2019-06-27T16:07:43 Created temporary directory: /tmp/pip-ephem-wheel-cache-9df3faqd 2019-06-27T16:07:43 Created temporary directory: /tmp/pip-req-tracker-zmx0ph30 2019-06-27T16:07:43 Created requirements tracker '/tmp/pip-req-tracker-zmx0ph30' 2019-06-27T16:07:43 Created temporary directory: /tmp/pip-wheel-68g9djme 2019-06-27T16:07:43 Collecting nwalign==0.1.2 2019-06-27T16:07:43 1 location(s) to search for versions of nwalign: 2019-06-27T16:07:43 * https://pypi.org/simple/nwalign/ 2019-06-27T16:07:43 Getting page https://pypi.org/simple/nwalign/ 2019-06-27T16:07:43 Analyzing links from page https://pypi.org/simple/nwalign/ 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/c8/26/9ca7ef2ddd1680a8a56c8b9c04f0b97f6c5a4b1fdd32f4795022317823a8/nwalign-0.1.tar.gz#sha256=4faa5fa9e60b19bee52adbf0a511b970bd29ad01d91112088c468c0bd58085cd (from https://pypi.org/simple/nwalign/), version: 0.1 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/a1/c8/1e9a68782c95d700d695c8b1f3a8934e1072e8ed60491e430896b834f961/nwalign-0.1.1.tar.gz#sha256=6fad7673d67932c0c670f564f8d9c8c7af264c7300c8038a245014a9d62b50dd (from https://pypi.org/simple/nwalign/), version: 0.1.1 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 (from https://pypi.org/simple/nwalign/), version: 0.1.2 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz#sha256=4fa6ca37c80650269e58437c4ac7969fa69ef7929ecfff279f6529e9f3a86fd9 (from https://pypi.org/simple/nwalign/), version: 0.1.3 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz#sha256=c0984d30a9e7b95ceffda4265c8c2f4faf3ebf41ade008744df870bfa83c0b18 (from https://pypi.org/simple/nwalign/), version: 0.2 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz#sha256=8bd5786ad2d43282e5f5163f298cb232a7a154769398189a130eb34e61adc952 (from https://pypi.org/simple/nwalign/), version: 0.3.0 2019-06-27T16:07:44 Found link https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781 (from https://pypi.org/simple/nwalign/), version: 0.3.1 2019-06-27T16:07:44 Using version 0.1.2 (newest of versions: 0.1.2) 2019-06-27T16:07:44 Created temporary directory: /tmp/pip-unpack-st763for 2019-06-27T16:07:44 Downloading https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz (42kB) 2019-06-27T16:07:44 Downloading from URL https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 (from https://pypi.org/simple/nwalign/) 2019-06-27T16:07:44 Added nwalign==0.1.2 from https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 to build tracker '/tmp/pip-req-tracker-zmx0ph30' 2019-06-27T16:07:44 Running setup.py (path:/tmp/pip-wheel-68g9djme/nwalign/setup.py) egg_info for package nwalign 2019-06-27T16:07:44 Running command python setup.py egg_info 2019-06-27T16:07:46 running egg_info 2019-06-27T16:07:46 creating pip-egg-info/nwalign.egg-info 2019-06-27T16:07:46 writing pip-egg-info/nwalign.egg-info/PKG-INFO 2019-06-27T16:07:46 writing dependency_links to pip-egg-info/nwalign.egg-info/dependency_links.txt 2019-06-27T16:07:46 writing entry points to pip-egg-info/nwalign.egg-info/entry_points.txt 2019-06-27T16:07:46 writing requirements to pip-egg-info/nwalign.egg-info/requires.txt 2019-06-27T16:07:46 writing top-level names to pip-egg-info/nwalign.egg-info/top_level.txt 2019-06-27T16:07:46 writing manifest file 'pip-egg-info/nwalign.egg-info/SOURCES.txt' 2019-06-27T16:07:46 reading manifest file 'pip-egg-info/nwalign.egg-info/SOURCES.txt' 2019-06-27T16:07:46 writing manifest file 'pip-egg-info/nwalign.egg-info/SOURCES.txt' 2019-06-27T16:07:46 Source in /tmp/pip-wheel-68g9djme/nwalign has version 0.1.2, which satisfies requirement nwalign==0.1.2 from https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 2019-06-27T16:07:46 Removed nwalign==0.1.2 from https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 from build tracker '/tmp/pip-req-tracker-zmx0ph30' 2019-06-27T16:07:46 Building wheels for collected packages: nwalign 2019-06-27T16:07:46 Created temporary directory: /tmp/pip-wheel-sqo6qgds 2019-06-27T16:07:46 Building wheel for nwalign (setup.py): started 2019-06-27T16:07:46 Destination directory: /tmp/pip-wheel-sqo6qgds 2019-06-27T16:07:46 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-68g9djme/nwalign/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sqo6qgds 2019-06-27T16:07:48 running bdist_wheel 2019-06-27T16:07:48 running build 2019-06-27T16:07:48 running build_ext 2019-06-27T16:07:48 building 'nwalign' extension 2019-06-27T16:07:48 creating build 2019-06-27T16:07:48 creating build/temp.linux-armv7l-3.7 2019-06-27T16:07:48 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I. -I/usr/include/python3.7m -c nwalign.c -o build/temp.linux-armv7l-3.7/nwalign.o 2019-06-27T16:07:49 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-06-27T16:07:49 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-06-27T16:07:49 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-06-27T16:07:49 from nwalign.c:136: 2019-06-27T16:07:49 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-06-27T16:07:49 #warning "Using deprecated NumPy API, disable it with " \ 2019-06-27T16:07:49 ^~~~~~~ 2019-06-27T16:07:49 nwalign.c: In function ‘__pyx_pf_7nwalign_read_matrix’: 2019-06-27T16:07:49 nwalign.c:1046:14: warning: variable ‘__pyx_bshape_1_a’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_1_a = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1045:14: warning: variable ‘__pyx_bshape_0_a’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_0_a = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c: In function ‘__pyx_f_7nwalign_global_align’: 2019-06-27T16:07:49 nwalign.c:2507:26: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2019-06-27T16:07:49 __pyx_t_26 = PyString_FromStringAndSize((&__pyx_v_ci), ((size_t)1)); 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 PyBytes_FromStringAndSize 2019-06-27T16:07:49 nwalign.c:2507:24: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2019-06-27T16:07:49 __pyx_t_26 = PyString_FromStringAndSize((&__pyx_v_ci), ((size_t)1)); 2019-06-27T16:07:49 ^ 2019-06-27T16:07:49 nwalign.c:2572:24: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2019-06-27T16:07:49 __pyx_t_26 = PyString_FromStringAndSize((&__pyx_v_cj), ((size_t)1)); 2019-06-27T16:07:49 ^ 2019-06-27T16:07:49 nwalign.c:2904:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2019-06-27T16:07:49 __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2019-06-27T16:07:49 ^ 2019-06-27T16:07:49 nwalign.c:2913:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2019-06-27T16:07:49 __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2019-06-27T16:07:49 ^ 2019-06-27T16:07:49 nwalign.c:2922:21: warning: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2019-06-27T16:07:49 __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 PyBytes_AS_STRING 2019-06-27T16:07:49 nwalign.c:2922:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2019-06-27T16:07:49 __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2019-06-27T16:07:49 ^ 2019-06-27T16:07:49 nwalign.c:2931:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2019-06-27T16:07:49 __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2019-06-27T16:07:49 ^ 2019-06-27T16:07:49 nwalign.c:3135:3: warning: implicit declaration of function ‘_PyString_Resize’; did you mean ‘_PyTuple_Resize’? [-Wimplicit-function-declaration] 2019-06-27T16:07:49 _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 _PyTuple_Resize 2019-06-27T16:07:49 nwalign.c:1691:14: warning: variable ‘__pyx_bshape_1_agap’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_1_agap = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1690:14: warning: variable ‘__pyx_bshape_0_agap’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_0_agap = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1686:14: warning: variable ‘__pyx_bshape_1_score’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_1_score = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1685:14: warning: variable ‘__pyx_bshape_0_score’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_0_score = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1681:14: warning: variable ‘__pyx_bshape_1_pointer’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_1_pointer = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1680:14: warning: variable ‘__pyx_bshape_0_pointer’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_0_pointer = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1676:14: warning: variable ‘__pyx_bshape_1_amatrix’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_1_amatrix = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:1675:14: warning: variable ‘__pyx_bshape_0_amatrix’ set but not used [-Wunused-but-set-variable] 2019-06-27T16:07:49 Py_ssize_t __pyx_bshape_0_amatrix = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c: In function ‘__Pyx_ErrRestore’: 2019-06-27T16:07:49 nwalign.c:6146:18: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 if ((tstate->exc_type != NULL) & (tstate->exc_type != Py_None)) { 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6146:47: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 if ((tstate->exc_type != NULL) & (tstate->exc_type != Py_None)) { 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6147:28: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 tmp_type = tstate->exc_type; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6148:29: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 tmp_value = tstate->exc_value; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6149:26: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 tmp_tb = tstate->exc_traceback; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 nwalign.c:6152:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 tstate->exc_type = 0; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6153:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 tstate->exc_value = 0; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6154:17: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 tstate->exc_traceback = 0; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 nwalign.c: In function ‘__Pyx_GetException’: 2019-06-27T16:07:49 nwalign.c:6321:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 tmp_type = tstate->exc_type; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6322:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 tmp_value = tstate->exc_value; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6323:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 tmp_tb = tstate->exc_traceback; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 