Created temporary directory: /tmp/pip-ephem-wheel-cache-mj8ovgl4
Created temporary directory: /tmp/pip-req-tracker-_48cyfvx
Created requirements tracker '/tmp/pip-req-tracker-_48cyfvx'
Created temporary directory: /tmp/pip-wheel-h6scd4em
Collecting AdaptivePELE==1.6
  1 location(s) to search for versions of AdaptivePELE:
  * https://pypi.org/simple/adaptivepele/
  Getting page https://pypi.org/simple/adaptivepele/
  Analyzing links from page https://pypi.org/simple/adaptivepele/
    Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
    Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
    Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
  Using version 1.6 (newest of versions: 1.6)
  Created temporary directory: /tmp/pip-unpack-do1z5q2c
  Downloading https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz (4.5MB)
  Downloading from URL https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/)
  Added AdaptivePELE==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 to build tracker '/tmp/pip-req-tracker-_48cyfvx'
  Running setup.py (path:/tmp/pip-wheel-h6scd4em/AdaptivePELE/setup.py) egg_info for package AdaptivePELE
    Running command python setup.py egg_info
    running egg_info
    creating pip-egg-info/AdaptivePELE.egg-info
    writing top-level names to pip-egg-info/AdaptivePELE.egg-info/top_level.txt
    writing requirements to pip-egg-info/AdaptivePELE.egg-info/requires.txt
    writing pip-egg-info/AdaptivePELE.egg-info/PKG-INFO
    writing dependency_links to pip-egg-info/AdaptivePELE.egg-info/dependency_links.txt
    writing manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
    reading manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    writing manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-h6scd4em/AdaptivePELE has version 1.6, which satisfies requirement AdaptivePELE==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5
  Removed AdaptivePELE==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 from build tracker '/tmp/pip-req-tracker-_48cyfvx'
Building wheels for collected packages: AdaptivePELE
  Created temporary directory: /tmp/pip-wheel-b0ucdz4q
  Running setup.py bdist_wheel for AdaptivePELE: started
  Destination directory: /tmp/pip-wheel-b0ucdz4q
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-h6scd4em/AdaptivePELE/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-b0ucdz4q
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-armv7l-3.5
  creating build/lib.linux-armv7l-3.5/AdaptivePELE
  copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
  copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
  copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
  copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
  copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/validator
  copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
  copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
  copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
  copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
  copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
  copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
  copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/constants
  copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
  copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
  copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
  copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
  copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
  copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
  copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
  copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
  copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
  copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
  copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
  copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
  copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
  copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
  copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
  copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
  copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
  copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
  copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
