Created temporary directory: /tmp/pip-ephem-wheel-cache-tfcm0fob Created temporary directory: /tmp/pip-req-tracker-zwbw0qv3 Created requirements tracker '/tmp/pip-req-tracker-zwbw0qv3' Created temporary directory: /tmp/pip-wheel-5edw3fzg Collecting scipion-em-xmipp==1.0.0b1 1 location(s) to search for versions of scipion-em-xmipp: * https://pypi.org/simple/scipion-em-xmipp/ Getting page https://pypi.org/simple/scipion-em-xmipp/ Analyzing links from page https://pypi.org/simple/scipion-em-xmipp/ Found link https://files.pythonhosted.org/packages/ac/e8/0b29e46431aa1223befa2a698d198863c12304274306b16832cfd454e3f9/scipion-em-xmipp-1.0.0a1.tar.gz#sha256=4fd9241c7309d7d6b7974e75725b15273b23e03f4312c835c3d88cad41e9eb53 (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0a1 Found link https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz#sha256=e832df0ef28809c985011c60136f02da5c81c351b12f72eda1eee8ec27b74e50 (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0b1 Using version 1.0.0b1 (newest of versions: 1.0.0b1) Created temporary directory: /tmp/pip-unpack-avajurb8 Downloading https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz (478kB) Downloading from URL https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz#sha256=e832df0ef28809c985011c60136f02da5c81c351b12f72eda1eee8ec27b74e50 (from https://pypi.org/simple/scipion-em-xmipp/) Added scipion-em-xmipp==1.0.0b1 from https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz#sha256=e832df0ef28809c985011c60136f02da5c81c351b12f72eda1eee8ec27b74e50 to build tracker '/tmp/pip-req-tracker-zwbw0qv3' Running setup.py (path:/tmp/pip-wheel-5edw3fzg/scipion-em-xmipp/setup.py) egg_info for package scipion-em-xmipp Running command python setup.py egg_info running egg_info creating pip-egg-info/scipion_em_xmipp.egg-info writing top-level names to pip-egg-info/scipion_em_xmipp.egg-info/top_level.txt writing dependency_links to pip-egg-info/scipion_em_xmipp.egg-info/dependency_links.txt writing pip-egg-info/scipion_em_xmipp.egg-info/PKG-INFO writing manifest file 'pip-egg-info/scipion_em_xmipp.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/scipion_em_xmipp.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 1: unknown action '**`changes.txt`**:' warning: manifest_maker: MANIFEST.in, line 4: unknown action '-' warning: manifest_maker: MANIFEST.in, line 9: unknown action '**`MANIFEST.in`**:' warning: no files found matching 'LICENCE' warning: manifest_maker: MANIFEST.in, line 15: unknown action '**`.gitignore`**:' warning: manifest_maker: MANIFEST.in, line 17: unknown action '*.pyc' warning: manifest_maker: MANIFEST.in, line 18: unknown action '*.pyo' warning: manifest_maker: MANIFEST.in, line 20: unknown action 'dist/' warning: manifest_maker: MANIFEST.in, line 21: unknown action '/*.egg-info' warning: manifest_maker: MANIFEST.in, line 22: unknown action 'venv' writing manifest file 'pip-egg-info/scipion_em_xmipp.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-5edw3fzg/scipion-em-xmipp has version 1.0.0b1, which satisfies requirement scipion-em-xmipp==1.0.0b1 from https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz#sha256=e832df0ef28809c985011c60136f02da5c81c351b12f72eda1eee8ec27b74e50 Removed scipion-em-xmipp==1.0.0b1 from https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz#sha256=e832df0ef28809c985011c60136f02da5c81c351b12f72eda1eee8ec27b74e50 from build tracker '/tmp/pip-req-tracker-zwbw0qv3' Building wheels for collected packages: scipion-em-xmipp Created temporary directory: /tmp/pip-wheel-rexx5ioj Running setup.py bdist_wheel for scipion-em-xmipp: started Destination directory: /tmp/pip-wheel-rexx5ioj Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-5edw3fzg/scipion-em-xmipp/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-rexx5ioj running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/xmipp3 copying xmipp3/base.py -> build/lib/xmipp3 copying xmipp3/bibtex.py -> build/lib/xmipp3 copying xmipp3/utils.py -> build/lib/xmipp3 copying xmipp3/constants.py -> build/lib/xmipp3 copying xmipp3/__init__.py -> build/lib/xmipp3 copying xmipp3/programs.py -> build/lib/xmipp3 copying xmipp3/wizards.py -> build/lib/xmipp3 creating build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_split_volume.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/nma_plotter.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_solid_angles.