2019-06-27T02:05:56 Created temporary directory: /tmp/pip-ephem-wheel-cache-fr8y7tpc
2019-06-27T02:05:56 Created temporary directory: /tmp/pip-req-tracker-8apzd9e0
2019-06-27T02:05:56 Created requirements tracker '/tmp/pip-req-tracker-8apzd9e0'
2019-06-27T02:05:56 Created temporary directory: /tmp/pip-wheel-uzi60eov
2019-06-27T02:05:56 Collecting ssbio==0.9.9.8a0
2019-06-27T02:05:56   1 location(s) to search for versions of ssbio:
2019-06-27T02:05:56   * https://pypi.org/simple/ssbio/
2019-06-27T02:05:56   Getting page https://pypi.org/simple/ssbio/
2019-06-27T02:05:56   Analyzing links from page https://pypi.org/simple/ssbio/
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/19/84/95d3a57225131be3264c54c59ed535d4e3835096a2b02a208c23b27bb908/ssbio-0.9.0.tar.gz#sha256=cc678d0d4f2eb77477d7bc5dce970da4d583257df2d9ce3823b25c63b9b00c03 (from https://pypi.org/simple/ssbio/), version: 0.9.0
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/39/75/65a2dd3565e032480d6d4f41279113df1ea77db6f68d5d49e0e39337fb58/ssbio-0.9.1.tar.gz#sha256=6eb6a534e237e1fa48a38f8ca4c519908579e2564153bc07c8e470599a8f1fa6 (from https://pypi.org/simple/ssbio/), version: 0.9.1
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/2a/e9/0442b708594aa9805825eeb309403e02dd000b01c21fdb5e6443c34f7c41/ssbio-0.9.2.tar.gz#sha256=8568ea1ce036cf53e4e002ae55e93f0e92d090b2276e65e2afcb99377722010a (from https://pypi.org/simple/ssbio/), version: 0.9.2
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/1c/96/681aa00b0bd16d6e144a2361a10cf7441fb9d2f14c5196b9317ac379e714/ssbio-0.9.3.tar.gz#sha256=de129da7ce324059de1629d7ffb8df0552dd9a7427555756d10e80ddc1ca1812 (from https://pypi.org/simple/ssbio/), version: 0.9.3
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/90/3a/50920cd9fe8b6c84c5957fe9e6bfac53fe9019b4764a2937873be96fee15/ssbio-0.9.4.tar.gz#sha256=963e0cc15904942a0ac5188ddad2a45ff802495d41a4efd810d5b187bbf7e30c (from https://pypi.org/simple/ssbio/), version: 0.9.4
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/46/20/da2d087f681025311ef22b5ca86da051ffff22f3d983b9b7b236ad8b6205/ssbio-0.9.5.tar.gz#sha256=b4c2f8488920dc3881e0a4bb27e975b90fbe5761f101261a5ce995ae5641e566 (from https://pypi.org/simple/ssbio/), version: 0.9.5
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/f0/7e/1e66ffeec58a01a31a12b1c09a3ac139c5c0121d8747b48da7cfb3eafd7e/ssbio-0.9.6.tar.gz#sha256=eec1ce6bcb5d3e2ca17a8c108dbfd71eb208a3bd88f8536b15410f6fb405135e (from https://pypi.org/simple/ssbio/), version: 0.9.6
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/b8/c5/334ecd5f7ce16371f5c0f65c0b9de87b77c1ad779e94da6e6ace6eb7e89d/ssbio-0.9.7.tar.gz#sha256=5a83136de36977df732eea07093de5063ff1990c949e62e5a6a0e4542f752d05 (from https://pypi.org/simple/ssbio/), version: 0.9.7
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/d2/f8/8b769a6d8f83f2c2e753efd9e75d46698e598471acadbe131ea0145386ab/ssbio-0.9.8.tar.gz#sha256=7fdf836525302066dc85b78a10fc33139e6e26f61360b01f177d40b4581a87ab (from https://pypi.org/simple/ssbio/), version: 0.9.8
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/97/74/79082930fdc8eaa8fc0650008681a512fcdfc38742aa0549c7cb80e64614/ssbio-0.9.8.1.tar.gz#sha256=bd485c7fa0fe9ac65be5f4a3663037541f9857d6ef34e82f964ea9c4032c7485 (from https://pypi.org/simple/ssbio/), version: 0.9.8.1
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/c9/d1/f4d5d5705d768da479539d8761486d7f5ccac1eeb135292cfe736da893e8/ssbio-0.9.9.tar.gz#sha256=d50ffc12df3a58e4ddb15ffebde6a569c92b1b6f0ff3c2ff5e59b6dd27d7dd9e (from https://pypi.org/simple/ssbio/), version: 0.9.9
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/94/dc/124b64ce3686eb5f0189716fcbcaa83e4ad8a0a4c5a37b144260413d381d/ssbio-0.9.9.1.tar.gz#sha256=d3034e4331c670b55d75cabec679c59b31e91f1892f4228f634311677806447b (from https://pypi.org/simple/ssbio/), version: 0.9.9.1
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/82/da/7f94d130161b3151f8b443c92246def723dd410c8c3ce0d97c0c71b7fa08/ssbio-0.9.9.2.tar.gz#sha256=efa29a5556d9de85328f8744e30024f4553728b5ae7cd6968afb018e73f53d4a (from https://pypi.org/simple/ssbio/), version: 0.9.9.2
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/99/46/83755de5c913d14385aba12e47c105925c5b86ec83e06a663694a64e70ac/ssbio-0.9.9.3.tar.gz#sha256=60831ca413eaefdf3feafd48c8fb01f364fc2589e94692cb917b94031639ac43 (from https://pypi.org/simple/ssbio/), version: 0.9.9.3
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/fd/f1/34fe1bd15df66c5f11673cea79473cf1e72bd053f1784573411f5f17c15a/ssbio-0.9.9.4.tar.gz#sha256=2245461c98f6690ff1032400dd8cff2579b2e326b7a6fc8e41e16de560423d80 (from https://pypi.org/simple/ssbio/), version: 0.9.9.4