nwalign.c:6324:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 tstate->exc_type = *type; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6325:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 tstate->exc_value = *value; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6326:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 tstate->exc_traceback = *tb; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 nwalign.c: In function ‘__Pyx_ExceptionSave’: 2019-06-27T16:07:49 nwalign.c:6343:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 *type = tstate->exc_type; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6344:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 *value = tstate->exc_value; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6345:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 *tb = tstate->exc_traceback; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 nwalign.c: In function ‘__Pyx_ExceptionReset’: 2019-06-27T16:07:49 nwalign.c:6354:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 tmp_type = tstate->exc_type; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6355:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 tmp_value = tstate->exc_value; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6356:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 tmp_tb = tstate->exc_traceback; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 nwalign.c:6357:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-06-27T16:07:49 tstate->exc_type = type; 2019-06-27T16:07:49 ^~~~~~~~ 2019-06-27T16:07:49 curexc_type 2019-06-27T16:07:49 nwalign.c:6358:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-06-27T16:07:49 tstate->exc_value = value; 2019-06-27T16:07:49 ^~~~~~~~~ 2019-06-27T16:07:49 curexc_value 2019-06-27T16:07:49 nwalign.c:6359:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-06-27T16:07:49 tstate->exc_traceback = tb; 2019-06-27T16:07:49 ^~~~~~~~~~~~~ 2019-06-27T16:07:49 curexc_traceback 2019-06-27T16:07:49 At top level: 2019-06-27T16:07:49 nwalign.c:4598:13: warning: ‘__pyx_pf_5numpy_7ndarray___releasebuffer__’ defined but not used [-Wunused-function] 2019-06-27T16:07:49 static void __pyx_pf_5numpy_7ndarray___releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:3840:12: warning: ‘__pyx_pf_5numpy_7ndarray___getbuffer__’ defined but not used [-Wunused-function] 2019-06-27T16:07:49 static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { 2019-06-27T16:07:49 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:976:13: warning: ‘__pyx_k_27’ defined but not used [-Wunused-variable] 2019-06-27T16:07:49 static char __pyx_k_27[] = "<"; 2019-06-27T16:07:49 ^~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:975:13: warning: ‘__pyx_k_26’ defined but not used [-Wunused-variable] 2019-06-27T16:07:49 static char __pyx_k_26[] = ">"; 2019-06-27T16:07:49 ^~~~~~~~~~ 2019-06-27T16:07:49 nwalign.c:969:13: warning: ‘__pyx_k_24’ defined but not used [-Wunused-variable] 2019-06-27T16:07:49 static char __pyx_k_24[] = "^"; 2019-06-27T16:07:49 ^~~~~~~~~~ 2019-06-27T16:07:50 nwalign.c:949:13: warning: ‘__pyx_k_4’ defined but not used [-Wunused-variable] 2019-06-27T16:07:50 static char __pyx_k_4[] = "<"; 2019-06-27T16:07:50 ^~~~~~~~~ 2019-06-27T16:07:50 nwalign.c:948:13: warning: ‘__pyx_k_3’ defined but not used [-Wunused-variable] 2019-06-27T16:07:50 static char __pyx_k_3[] = ">"; 2019-06-27T16:07:50 ^~~~~~~~~ 2019-06-27T16:07:50 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2019-06-27T16:07:50 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-06-27T16:07:50 from nwalign.c:136: 2019-06-27T16:07:50 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2019-06-27T16:07:50 _import_array(void) 2019-06-27T16:07:50 ^~~~~~~~~~~~~ 2019-06-27T16:07:50 error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1 2019-06-27T16:07:50 Building wheel for nwalign (setup.py): finished with status 'error' 2019-06-27T16:07:50 ERROR: Failed building wheel for nwalign 2019-06-27T16:07:50 Running setup.py clean for nwalign 2019-06-27T16:07:50 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-68g9djme/nwalign/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2019-06-27T16:07:51 running clean 2019-06-27T16:07:51 removing 'build/temp.linux-armv7l-3.7' (and everything under it) 2019-06-27T16:07:51 'build/lib.linux-armv7l-3.7' does not exist -- can't clean it 2019-06-27T16:07:51 'build/bdist.linux-armv7l' does not exist -- can't clean it 2019-06-27T16:07:51 'build/scripts-3.7' does not exist -- can't clean it 2019-06-27T16:07:51 removing 'build' 2019-06-27T16:07:52 Failed to build nwalign 2019-06-27T16:07:52 Cleaning up... 2019-06-27T16:07:52 Removing source in /tmp/pip-wheel-68g9djme/nwalign 2019-06-27T16:07:52 Removed build tracker '/tmp/pip-req-tracker-zmx0ph30' 2019-06-27T16:07:52 ERROR: Failed to build one or more wheels 2019-06-27T16:07:52 Exception information: 2019-06-27T16:07:52 Traceback (most recent call last): 2019-06-27T16:07:52 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main 2019-06-27T16:07:52 status = self.run(options, args) 2019-06-27T16:07:52 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run 2019-06-27T16:07:52 "Failed to build one or more wheels" 2019-06-27T16:07:52 pip._internal.exceptions.CommandError: Failed to build one or more wheels