  creating build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
  copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
  copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
  running build_ext
  skipping 'AdaptivePELE/atomset/atomset.c' Cython extension (up-to-date)
  building 'AdaptivePELE.atomset.atomset' extension
  creating build/temp.linux-armv7l-3.5
  creating build/temp.linux-armv7l-3.5/AdaptivePELE
  creating build/temp.linux-armv7l-3.5/AdaptivePELE/atomset
  arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o
  In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                   from AdaptivePELE/atomset/atomset.c:610:
  /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   #warning "Using deprecated NumPy API, disable it by " \
    ^~~~~~~
  arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so
  skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
  building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
  arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
  In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                   from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
  /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   #warning "Using deprecated NumPy API, disable it by " \
    ^~~~~~~
  arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so
  skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
  building 'AdaptivePELE.atomset.RMSDCalculator' extension
  arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o
  In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                   from AdaptivePELE/atomset/RMSDCalculator.c:502:
  /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   #warning "Using deprecated NumPy API, disable it by " \
    ^~~~~~~
  arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so
  skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
  building 'AdaptivePELE.freeEnergies.utils' extension
  creating build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies
  arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o
  In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                   from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                   from AdaptivePELE/freeEnergies/utils.c:610:
  /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   #warning "Using deprecated NumPy API, disable it by " \
    ^~~~~~~
  arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
  copying build/lib.linux-armv7l-3.5/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
  running install_egg_info
  running egg_info
  writing requirements to AdaptivePELE.egg-info/requires.txt
  writing top-level names to AdaptivePELE.egg-info/top_level.txt
  writing AdaptivePELE.egg-info/PKG-INFO
  writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
  reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
  Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.6-py3.5.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.6.dist-info/WHEEL
  creating '/tmp/pip-wheel-b0ucdz4q/AdaptivePELE-1.6-cp35-cp35m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
  adding 'AdaptivePELE/__init__.py'
  adding 'AdaptivePELE/adaptiveSampling.py'
  adding 'AdaptivePELE/automateRoundsAdaptive.py'
  adding 'AdaptivePELE/makeRelease.py'
  adding 'AdaptivePELE/runAllTests.py'
  adding 'AdaptivePELE/analysis/__init__.py'
  adding 'AdaptivePELE/analysis/addRejectedSteps.py'
  adding 'AdaptivePELE/analysis/analyse.py'
  adding 'AdaptivePELE/analysis/analyseClustering.py'
  adding 'AdaptivePELE/analysis/autoCorrelation.py'
  adding 'AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py'
  adding 'AdaptivePELE/analysis/bestStructs.py'
  adding 'AdaptivePELE/analysis/calculateSASAvalues.py'
  adding 'AdaptivePELE/analysis/clusterAdaptiveRun.py'
  adding 'AdaptivePELE/analysis/compareClustering.py'
  adding 'AdaptivePELE/analysis/convertTrajectory.py'
  adding 'AdaptivePELE/analysis/correctRMSD.py'
  adding 'AdaptivePELE/analysis/count_clusters.py'
  adding 'AdaptivePELE/analysis/dehidratate_and_align.py'
  adding 'AdaptivePELE/analysis/extract_ligand_traj.py'
  adding 'AdaptivePELE/analysis/filter_by_radius.py'
  adding 'AdaptivePELE/analysis/findfirstbindingevent.py'
  adding 'AdaptivePELE/analysis/foldersFirstBindingEvent.py'
  adding 'AdaptivePELE/analysis/histCM.py'