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/e2/34/7baa850dcf73a6f7b23b53996686e350a37ca87e2748408c940da2a8643f/ssbio-0.9.9.5.tar.gz#sha256=043dcf740f46ca1ed3486e84f9ee8f5fa14b6bc424af3b03e1d8c7ea5ef7bc4a (from https://pypi.org/simple/ssbio/), version: 0.9.9.5
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/83/c7/d4b5e853c65e6cc5ef46d450525d997ee521e84ea41023c8487bef5b1f39/ssbio-0.9.9.6.tar.gz#sha256=19cf546cdbf8363f53f54dec0469fcab40f89af5d9f848a04d9c2d3cfe3516fc (from https://pypi.org/simple/ssbio/), version: 0.9.9.6
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/30/90/b5ba8639e2c0e6ab06ad9f45965307c1b653b0129cde73b3486d24f1f446/ssbio-0.9.9.8a0.tar.gz#sha256=2677ade7009adede156820d13297d3797762839643cb2742e662da216e62cd47 (from https://pypi.org/simple/ssbio/), version: 0.9.9.8a0
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/8d/31/6ad40347358b16846e2c91c67317c960954aa156ddf12bfe9937f3893949/ssbio-0.9.9.8.tar.gz#sha256=8542a9268de880bc1818a34b7368e1a5e67ee5ccfb2dc4282e8f5f24bcfc3a8c (from https://pypi.org/simple/ssbio/), version: 0.9.9.8
2019-06-27T02:05:57     Found link https://files.pythonhosted.org/packages/ed/bb/bc7d3774c5de0f20856f148201f102d407b4d6b164ee74aa3a86f8aed89b/ssbio-0.9.9.8.post1.tar.gz#sha256=967e98bc75f1052506f9b7d2d3638bfdf3b3a278380d80761a2d78c0a82d4e3a (from https://pypi.org/simple/ssbio/), version: 0.9.9.8.post1
2019-06-27T02:05:57   Using version 0.9.9.8a0 (newest of versions: 0.9.9.8a0)
2019-06-27T02:05:57   Created temporary directory: /tmp/pip-unpack-m2krcnpl
2019-06-27T02:05:57   Downloading https://files.pythonhosted.org/packages/30/90/b5ba8639e2c0e6ab06ad9f45965307c1b653b0129cde73b3486d24f1f446/ssbio-0.9.9.8a0.tar.gz (221kB)
2019-06-27T02:05:57   Downloading from URL https://files.pythonhosted.org/packages/30/90/b5ba8639e2c0e6ab06ad9f45965307c1b653b0129cde73b3486d24f1f446/ssbio-0.9.9.8a0.tar.gz#sha256=2677ade7009adede156820d13297d3797762839643cb2742e662da216e62cd47 (from https://pypi.org/simple/ssbio/)
2019-06-27T02:05:57   Added ssbio==0.9.9.8a0 from https://files.pythonhosted.org/packages/30/90/b5ba8639e2c0e6ab06ad9f45965307c1b653b0129cde73b3486d24f1f446/ssbio-0.9.9.8a0.tar.gz#sha256=2677ade7009adede156820d13297d3797762839643cb2742e662da216e62cd47 to build tracker '/tmp/pip-req-tracker-8apzd9e0'
2019-06-27T02:05:58     Running setup.py (path:/tmp/pip-wheel-uzi60eov/ssbio/setup.py) egg_info for package ssbio
2019-06-27T02:05:58     Running command python setup.py egg_info
2019-06-27T02:06:00     running egg_info
2019-06-27T02:06:00     creating pip-egg-info/ssbio.egg-info
2019-06-27T02:06:00     writing dependency_links to pip-egg-info/ssbio.egg-info/dependency_links.txt
2019-06-27T02:06:00     writing requirements to pip-egg-info/ssbio.egg-info/requires.txt
2019-06-27T02:06:00     writing pip-egg-info/ssbio.egg-info/PKG-INFO
2019-06-27T02:06:00     writing top-level names to pip-egg-info/ssbio.egg-info/top_level.txt
2019-06-27T02:06:00     writing manifest file 'pip-egg-info/ssbio.egg-info/SOURCES.txt'
2019-06-27T02:06:01     reading manifest file 'pip-egg-info/ssbio.egg-info/SOURCES.txt'
2019-06-27T02:06:01     reading manifest template 'MANIFEST.in'
2019-06-27T02:06:01     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing '0.9.9.8a' to '0.9.9.8a0'
2019-06-27T02:06:01       normalized_version,
2019-06-27T02:06:01     warning: no files found matching 'README.md'
2019-06-27T02:06:01     writing manifest file 'pip-egg-info/ssbio.egg-info/SOURCES.txt'
2019-06-27T02:06:01   Source in /tmp/pip-wheel-uzi60eov/ssbio has version 0.9.9.8a0, which satisfies requirement ssbio==0.9.9.8a0 from https://files.pythonhosted.org/packages/30/90/b5ba8639e2c0e6ab06ad9f45965307c1b653b0129cde73b3486d24f1f446/ssbio-0.9.9.8a0.tar.gz#sha256=2677ade7009adede156820d13297d3797762839643cb2742e662da216e62cd47
2019-06-27T02:06:01   Removed ssbio==0.9.9.8a0 from https://files.pythonhosted.org/packages/30/90/b5ba8639e2c0e6ab06ad9f45965307c1b653b0129cde73b3486d24f1f446/ssbio-0.9.9.8a0.tar.gz#sha256=2677ade7009adede156820d13297d3797762839643cb2742e662da216e62cd47 from build tracker '/tmp/pip-req-tracker-8apzd9e0'
2019-06-27T02:06:01 Building wheels for collected packages: ssbio
2019-06-27T02:06:01   Created temporary directory: /tmp/pip-wheel-p56mdkgj
2019-06-27T02:06:01   Building wheel for ssbio (setup.py): started
2019-06-27T02:06:01   Destination directory: /tmp/pip-wheel-p56mdkgj
2019-06-27T02:06:01   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-uzi60eov/ssbio/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-p56mdkgj
2019-06-27T02:06:03   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing '0.9.9.8a' to '0.9.9.8a0'
2019-06-27T02:06:03     normalized_version,
2019-06-27T02:06:03   running bdist_wheel
