Created temporary directory: /tmp/pip-ephem-wheel-cache-3i85sbiz Created temporary directory: /tmp/pip-req-tracker-xf6c0zlh Created requirements tracker '/tmp/pip-req-tracker-xf6c0zlh' Created temporary directory: /tmp/pip-wheel-mskageey Collecting amptk==1.3.0 1 location(s) to search for versions of amptk: * https://pypi.org/simple/amptk/ Getting page https://pypi.org/simple/amptk/ Analyzing links from page https://pypi.org/simple/amptk/ Skipping link https://files.pythonhosted.org/packages/6f/34/5ca4622b12ca9815635d87f325b9190fe542592142dc9f9c940ee797be1b/amptk-1.3.0-py2-none-any.whl#sha256=cbff82063cd96b1e46e81b8ccd6e84dc190ee5358d423cb91d9ffa792644aa8d (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz#sha256=bb9b406c98685b446bd85c9377ce974b709e789165aff82a2ab9454c2e5c4bdb (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0), version: 1.3.0 Using version 1.3.0 (newest of versions: 1.3.0) Created temporary directory: /tmp/pip-unpack-zh8wu58u Downloading https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz (4.0MB) Downloading from URL https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz#sha256=bb9b406c98685b446bd85c9377ce974b709e789165aff82a2ab9454c2e5c4bdb (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0) Added amptk==1.3.0 from https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz#sha256=bb9b406c98685b446bd85c9377ce974b709e789165aff82a2ab9454c2e5c4bdb to build tracker '/tmp/pip-req-tracker-xf6c0zlh' Running setup.py (path:/tmp/pip-wheel-mskageey/amptk/setup.py) egg_info for package amptk Running command python setup.py egg_info running egg_info creating pip-egg-info/amptk.egg-info writing top-level names to pip-egg-info/amptk.egg-info/top_level.txt writing requirements to pip-egg-info/amptk.egg-info/requires.txt writing pip-egg-info/amptk.egg-info/PKG-INFO writing dependency_links to pip-egg-info/amptk.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/amptk.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/amptk.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/amptk.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-mskageey/amptk has version 1.3.0, which satisfies requirement amptk==1.3.0 from https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz#sha256=bb9b406c98685b446bd85c9377ce974b709e789165aff82a2ab9454c2e5c4bdb Removed amptk==1.3.0 from https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz#sha256=bb9b406c98685b446bd85c9377ce974b709e789165aff82a2ab9454c2e5c4bdb from build tracker '/tmp/pip-req-tracker-xf6c0zlh' Building wheels for collected packages: amptk Created temporary directory: /tmp/pip-wheel-sww5pe9n Running setup.py bdist_wheel for amptk: started Destination directory: /tmp/pip-wheel-sww5pe9n Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-mskageey/amptk/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-sww5pe9n running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/amptk copying amptk/assign_taxonomy.py -> build/lib/amptk copying amptk/drop.py -> build/lib/amptk copying amptk/unoise2.py -> build/lib/amptk copying amptk/info.py -> build/lib/amptk copying amptk/csv2heatmap.py -> build/lib/amptk copying amptk/__version__.py -> build/lib/amptk copying amptk/remove_samples.py -> build/lib/amptk copying amptk/lulu.py -> build/lib/amptk copying amptk/fastq2sra.py -> build/lib/amptk copying amptk/parse_adonis.py -> build/lib/amptk copying amptk/Guilds.py -> build/lib/amptk copying amptk/keep_samples.py -> build/lib/amptk copying amptk/unoise3.py -> build/lib/amptk copying amptk/process_illumina2.py -> build/lib/amptk copying amptk/summarize_taxonomy.py -> build/lib/amptk copying amptk/stats.py -> build/lib/amptk copying amptk/barcode_rarify.py -> build/lib/amptk copying amptk/OTU_cluster_ref.py -> build/lib/amptk copying amptk/OTU_cluster.py -> build/lib/amptk copying amptk/merge_metadata.py -> build/lib/amptk copying amptk/process_ion.py -> build/lib/amptk copying amptk/stackedBarGraph.py -> build/lib/amptk copying amptk/heatmap.py -> build/lib/amptk copying amptk/__init__.py -> build/lib/amptk copying amptk/extract_region.py -> build/lib/amptk copying amptk/filter.py -> build/lib/amptk copying amptk/pybam.py -> build/lib/amptk copying amptk/dada2.py -> build/lib/amptk copying amptk/collapse_taxonomy.py -> build/lib/amptk copying amptk/amptklib.py -> build/lib/amptk copying amptk/get_barcode_counts.py -> build/lib/amptk copying amptk/install.py -> build/lib/amptk copying amptk/process_illumina_folder.py -> build/lib/amptk copying amptk/process_illumina_raw.py -> build/lib/amptk running egg_info writing top-level names to amptk.egg-info/top_level.txt writing amptk.egg-info/PKG-INFO writing requirements to amptk.egg-info/requires.txt writing dependency_links to amptk.egg-info/dependency_links.txt reading manifest file 'amptk.