Created temporary directory: /tmp/pip-ephem-wheel-cache-rs9ly5m2 Created temporary directory: /tmp/pip-req-tracker-_k56thgk Created requirements tracker '/tmp/pip-req-tracker-_k56thgk' Created temporary directory: /tmp/pip-wheel-sp42f8w5 Collecting medaka==0.5.2 1 location(s) to search for versions of medaka: * https://pypi.org/simple/medaka/ Getting page https://pypi.org/simple/medaka/ Analyzing links from page https://pypi.org/simple/medaka/ Skipping link https://files.pythonhosted.org/packages/26/33/e2962890d3b87154f30e038a1128cb5be7260605e64b755125bb7d1ba58a/medaka-0.4.1-cp34-cp34m-manylinux1_x86_64.whl#sha256=aa62dcdcde9ee3fdd09290fbc5b54d7e2e549769adef0946433eb50792d9e690 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/b9/0a/66d4188bc68e407da24d42d9b92570816f256448766f724faac275739392/medaka-0.4.1-cp35-cp35m-manylinux1_x86_64.whl#sha256=8449409abb6d9dbc9d6b2629cde81b6bfcae4783789da41de8483971ac59c30c (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/60/5e/c39a1cdb311434813c37f51c45cbefdc863493c19d277054a8ef829b0cd8/medaka-0.4.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=c604d09067b67f3c9e69e8b918f7dc63a08830eef9e92ec7b44e6203e033eb39 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/4b/7e/6520185af23ac4ec3994b7e24120f6336d0ff1ffd6437c407e0758c713a5/medaka-0.4.1.tar.gz#sha256=36b7ae02d89ab8bddcd6f15b033a381610c8601997bd7d056ab0b11b9e4affe0 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7), version: 0.4.1 Skipping link https://files.pythonhosted.org/packages/7e/b9/0c784e5b2448c2834ae8ac993ea8ac08b5961770f16887e892a4d00f2155/medaka-0.4.3-cp34-cp34m-manylinux1_x86_64.whl#sha256=971c4d11192632adc8fe503f7ccac2ce6f31e19b7650835dc6d9da8d72c2d949 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/b6/ed/2ca7a4e82e0e81b7c1c27aaa79f54cccae06c67e7a8a84b634565358ca52/medaka-0.4.3-cp35-cp35m-manylinux1_x86_64.whl#sha256=c730bfec937c24d8b6e0c86cc2e1d7d0a7279a1db520badb2603bf20b6c63181 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/70/e9/27de839a071bb272e928277dcc2d386e45649e2e609df5308f679e53470c/medaka-0.4.3-cp36-cp36m-manylinux1_x86_64.whl#sha256=6126836e9b1450657ef48fbd11d6b8fc214e618d54dccf26fed6c9cfef2fb691 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/72/11/27adae396526e35ca1ad8af639740e6ca4c096603d7b7319cecffa2c538a/medaka-0.4.3.tar.gz#sha256=429cbb41db3f70b1238fa48ff98d4354426b4180f99a7117bde9a843cf35f770 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7), version: 0.4.3 Skipping link https://files.pythonhosted.org/packages/8c/ab/5c59ad2f66c4a543e4cdfac307ebaf33c77db4b17a7d489d7eb83fa5d6bf/medaka-0.5.0-cp34-cp34m-manylinux1_x86_64.whl#sha256=cc5c91928191532cff5f85c9b2db48c7475bfef0772b129aa690bb34bf0af7e0 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/d5/79/171579bde905f3d6273c390fa7b0cddb8e5800d2e7df3b4fa64f39d9f462/medaka-0.5.0-cp35-cp35m-manylinux1_x86_64.whl#sha256=a755aae8dbd7eacdc7b279323bdf6d379b48a35854ba428f463f569b5ddc7af6 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/eb/39/bc858d8b9dbe849677971260dc1a71254991eb6e989f922824c6d23f20d8/medaka-0.5.0-cp36-cp36m-manylinux1_x86_64.whl#sha256=7eda185d523a04197613a970dad9f5b4fc05f7b38c6106fd02fddd37f58d7522 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/ed/f2/001f30f4b12de47daf3660d07c05a5256c5d5917353b3f97864fb01887ca/medaka-0.5.0.tar.gz#sha256=11794dc680563b7a504488b0074f684d389d7fbf2195f13c85656bb603840378 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7), version: 0.5.0 Skipping link https://files.pythonhosted.org/packages/df/ea/ca83da715b81858ffeb3d754e78435cfebd48d39534f4849885067ac51eb/medaka-0.5.2-cp34-cp34m-manylinux1_x86_64.whl#sha256=e61b6a649bd945544a20d2fd0032cb778456310b4faa1da010cfe7f8dc7b9255 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/58/dc/02ffe455cc9fe8e5437f7c14386c798f30774a32b81986d0e08178f2a43b/medaka-0.5.2-cp35-cp35m-manylinux1_x86_64.whl#sha256=a398018ccee51ae1638d1a66355e75e5780c71e4aab6033a263b0ca6d95beb2d (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Skipping link https://files.pythonhosted.org/packages/56/96/4b273f88330ee8721c731ebc3784895d5f0be4ec9e62ebc5adbf5acfb26e/medaka-0.5.2-cp36-cp36m-manylinux1_x86_64.whl#sha256=6a6f6472674690a412ff704bb812acf143bbc6c1c22b6b22260a9baa6668e73a (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz#sha256=42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7), version: 0.5.2 Using version 0.5.2 (newest of versions: 0.5.2) Created temporary directory: /tmp/pip-unpack-kers32pv Downloading https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz (10.4MB) Downloading from URL https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz#sha256=42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6 (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) Added medaka==0.5.2 from https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz#sha256=42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6 to build tracker '/tmp/pip-req-tracker-_k56thgk' Running setup.py (path:/tmp/pip-wheel-sp42f8w5/medaka/setup.py) egg_info for package medaka Running command python setup.py egg_info running egg_info creating pip-egg-info/medaka.egg-info writing requirements to pip-egg-info/medaka.egg-info/requires.txt writing top-level names to pip-egg-info/medaka.egg-info/top_level.txt writing entry points to pip-egg-info/medaka.egg-info/entry_points.txt writing pip-egg-info/medaka.egg-info/PKG-INFO writing dependency_links to pip-egg-info/medaka.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/medaka.