2019-06-27T02:06:03   running build
2019-06-27T02:06:03   running build_py
2019-06-27T02:06:03   creating build
2019-06-27T02:06:03   creating build/lib
2019-06-27T02:06:03   creating build/lib/ssbio
2019-06-27T02:06:03   copying ssbio/utils.py -> build/lib/ssbio
2019-06-27T02:06:03   copying ssbio/__init__.py -> build/lib/ssbio
2019-06-27T02:06:03   creating build/lib/ssbio/protein
2019-06-27T02:06:03   copying ssbio/protein/__init__.py -> build/lib/ssbio/protein
2019-06-27T02:06:03   creating build/lib/ssbio/io
2019-06-27T02:06:03   copying ssbio/io/__init__.py -> build/lib/ssbio/io
2019-06-27T02:06:03   copying ssbio/io/validation.py -> build/lib/ssbio/io
2019-06-27T02:06:03   creating build/lib/ssbio/pipeline
2019-06-27T02:06:03   copying ssbio/pipeline/atlas2.py -> build/lib/ssbio/pipeline
2019-06-27T02:06:03   copying ssbio/pipeline/__init__.py -> build/lib/ssbio/pipeline
2019-06-27T02:06:03   copying ssbio/pipeline/atlas.py -> build/lib/ssbio/pipeline
2019-06-27T02:06:03   copying ssbio/pipeline/gempro.py -> build/lib/ssbio/pipeline
2019-06-27T02:06:04   copying ssbio/pipeline/atlas3.py -> build/lib/ssbio/pipeline
2019-06-27T02:06:04   creating build/lib/ssbio/biopython
2019-06-27T02:06:04   copying ssbio/biopython/__init__.py -> build/lib/ssbio/biopython
2019-06-27T02:06:04   copying ssbio/biopython/bp_mmcifparser.py -> build/lib/ssbio/biopython
2019-06-27T02:06:04   copying ssbio/biopython/bp_mmcif2dict.py -> build/lib/ssbio/biopython
2019-06-27T02:06:04   creating build/lib/ssbio/complex
2019-06-27T02:06:04   copying ssbio/complex/__init__.py -> build/lib/ssbio/complex
2019-06-27T02:06:04   copying ssbio/complex/oligomer.py -> build/lib/ssbio/complex
2019-06-27T02:06:04   copying ssbio/complex/bioassembly.py -> build/lib/ssbio/complex
2019-06-27T02:06:04   creating build/lib/ssbio/viz
2019-06-27T02:06:04   copying ssbio/viz/nglview.py -> build/lib/ssbio/viz
2019-06-27T02:06:04   copying ssbio/viz/__init__.py -> build/lib/ssbio/viz
2019-06-27T02:06:04   copying ssbio/viz/color.py -> build/lib/ssbio/viz
2019-06-27T02:06:04   creating build/lib/ssbio/core
2019-06-27T02:06:04   copying ssbio/core/object.py -> build/lib/ssbio/core
2019-06-27T02:06:04   copying ssbio/core/protein.py -> build/lib/ssbio/core
2019-06-27T02:06:04   copying ssbio/core/__init__.py -> build/lib/ssbio/core
2019-06-27T02:06:04   copying ssbio/core/modelpro.py -> build/lib/ssbio/core
2019-06-27T02:06:04   copying ssbio/core/genepro.py -> build/lib/ssbio/core
2019-06-27T02:06:04   copying ssbio/core/complex.py -> build/lib/ssbio/core
2019-06-27T02:06:04   creating build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_core_genepro.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_sequence_properties_thermostability.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_databases_pdb.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_databases_uniprot.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_pipeline_gempro.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/__init__.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_structure_homology_itasserparse.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_seqprop.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_structure_utils_mutatepdb.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_pipeline_atlas.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_sequence_properties_scratch.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_databases_bigg.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_structure_properties_fatcat.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_core_protein.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_sequence_utils_fasta.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_databases_kegg.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_sequence_utils_alignment.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/conftest.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_protein_structure_utils_cleanpdb.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_utils.py -> build/lib/ssbio/test
2019-06-27T02:06:04   copying ssbio/test/test_core_object.py -> build/lib/ssbio/test
2019-06-27T02:06:04   creating build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/pdb.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/metalpdb.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/uniprot.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/__init__.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/swissmodel.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/kegg.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/ncbi.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/pisa.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/patric.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/pdbflex.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/pdb_seq.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/bigg.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   copying ssbio/databases/hmmer.py -> build/lib/ssbio/databases