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_nma_dimred.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_extract_unit_cell.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_nma_alignment.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_nma.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_cltomo.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_mltomo.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_resolution_monotomo.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_structure_mapping.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers copying xmipp3/viewers/viewer_pseudoatoms.py -> build/lib/xmipp3/viewers creating build/lib/xmipp3/convert copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert creating build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_mltomo.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_monotomo.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_extract_unit_cell.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests copying xmipp3/tests/test_protocol_structure_mapping.py -> build/lib/xmipp3/tests creating build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_split_volume.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_movie_average.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_movie_correlation.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_3dbionotes.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_enrich.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_mltomo.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_realignment_classes.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_eliminate_empty_particles.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_consensus_classes3D.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_solid_angles.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_cltomo.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_extract_unit_cell.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_resolution_monotomo.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols creating build/lib/xmipp3/viewers/nma_gui copying xmipp3/viewers/nma_gui/matplotlib_point_selector.py -> build/lib/xmipp3/viewers/nma_gui copying xmipp3/viewers/nma_gui/tk_trajectories.py -> build/lib/xmipp3/viewers/nma_gui copying xmipp3/viewers/nma_gui/__init__.py -> build/lib/xmipp3/viewers/nma_gui copying xmipp3/viewers/nma_gui/matplotlib_point_path.py -> build/lib/xmipp3/viewers/nma_gui copying xmipp3/viewers/nma_gui/tk_clustering.py -> build/lib/xmipp3/viewers/nma_gui creating build/lib/xmipp3/protocols/protocol_projmatch copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch creating build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_nma_alignment.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_batch_cluster.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_structure_mapping.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/data.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/convert.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/__init__.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_nma_choose.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_nma.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_nma_dimred.py -> build/lib/xmipp3/protocols/nma copying xmipp3/protocols/nma/protocol_nma_base.py -> build/lib/xmipp3/protocols/nma creating build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess creating build/lib/xmipp3/protocols/pdb copying xmipp3/protocols/pdb/protocol_convert_pdb.py -> build/lib/xmipp3/protocols/pdb copying xmipp3/protocols/pdb/protocol_pseudoatoms.py -> build/lib/xmipp3/protocols/pdb copying xmipp3/protocols/pdb/__init__.py -> build/lib/xmipp3/protocols/pdb copying xmipp3/protocols/pdb/protocol_pseudoatoms_base.py -> build/lib/xmipp3/protocols/pdb installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/xmipp3 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/xmipp3 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/xmipp3 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/nma_plotter.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_nma_dimred.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_extract_unit_cell.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_nma_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_nma.