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'amptk.egg-info/SOURCES.txt' copying amptk/check_version.R -> build/lib/amptk copying amptk/dada2_pipeline_nofilt.R -> build/lib/amptk copying amptk/phyloseq_nmds.R -> build/lib/amptk copying amptk/phyloseq_nmds_indicator.R -> build/lib/amptk copying amptk/runLULU.R -> build/lib/amptk creating build/lib/amptk/DB copying amptk/DB/.DS_Store -> build/lib/amptk/DB copying amptk/DB/amptk_mock1.fa -> build/lib/amptk/DB copying amptk/DB/amptk_mock2.fa -> build/lib/amptk/DB copying amptk/DB/amptk_mock3.fa -> build/lib/amptk/DB copying amptk/DB/amptk_synmock.fa -> build/lib/amptk/DB copying amptk/DB/ioncode_barcodes.fa -> build/lib/amptk/DB copying amptk/DB/ionxpress_barcodes.fa -> build/lib/amptk/DB running build_scripts creating build/scripts-3.4 copying and adjusting scripts/amptk -> build/scripts-3.4 copying and adjusting scripts/bold2amptk.py -> build/scripts-3.4 copying and adjusting scripts/bold2utax.py -> build/scripts-3.4 copying and adjusting scripts/amptk_synthetic_mock.py -> build/scripts-3.4 changing mode of build/scripts-3.4/amptk from 644 to 755 changing mode of build/scripts-3.4/bold2amptk.py from 644 to 755 changing mode of build/scripts-3.4/bold2utax.py from 644 to 755 changing mode of build/scripts-3.4/amptk_synthetic_mock.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/assign_taxonomy.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/drop.py -> build/bdist.linux-armv7l/wheel/amptk creating build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/amptk_mock3.fa -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/ioncode_barcodes.fa -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/.DS_Store -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/ionxpress_barcodes.fa -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/amptk_synmock.fa -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/amptk_mock2.fa -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/DB/amptk_mock1.fa -> build/bdist.linux-armv7l/wheel/amptk/DB copying build/lib/amptk/unoise2.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/info.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/csv2heatmap.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/__version__.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/remove_samples.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/lulu.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/fastq2sra.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/dada2_pipeline_nofilt.R -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/parse_adonis.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/runLULU.R -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/Guilds.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/keep_samples.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/unoise3.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/phyloseq_nmds.R -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/process_illumina2.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/summarize_taxonomy.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/stats.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/barcode_rarify.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/OTU_cluster_ref.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/OTU_cluster.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/merge_metadata.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/process_ion.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/stackedBarGraph.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/heatmap.