2019-06-27T02:06:04   creating build/lib/ssbio/protein/sequence
2019-06-27T02:06:04   copying ssbio/protein/sequence/__init__.py -> build/lib/ssbio/protein/sequence
2019-06-27T02:06:04   copying ssbio/protein/sequence/seqprop.py -> build/lib/ssbio/protein/sequence
2019-06-27T02:06:04   creating build/lib/ssbio/protein/structure
2019-06-27T02:06:04   copying ssbio/protein/structure/__init__.py -> build/lib/ssbio/protein/structure
2019-06-27T02:06:04   copying ssbio/protein/structure/structprop.py -> build/lib/ssbio/protein/structure
2019-06-27T02:06:04   copying ssbio/protein/structure/chainprop.py -> build/lib/ssbio/protein/structure
2019-06-27T02:06:04   creating build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/kinetic_folding_rate.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/thermostability.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/__init__.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/cctop.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/residues.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/aggregation_propensity.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/scratch.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying ssbio/protein/sequence/properties/tmhmm.py -> build/lib/ssbio/protein/sequence/properties
2019-06-27T02:06:04   creating build/lib/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying ssbio/protein/sequence/utils/utils.py -> build/lib/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying ssbio/protein/sequence/utils/fasta.py -> build/lib/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying ssbio/protein/sequence/utils/__init__.py -> build/lib/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying ssbio/protein/sequence/utils/blast.py -> build/lib/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying ssbio/protein/sequence/utils/alignment.py -> build/lib/ssbio/protein/sequence/utils
2019-06-27T02:06:04   creating build/lib/ssbio/protein/structure/homology
2019-06-27T02:06:04   copying ssbio/protein/structure/homology/__init__.py -> build/lib/ssbio/protein/structure/homology
2019-06-27T02:06:04   creating build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/quality.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/dssp.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/fatcat.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/__init__.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/residues.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/stride.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/opm.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/freesasa.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying ssbio/protein/structure/properties/msms.py -> build/lib/ssbio/protein/structure/properties
2019-06-27T02:06:04   creating build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/mutatepdb.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/tleap.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/__init__.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/dock.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/cleanpdb.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/structureio.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying ssbio/protein/structure/utils/foldx.py -> build/lib/ssbio/protein/structure/utils
2019-06-27T02:06:04   creating build/lib/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying ssbio/protein/structure/homology/itasser/__init__.py -> build/lib/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying ssbio/protein/structure/homology/itasser/itasserprep.py -> build/lib/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying ssbio/protein/structure/homology/itasser/itasserprop.py -> build/lib/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   installing to build/bdist.linux-armv7l/wheel
2019-06-27T02:06:04   running install
2019-06-27T02:06:04   running install_lib
2019-06-27T02:06:04   creating build/bdist.linux-armv7l
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/sequence
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/kinetic_folding_rate.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/thermostability.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/cctop.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/residues.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/aggregation_propensity.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/scratch.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/properties/tmhmm.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/properties