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_cltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers creating build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui copying build/lib/xmipp3/viewers/nma_gui/matplotlib_point_selector.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui copying build/lib/xmipp3/viewers/nma_gui/tk_trajectories.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui copying build/lib/xmipp3/viewers/nma_gui/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui copying build/lib/xmipp3/viewers/nma_gui/matplotlib_point_path.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui copying build/lib/xmipp3/viewers/nma_gui/tk_clustering.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_resolution_monotomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_structure_mapping.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/viewers/viewer_pseudoatoms.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/xmipp3 creating build/bdist.linux-armv7l/wheel/xmipp3/convert copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/xmipp3 creating build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_mltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_monotomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_extract_unit_cell.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/tests/test_protocol_structure_mapping.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/xmipp3 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch copying build/lib/xmipp3/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_movie_correlation.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_nma_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_batch_cluster.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_structure_mapping.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/data.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/convert.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_nma_choose.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_nma.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_nma_dimred.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/nma/protocol_nma_base.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_3dbionotes.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_realignment_classes.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb copying build/lib/xmipp3/protocols/pdb/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb copying build/lib/xmipp3/protocols/pdb/protocol_pseudoatoms.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb copying build/lib/xmipp3/protocols/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb copying build/lib/xmipp3/protocols/pdb/protocol_pseudoatoms_base.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb copying build/lib/xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_eliminate_empty_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_cltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_extract_unit_cell.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_resolution_monotomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/xmipp3 running install_egg_info running egg_info writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt writing top-level names to scipion_em_xmipp.egg-info/top_level.txt writing scipion_em_xmipp.egg-info/PKG-INFO reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 1: unknown action '**`changes.txt`**:' warning: manifest_maker: MANIFEST.in, line 4: unknown action '-' warning: manifest_maker: MANIFEST.in, line 9: unknown action '**`MANIFEST.in`**:' warning: no files found matching 'LICENCE' warning: manifest_maker: MANIFEST.in, line 15: unknown action '**`.gitignore`**:' warning: manifest_maker: MANIFEST.in, line 17: unknown action '*.pyc' warning: manifest_maker: MANIFEST.in, line 18: unknown action '*.pyo' warning: manifest_maker: MANIFEST.in, line 20: unknown action 'dist/' warning: manifest_maker: MANIFEST.in, line 21: unknown action '/*.egg-info' warning: manifest_maker: MANIFEST.in, line 22: unknown action 'venv' writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_xmipp-1.0.0b1-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-1.0.0b1.dist-info/WHEEL creating '/tmp/pip-wheel-rexx5ioj/scipion_em_xmipp-1.0.0b1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'xmipp3/__init__.py' adding 'xmipp3/base.py' adding 'xmipp3/bibtex.py' adding 'xmipp3/constants.py' adding 