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/__init__.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/extract_region.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/filter.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/pybam.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/dada2.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/collapse_taxonomy.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/check_version.R -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/amptklib.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/phyloseq_nmds_indicator.R -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/get_barcode_counts.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/install.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/process_illumina_folder.py -> build/bdist.linux-armv7l/wheel/amptk copying build/lib/amptk/process_illumina_raw.py -> build/bdist.linux-armv7l/wheel/amptk running install_egg_info Copying amptk.egg-info to build/bdist.linux-armv7l/wheel/amptk-1.3.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/amptk-1.3.0.data creating build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts copying build/scripts-3.4/bold2utax.py -> build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts copying build/scripts-3.4/amptk -> build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts copying build/scripts-3.4/amptk_synthetic_mock.py -> build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts copying build/scripts-3.4/bold2amptk.py -> build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts changing mode of build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts/bold2utax.py to 755 changing mode of build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts/amptk to 755 changing mode of build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts/amptk_synthetic_mock.py to 755 changing mode of build/bdist.linux-armv7l/wheel/amptk-1.3.0.data/scripts/bold2amptk.py to 755 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/amptk-1.3.0.dist-info/WHEEL creating '/tmp/pip-wheel-sww5pe9n/amptk-1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'amptk/Guilds.py' adding 'amptk/OTU_cluster.py' adding 'amptk/OTU_cluster_ref.py' adding 'amptk/__init__.py' adding 'amptk/__version__.py' adding 'amptk/amptklib.py' adding 'amptk/assign_taxonomy.py' adding 'amptk/barcode_rarify.py' adding 'amptk/check_version.R' adding 'amptk/collapse_taxonomy.py' adding 'amptk/csv2heatmap.py' adding 'amptk/dada2.py' adding 'amptk/dada2_pipeline_nofilt.R' adding 'amptk/drop.py' adding 'amptk/extract_region.py' adding 'amptk/fastq2sra.py' adding 'amptk/filter.py' adding 'amptk/get_barcode_counts.py' adding 'amptk/heatmap.py' adding 'amptk/info.py' adding 'amptk/install.py' adding 'amptk/keep_samples.py' adding 'amptk/lulu.py' adding 'amptk/merge_metadata.py' adding 'amptk/parse_adonis.py' adding 'amptk/phyloseq_nmds.R' adding 'amptk/phyloseq_nmds_indicator.R' adding 'amptk/process_illumina2.py' adding 'amptk/process_illumina_folder.py' adding 'amptk/process_illumina_raw.py' adding 'amptk/process_ion.py' adding 'amptk/pybam.py' adding 'amptk/remove_samples.py' adding 'amptk/runLULU.R' adding 'amptk/stackedBarGraph.py' adding 'amptk/stats.py' adding 'amptk/summarize_taxonomy.py' adding 'amptk/unoise2.py' adding 'amptk/unoise3.py' adding 'amptk/DB/.DS_Store' adding 'amptk/DB/amptk_mock1.fa' adding 'amptk/DB/amptk_mock2.fa' adding 'amptk/DB/amptk_mock3.fa' adding 'amptk/DB/amptk_synmock.fa' adding 'amptk/DB/ioncode_barcodes.fa' adding 'amptk/DB/ionxpress_barcodes.fa' adding 'amptk-1.3.0.data/scripts/amptk' adding 'amptk-1.3.0.data/scripts/amptk_synthetic_mock.py' adding 'amptk-1.3.0.data/scripts/bold2amptk.py' adding 'amptk-1.3.0.data/scripts/bold2utax.py' adding 'amptk-1.3.0.dist-info/LICENSE.md' adding 'amptk-1.3.0.dist-info/METADATA' adding 'amptk-1.3.0.dist-info/WHEEL' adding 'amptk-1.3.0.dist-info/top_level.txt' adding 'amptk-1.3.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for amptk: finished with status 'done' Stored in directory: /tmp/tmp49vu2_ao Successfully built amptk Cleaning up... Removing source in /tmp/pip-wheel-mskageey/amptk Removed build tracker '/tmp/pip-req-tracker-xf6c0zlh'