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/utils/utils.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/utils/fasta.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/utils/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/utils/blast.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/utils/alignment.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/sequence/seqprop.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/sequence
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/structure
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/structure/homology
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/homology/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/homology
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/homology/itasser/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/homology/itasser/itasserprep.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/homology/itasser/itasserprop.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/homology/itasser
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/quality.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/dssp.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/fatcat.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/residues.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/stride.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/opm.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/freesasa.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/properties/msms.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/properties
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/mutatepdb.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/tleap.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/dock.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/cleanpdb.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/structureio.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/utils/foldx.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure/utils
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/structprop.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure
2019-06-27T02:06:04   copying build/lib/ssbio/protein/structure/chainprop.py -> build/bdist.linux-armv7l/wheel/ssbio/protein/structure
2019-06-27T02:06:04   copying build/lib/ssbio/protein/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/protein
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/io
2019-06-27T02:06:04   copying build/lib/ssbio/io/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/io
2019-06-27T02:06:04   copying build/lib/ssbio/io/validation.py -> build/bdist.linux-armv7l/wheel/ssbio/io
2019-06-27T02:06:04   copying build/lib/ssbio/utils.py -> build/bdist.linux-armv7l/wheel/ssbio
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/pipeline
2019-06-27T02:06:04   copying build/lib/ssbio/pipeline/atlas2.py -> build/bdist.linux-armv7l/wheel/ssbio/pipeline
2019-06-27T02:06:04   copying build/lib/ssbio/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/pipeline
2019-06-27T02:06:04   copying build/lib/ssbio/pipeline/atlas.py -> build/bdist.linux-armv7l/wheel/ssbio/pipeline
2019-06-27T02:06:04   copying build/lib/ssbio/pipeline/gempro.py -> build/bdist.linux-armv7l/wheel/ssbio/pipeline
2019-06-27T02:06:04   copying build/lib/ssbio/pipeline/atlas3.py -> build/bdist.linux-armv7l/wheel/ssbio/pipeline
2019-06-27T02:06:04   copying build/lib/ssbio/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/biopython
2019-06-27T02:06:04   copying build/lib/ssbio/biopython/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/biopython
2019-06-27T02:06:04   copying build/lib/ssbio/biopython/bp_mmcifparser.py -> build/bdist.linux-armv7l/wheel/ssbio/biopython
2019-06-27T02:06:04   copying build/lib/ssbio/biopython/bp_mmcif2dict.py -> build/bdist.linux-armv7l/wheel/ssbio/biopython
2019-06-27T02:06:04   creating build/bdist.linux-armv7l/wheel/ssbio/complex
2019-06-27T02:06:04   copying build/lib/ssbio/complex/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/complex
2019-06-27T02:06:04   copying build/lib/ssbio/complex/oligomer.py -> build/bdist.linux-armv7l/wheel/ssbio/complex
2019-06-27T02:06:05   copying build/lib/ssbio/complex/bioassembly.py -> build/bdist.linux-armv7l/wheel/ssbio/complex
2019-06-27T02:06:05   creating build/bdist.linux-armv7l/wheel/ssbio/viz
2019-06-27T02:06:05   copying build/lib/ssbio/viz/nglview.py -> build/bdist.linux-armv7l/wheel/ssbio/viz