'xmipp3/programs.py' adding 'xmipp3/utils.py' adding 'xmipp3/wizards.py' adding 'xmipp3/convert/__init__.py' adding 'xmipp3/convert/convert.py' adding 'xmipp3/convert/dataimport.py' adding 'xmipp3/protocols/__init__.py' adding 'xmipp3/protocols/protocol_3dbionotes.py' adding 'xmipp3/protocols/protocol_align_volume.py' adding 'xmipp3/protocols/protocol_apply_alignment.py' adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' adding 'xmipp3/protocols/protocol_break_symmetry.py' adding 'xmipp3/protocols/protocol_cl2d.py' adding 'xmipp3/protocols/protocol_cl2d_align.py' adding 'xmipp3/protocols/protocol_classification_gpuCorr.py' adding 'xmipp3/protocols/protocol_classification_gpuCorr_full.py' adding 'xmipp3/protocols/protocol_classification_gpuCorr_semi.py' adding 'xmipp3/protocols/protocol_cltomo.py' adding 'xmipp3/protocols/protocol_compare_angles.py' adding 'xmipp3/protocols/protocol_compare_reprojections.py' adding 'xmipp3/protocols/protocol_consensus_classes3D.py' adding 'xmipp3/protocols/protocol_create_gallery.py' adding 'xmipp3/protocols/protocol_ctf_consensus.py' adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' adding 'xmipp3/protocols/protocol_ctf_micrographs.py' adding 'xmipp3/protocols/protocol_deep_denoising.py' adding 'xmipp3/protocols/protocol_denoise_particles.py' adding 'xmipp3/protocols/protocol_eliminate_empty_particles.py' adding 'xmipp3/protocols/protocol_enrich.py' adding 'xmipp3/protocols/protocol_extract_particles.py' adding 'xmipp3/protocols/protocol_extract_particles_movies.py' adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' adding 'xmipp3/protocols/protocol_extract_unit_cell.py' adding 'xmipp3/protocols/protocol_generate_reprojections.py' adding 'xmipp3/protocols/protocol_helical_parameters.py' adding 'xmipp3/protocols/protocol_kerdensom.py' adding 'xmipp3/protocols/protocol_metaprotocol_create_output.py' adding 'xmipp3/protocols/protocol_metaprotocol_create_subset.py' adding 'xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' adding 'xmipp3/protocols/protocol_ml2d.py' adding 'xmipp3/protocols/protocol_mltomo.py' adding 'xmipp3/protocols/protocol_movie_average.py' adding 'xmipp3/protocols/protocol_movie_correlation.py' adding 'xmipp3/protocols/protocol_movie_gain.py' adding 'xmipp3/protocols/protocol_movie_max_shift.py' adding 'xmipp3/protocols/protocol_movie_opticalflow.py' adding 'xmipp3/protocols/protocol_multiple_fscs.py' adding 'xmipp3/protocols/protocol_multireference_alignability.py' adding 'xmipp3/protocols/protocol_normalize_strain.py' adding 'xmipp3/protocols/protocol_particle_pick.py' adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' adding 'xmipp3/protocols/protocol_random_conical_tilt.py' adding 'xmipp3/protocols/protocol_ransac.py' adding 'xmipp3/protocols/protocol_realignment_classes.py' adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' adding 'xmipp3/protocols/protocol_reconstruct_heterogeneous.py' adding 'xmipp3/protocols/protocol_reconstruct_highres.py' adding 'xmipp3/protocols/protocol_reconstruct_significant.py' adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' adding 'xmipp3/protocols/protocol_resolution3d.py' adding 'xmipp3/protocols/protocol_resolution_directional.py' adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' adding 'xmipp3/protocols/protocol_resolution_monotomo.py' adding 'xmipp3/protocols/protocol_rotational_spectra.py' adding 'xmipp3/protocols/protocol_rotational_symmetry.py' adding 'xmipp3/protocols/protocol_screen_particles.py' adding 'xmipp3/protocols/protocol_solid_angles.py' adding 'xmipp3/protocols/protocol_split_volume.py' adding 'xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py' adding 'xmipp3/protocols/protocol_subtract_projection.py' adding 'xmipp3/protocols/protocol_trigger_data.py' adding 'xmipp3/protocols/protocol_validate_nontilt.py' adding 'xmipp3/protocols/protocol_validate_overfitting.py' adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' adding 'xmipp3/protocols/protocol_volume_strain.py' adding 'xmipp3/protocols/protocol_write_testC.py' adding 'xmipp3/protocols/protocol_write_testP.py' adding 'xmipp3/protocols/nma/__init__.py' adding 'xmipp3/protocols/nma/convert.py' adding 'xmipp3/protocols/nma/data.py' adding 'xmipp3/protocols/nma/protocol_batch_cluster.py' adding 'xmipp3/protocols/nma/protocol_nma.py' adding 'xmipp3/protocols/nma/protocol_nma_alignment.py' adding 