  adding 'AdaptivePELE/analysis/identifyClusterSnapshot.py'
  adding 'AdaptivePELE/analysis/interactivePlot.py'
  adding 'AdaptivePELE/analysis/makePNGs.py'
  adding 'AdaptivePELE/analysis/networkCM.py'
  adding 'AdaptivePELE/analysis/numberOfClusters.py'
  adding 'AdaptivePELE/analysis/pathwayRMSD.py'
  adding 'AdaptivePELE/analysis/plot3DNetwork.py'
  adding 'AdaptivePELE/analysis/plotAdaptive.py'
  adding 'AdaptivePELE/analysis/plotRMSF.py'
  adding 'AdaptivePELE/analysis/plotSpawningClusters.py'
  adding 'AdaptivePELE/analysis/splitTrajectory.py'
  adding 'AdaptivePELE/analysis/trajectory_processing.py'
  adding 'AdaptivePELE/analysis/writeClusteringStructures.py'
  adding 'AdaptivePELE/analysis/writeNetworkFiles.py'
  adding 'AdaptivePELE/analysis/writeTrajToSnapshot.py'
  adding 'AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so'
  adding 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so'
  adding 'AdaptivePELE/atomset/__init__.py'
  adding 'AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so'
  adding 'AdaptivePELE/atomset/setup.py'
  adding 'AdaptivePELE/clustering/__init__.py'
  adding 'AdaptivePELE/clustering/clustering.py'
  adding 'AdaptivePELE/clustering/clusteringTypes.py'
  adding 'AdaptivePELE/clustering/thresholdcalculator.py'
  adding 'AdaptivePELE/clustering/thresholdcalculatortypes.py'
  adding 'AdaptivePELE/constants/__init__.py'
  adding 'AdaptivePELE/constants/blockNames.py'
  adding 'AdaptivePELE/constants/constants.py'
  adding 'AdaptivePELE/constants/symmetries.py'
  adding 'AdaptivePELE/freeEnergies/__init__.py'
  adding 'AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py'
  adding 'AdaptivePELE/freeEnergies/calculateDGiterations.py'
  adding 'AdaptivePELE/freeEnergies/checkDetailedBalance.py'
  adding 'AdaptivePELE/freeEnergies/cluster.py'
  adding 'AdaptivePELE/freeEnergies/computeDGGrid.py'
  adding 'AdaptivePELE/freeEnergies/computeDeltaG.py'
  adding 'AdaptivePELE/freeEnergies/estimate.py'
  adding 'AdaptivePELE/freeEnergies/estimateDG.py'
  adding 'AdaptivePELE/freeEnergies/estimateDGAdaptive.py'
  adding 'AdaptivePELE/freeEnergies/extendTrajectories.py'
  adding 'AdaptivePELE/freeEnergies/extractCoords.py'
  adding 'AdaptivePELE/freeEnergies/getRepresentativeStructures.py'
  adding 'AdaptivePELE/freeEnergies/ownBuildMSM.py'
  adding 'AdaptivePELE/freeEnergies/prepareMSMFolders.py'
  adding 'AdaptivePELE/freeEnergies/runMarkovChainModel.py'
  adding 'AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so'
  adding 'AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py'
  adding 'AdaptivePELE/simulation/__init__.py'
  adding 'AdaptivePELE/simulation/openmm_simulations.py'
  adding 'AdaptivePELE/simulation/simulationTypes.py'
  adding 'AdaptivePELE/simulation/simulationrunner.py'
  adding 'AdaptivePELE/spawning/__init__.py'
  adding 'AdaptivePELE/spawning/densitycalculator.py'
  adding 'AdaptivePELE/spawning/densitycalculatortypes.py'
  adding 'AdaptivePELE/spawning/spawning.py'
  adding 'AdaptivePELE/spawning/spawningTypes.py'
  adding 'AdaptivePELE/tests/__init__.py'
  adding 'AdaptivePELE/tests/testAdaptiveSampling.py'
  adding 'AdaptivePELE/tests/testAtomset.py'
  adding 'AdaptivePELE/tests/testClustering.py'
  adding 'AdaptivePELE/tests/testDensityCalculator.py'
  adding 'AdaptivePELE/tests/testMD.py'
  adding 'AdaptivePELE/tests/testMD_CUDA.py'
  adding 'AdaptivePELE/tests/testReporter.py'
  adding 'AdaptivePELE/tests/testSpawning.py'
  adding 'AdaptivePELE/tests/testThresholdcalculator.py'
  adding 'AdaptivePELE/utilities/PDBLoader.py'
  adding 'AdaptivePELE/utilities/__init__.py'
  adding 'AdaptivePELE/utilities/clusteringUtilities.py'
  adding 'AdaptivePELE/utilities/synchronization.py'
  adding 'AdaptivePELE/utilities/utilities.py'
  adding 'AdaptivePELE/validator/__init__.py'
  adding 'AdaptivePELE/validator/controlFileValidator.py'
  adding 'AdaptivePELE/validator/validatorBlockNames.py'
  adding 'AdaptivePELE-1.6.dist-info/METADATA'
  adding 'AdaptivePELE-1.6.dist-info/WHEEL'
  adding 'AdaptivePELE-1.6.dist-info/top_level.txt'
  adding 'AdaptivePELE-1.6.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for AdaptivePELE: finished with status 'done'
  Stored in directory: /tmp/tmpyzqp4a9w
Successfully built AdaptivePELE
Cleaning up...
  Removing source in /tmp/pip-wheel-h6scd4em/AdaptivePELE
Removed build tracker '/tmp/pip-req-tracker-_48cyfvx'