2019-06-27T02:06:05   copying build/lib/ssbio/viz/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/viz
2019-06-27T02:06:05   copying build/lib/ssbio/viz/color.py -> build/bdist.linux-armv7l/wheel/ssbio/viz
2019-06-27T02:06:05   creating build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   copying build/lib/ssbio/core/object.py -> build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   copying build/lib/ssbio/core/protein.py -> build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   copying build/lib/ssbio/core/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   copying build/lib/ssbio/core/modelpro.py -> build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   copying build/lib/ssbio/core/genepro.py -> build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   copying build/lib/ssbio/core/complex.py -> build/bdist.linux-armv7l/wheel/ssbio/core
2019-06-27T02:06:05   creating build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_core_genepro.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_sequence_properties_thermostability.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_databases_pdb.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_databases_uniprot.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_pipeline_gempro.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_structure_homology_itasserparse.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_seqprop.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_structure_utils_mutatepdb.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_pipeline_atlas.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_sequence_properties_scratch.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_databases_bigg.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_structure_properties_fatcat.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_core_protein.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_sequence_utils_fasta.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_databases_kegg.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_sequence_utils_alignment.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/conftest.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_protein_structure_utils_cleanpdb.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_utils.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   copying build/lib/ssbio/test/test_core_object.py -> build/bdist.linux-armv7l/wheel/ssbio/test
2019-06-27T02:06:05   creating build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/pdb.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/metalpdb.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/uniprot.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/__init__.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/swissmodel.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/kegg.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/ncbi.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/pisa.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/patric.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/pdbflex.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/pdb_seq.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/bigg.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   copying build/lib/ssbio/databases/hmmer.py -> build/bdist.linux-armv7l/wheel/ssbio/databases
2019-06-27T02:06:05   running install_egg_info
2019-06-27T02:06:05   running egg_info
2019-06-27T02:06:05   writing ssbio.egg-info/PKG-INFO
2019-06-27T02:06:05   writing requirements to ssbio.egg-info/requires.txt
2019-06-27T02:06:05   writing dependency_links to ssbio.egg-info/dependency_links.txt
2019-06-27T02:06:05   writing top-level names to ssbio.egg-info/top_level.txt
2019-06-27T02:06:05   reading manifest file 'ssbio.egg-info/SOURCES.txt'
2019-06-27T02:06:05   reading manifest template 'MANIFEST.in'
2019-06-27T02:06:05   warning: no files found matching 'README.md'
2019-06-27T02:06:05   writing manifest file 'ssbio.egg-info/SOURCES.txt'
2019-06-27T02:06:05   Copying ssbio.egg-info to build/bdist.linux-armv7l/wheel/ssbio-0.9.9.8a0-py3.5.egg-info
2019-06-27T02:06:05   running install_scripts
2019-06-27T02:06:05   creating build/bdist.linux-armv7l/wheel/ssbio-0.9.9.8a0.dist-info/WHEEL
2019-06-27T02:06:06   Building wheel for ssbio (setup.py): finished with status 'done'
2019-06-27T02:06:06   Stored in directory: /tmp/tmp009me9cu
2019-06-27T02:06:06 Successfully built ssbio
2019-06-27T02:06:06 Cleaning up...
2019-06-27T02:06:06   Removing source in /tmp/pip-wheel-uzi60eov/ssbio
2019-06-27T02:06:06 Removed build tracker '/tmp/pip-req-tracker-8apzd9e0'