'xmipp3/protocols/nma/protocol_nma_base.py' adding 'xmipp3/protocols/nma/protocol_nma_choose.py' adding 'xmipp3/protocols/nma/protocol_nma_dimred.py' adding 'xmipp3/protocols/nma/protocol_structure_mapping.py' adding 'xmipp3/protocols/pdb/__init__.py' adding 'xmipp3/protocols/pdb/protocol_convert_pdb.py' adding 'xmipp3/protocols/pdb/protocol_pseudoatoms.py' adding 'xmipp3/protocols/pdb/protocol_pseudoatoms_base.py' adding 'xmipp3/protocols/protocol_preprocess/__init__.py' adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' adding 'xmipp3/protocols/protocol_projmatch/__init__.py' adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' adding 'xmipp3/tests/__init__.py' adding 'xmipp3/tests/test_convert_xmipp.py' adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' adding 'xmipp3/tests/test_protocol_compare_angles.py' adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' adding 'xmipp3/tests/test_protocol_ctf_consensus.py' adding 'xmipp3/tests/test_protocol_deep_denoising.py' adding 'xmipp3/tests/test_protocol_extract_unit_cell.py' adding 'xmipp3/tests/test_protocol_multiple_fsc.py' adding 'xmipp3/tests/test_protocol_multireference_alignability.py' adding 'xmipp3/tests/test_protocol_structure_mapping.py' adding 'xmipp3/tests/test_protocol_validate_overfitting.py' adding 'xmipp3/tests/test_protocols_add_noise.py' adding 'xmipp3/tests/test_protocols_gpuCorr_classifier.py' adding 'xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py' adding 'xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py' adding 'xmipp3/tests/test_protocols_highres.py' adding 'xmipp3/tests/test_protocols_localdeblur.py' adding 'xmipp3/tests/test_protocols_mixed_movies.py' adding 'xmipp3/tests/test_protocols_mltomo.py' adding 'xmipp3/tests/test_protocols_monores.py' adding 'xmipp3/tests/test_protocols_monotomo.py' adding 'xmipp3/tests/test_protocols_realignment_classes.py' adding 'xmipp3/tests/test_protocols_solid_angles.py' adding 'xmipp3/tests/test_protocols_subtract_projection.py' adding 'xmipp3/tests/test_protocols_xmipp_2d.py' adding 'xmipp3/tests/test_protocols_xmipp_3d.py' adding 'xmipp3/tests/test_protocols_xmipp_mics.py' adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' adding 'xmipp3/tests/test_protocols_xmipp_movies.py' adding 'xmipp3/viewers/__init__.py' adding 'xmipp3/viewers/nma_plotter.py' adding 'xmipp3/viewers/plotter.py' adding 'xmipp3/viewers/viewer.py' adding 'xmipp3/viewers/viewer_cl2d.py' adding 'xmipp3/viewers/viewer_cltomo.py' adding 'xmipp3/viewers/viewer_ctf_consensus.py' adding 'xmipp3/viewers/viewer_extract_unit_cell.py' adding 'xmipp3/viewers/viewer_ml2d.py' adding 'xmipp3/viewers/viewer_mltomo.py' adding 'xmipp3/viewers/viewer_movie_alignment.py' adding 'xmipp3/viewers/viewer_nma.py' adding 'xmipp3/viewers/viewer_nma_alignment.py' adding 'xmipp3/viewers/viewer_nma_dimred.py' adding 'xmipp3/viewers/viewer_normalize_strain.py' adding 'xmipp3/viewers/viewer_projmatch.py' adding 'xmipp3/viewers/viewer_pseudoatoms.py' adding 'xmipp3/viewers/viewer_ransac.py' adding 'xmipp3/viewers/viewer_reconstruct_highres.py' adding 'xmipp3/viewers/viewer_resolution3d.py' adding 'xmipp3/viewers/viewer_resolution_directional.py' adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' adding 'xmipp3/viewers/viewer_resolution_monotomo.py' adding 'xmipp3/viewers/viewer_solid_angles.py' adding 'xmipp3/viewers/viewer_split_volume.py' adding 'xmipp3/viewers/viewer_structure_mapping.py' adding 'xmipp3/viewers/viewer_swarm.py' adding 'xmipp3/viewers/viewer_validate_nontilt.py' adding 'xmipp3/viewers/viewer_validate_overfitting.py' adding 'xmipp3/viewers/viewer_volume_strain.py' adding 'xmipp3/viewers/nma_gui/__init__.py' adding 'xmipp3/viewers/nma_gui/matplotlib_point_path.py' adding 'xmipp3/viewers/nma_gui/matplotlib_point_selector.py' adding 'xmipp3/viewers/nma_gui/tk_clustering.py' adding 'xmipp3/viewers/nma_gui/tk_trajectories.py' adding 'scipion_em_xmipp-1.0.0b1.dist-info/METADATA' adding 'scipion_em_xmipp-1.0.0b1.dist-info/WHEEL' adding 'scipion_em_xmipp-1.0.0b1.dist-info/top_level.txt' adding 'scipion_em_xmipp-1.0.0b1.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for scipion-em-xmipp: finished with status 'done' Stored in directory: /tmp/tmpvzjuppee Successfully built scipion-em-xmipp Cleaning up... Removing source in /tmp/pip-wheel-5edw3fzg/scipion-em-xmipp Removed build tracker '/tmp/pip-req-tracker-zwbw0qv3'