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/medaka.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'cffi_modules' warnings.warn(msg) no previously-included directories found matching 'build' no previously-included directories found matching 'docs' writing manifest file 'pip-egg-info/medaka.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-sp42f8w5/medaka has version 0.5.2, which satisfies requirement medaka==0.5.2 from https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz#sha256=42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6 Removed medaka==0.5.2 from https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz#sha256=42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6 from build tracker '/tmp/pip-req-tracker-_k56thgk' Building wheels for collected packages: medaka Created temporary directory: /tmp/pip-wheel-yb_651q3 Running setup.py bdist_wheel for medaka: started Destination directory: /tmp/pip-wheel-yb_651q3 Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-sp42f8w5/medaka/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-yb_651q3 /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'cffi_modules' warnings.warn(msg) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/medaka copying medaka/__init__.py -> build/lib/medaka copying medaka/stitch.py -> build/lib/medaka copying medaka/medaka_counts.py -> build/lib/medaka copying medaka/inference.py -> build/lib/medaka copying medaka/datastore.py -> build/lib/medaka copying medaka/vcf.py -> build/lib/medaka copying medaka/features.py -> build/lib/medaka copying medaka/labels.py -> build/lib/medaka copying medaka/common.py -> build/lib/medaka copying medaka/keras_ext.py -> build/lib/medaka copying medaka/medaka.py -> build/lib/medaka copying medaka/models.py -> build/lib/medaka creating build/lib/medaka/data copying medaka/data/r941_flip_model.hdf5 -> build/lib/medaka/data copying medaka/data/medaka_model.hdf5 -> build/lib/medaka/data running build_scripts creating build/scripts-3.4 copying scripts/medaka_consensus -> build/scripts-3.4 copying scripts/mini_align -> build/scripts-3.4 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/medaka creating build/bdist.linux-armv7l/wheel/medaka/data copying build/lib/medaka/data/r941_flip_model.hdf5 -> build/bdist.linux-armv7l/wheel/medaka/data copying build/lib/medaka/data/medaka_model.hdf5 -> build/bdist.linux-armv7l/wheel/medaka/data copying build/lib/medaka/__init__.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/stitch.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/medaka_counts.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/inference.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/datastore.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/vcf.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/features.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/labels.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/common.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/keras_ext.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/medaka.py -> build/bdist.linux-armv7l/wheel/medaka copying build/lib/medaka/models.py -> build/bdist.linux-armv7l/wheel/medaka running install_egg_info running egg_info writing top-level names to medaka.egg-info/top_level.txt writing medaka.egg-info/PKG-INFO writing requirements to medaka.egg-info/requires.txt writing dependency_links to medaka.egg-info/dependency_links.txt writing entry points to medaka.egg-info/entry_points.txt reading manifest file 'medaka.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'build' no previously-included directories found matching 'docs' writing manifest file 'medaka.egg-info/SOURCES.txt' Copying medaka.egg-info to build/bdist.linux-armv7l/wheel/medaka-0.5.2-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/medaka-0.5.2.data creating build/bdist.linux-armv7l/wheel/medaka-0.5.2.data/scripts copying build/scripts-3.4/medaka_consensus -> build/bdist.linux-armv7l/wheel/medaka-0.5.2.data/scripts copying build/scripts-3.4/mini_align -> build/bdist.linux-armv7l/wheel/medaka-0.5.2.data/scripts changing mode of build/bdist.linux-armv7l/wheel/medaka-0.5.2.data/scripts/medaka_consensus to 755 changing mode of build/bdist.linux-armv7l/wheel/medaka-0.5.2.data/scripts/mini_align to 755 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/medaka-0.5.2.dist-info/WHEEL creating '/tmp/pip-wheel-yb_651q3/medaka-0.5.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'medaka/__init__.py' adding 'medaka/common.py' adding 'medaka/datastore.py' adding 'medaka/features.py' adding 'medaka/inference.py' adding 'medaka/keras_ext.py' adding 'medaka/labels.py' adding 'medaka/medaka.py' adding 'medaka/medaka_counts.py' adding 'medaka/models.py' adding 'medaka/stitch.py' adding 'medaka/vcf.py' adding 'medaka/data/medaka_model.hdf5' adding 'medaka/data/r941_flip_model.hdf5' adding 'medaka-0.5.2.data/scripts/medaka_consensus' adding 'medaka-0.5.2.data/scripts/mini_align' adding 'medaka-0.5.2.dist-info/LICENSE.md' adding 'medaka-0.5.2.dist-info/METADATA' adding 'medaka-0.5.2.dist-info/WHEEL' adding 'medaka-0.5.2.dist-info/entry_points.txt' adding 'medaka-0.5.2.dist-info/top_level.txt' adding 'medaka-0.5.2.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for medaka: finished with status 'done' Stored in directory: /tmp/tmpyslg232d Successfully built medaka Cleaning up... Removing source in /tmp/pip-wheel-sp42f8w5/medaka Removed build tracker '/tmp/pip-req-tracker-_k56thgk'