdist.linux-armv7l/wheel/zippy/examples copying build/lib/zippy/examples/chipseq.json -> build/bdist.linux-armv7l/wheel/zippy/examples copying build/lib/zippy/examples/rna.json -> build/bdist.linux-armv7l/wheel/zippy/examples copying build/lib/zippy/examples/subworkflow.json -> build/bdist.linux-armv7l/wheel/zippy/examples copying build/lib/zippy/star.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/modular_runner.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/run_edger.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/samplesheet.pyc -> build/bdist.linux-armv7l/wheel/zippy creating build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/defaults_include.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/merge_and_macs.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/test_params.py -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/rsem.proto -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/defaults_warn.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/rsem.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/import_test.proto -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/environment_params_test.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/defaults.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/dummy_params_test.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/test_defaults.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/test_make_params.py -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/OtherRunner.py -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/defaults_test.proto -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/defaults_ignore.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/merge_and_macs.proto -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/import_test.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/test/subworkflow_params_test.json -> build/bdist.linux-armv7l/wheel/zippy/test copying build/lib/zippy/edger.r -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/star.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/modular_helper.pyc -> build/bdist.linux-armv7l/wheel/zippy creating build/bdist.linux-armv7l/wheel/zippy/__pycache__ copying build/lib/zippy/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/zippy/__pycache__ copying build/lib/zippy/rna_stats.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/modular_runner.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/downsampling_bloom.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/bwa.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/utils.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/params.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/samplesheet.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/deseq.r -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/zippy.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/bwa.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/primer_dimer_miner.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/__init__.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/utils.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/make_params.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/make_params.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/params.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/bcl2fastq.pyc -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/zippy.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/modular_helper.py -> build/bdist.linux-armv7l/wheel/zippy copying build/lib/zippy/__init__.pyc -> build/bdist.linux-armv7l/wheel/zippy running install_egg_info Copying zippy_pipeline.egg-info to build/bdist.linux-armv7l/wheel/zippy_pipeline-2.1.3.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/zippy_pipeline-2.1.3.0.dist-info/WHEEL creating '/tmp/pip-wheel-8r1c2v9a/zippy_pipeline-2.1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'zippy/__init__.py' adding 'zippy/__init__.pyc' adding 'zippy/bcl2fastq.py' adding 'zippy/bcl2fastq.pyc' adding 'zippy/bloom_kmer_finder.py' adding 'zippy/build_all.spec' adding 'zippy/bwa.py' adding 'zippy/bwa.pyc' adding 'zippy/deseq.r' adding 'zippy/downsampling_bloom.py' adding 'zippy/edger.r' adding 'zippy/make_params.py' adding 'zippy/make_params.pyc' adding 'zippy/modular_helper.py' adding 'zippy/modular_helper.pyc' adding 'zippy/modular_runner.py' adding 'zippy/modular_runner.pyc' adding 'zippy/params.py' adding 'zippy/params.pyc' adding 'zippy/primer_dimer_miner.py' adding 'zippy/rna_stats.py' adding 'zippy/run_edger.py' adding 'zippy/samplesheet.py' adding 'zippy/samplesheet.pyc' adding 'zippy/star.py' adding 'zippy/star.pyc' adding 'zippy/utils.py' adding 'zippy/utils.pyc' adding 'zippy/zippy.py' adding 'zippy/zippy.pyc' adding 'zippy/__pycache__/__init__.cpython-34.pyc' adding 'zippy/examples/chipseq.json' adding 'zippy/examples/docker.json' adding 'zippy/examples/rna.json' adding 'zippy/examples/subworkflow.json' adding 'zippy/examples/subworkflow_down.json' adding 'zippy/test/OtherRunner.py' adding 'zippy/test/defaults.json' adding 'zippy/test/defaults_ignore.json' adding 'zippy/test/defaults_include.json' adding 'zippy/test/defaults_test.proto' adding 'zippy/test/defaults_warn.json' adding 'zippy/test/dummy_params_test.json' adding 'zippy/test/environment_params_test.json' adding 'zippy/test/import_test.json' adding 'zippy/test/import_test.proto' adding 'zippy/test/merge_and_macs.json' adding 'zippy/test/merge_and_macs.proto' adding 'zippy/test/rsem.json' adding 'zippy/test/rsem.proto' adding 'zippy/test/subworkflow_params_test.json' adding 'zippy/test/test_defaults.json' adding 'zippy/test/test_make_params.py' adding 'zippy/test/test_params.py' adding 'zippy_pipeline-2.1.3.0.dist-info/METADATA' adding 'zippy_pipeline-2.1.3.0.dist-info/WHEEL' adding 'zippy_pipeline-2.1.3.0.dist-info/dependency_links.txt' adding 'zippy_pipeline-2.1.3.0.dist-info/top_level.txt' adding 'zippy_pipeline-2.1.3.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for zippy-pipeline: finished with status 'done' Stored in directory: /tmp/tmprzxz4h95 Successfully built zippy-pipeline Cleaning up... Removing source in /tmp/pip-wheel-bj48zatj/zippy-pipeline Removed build tracker '/tmp/pip-req-tracker-6mpyjaog'