2019-06-27T19:00:26 Created temporary directory: /tmp/pip-ephem-wheel-cache-wp91m9eg
2019-06-27T19:00:26 Created temporary directory: /tmp/pip-req-tracker-pg83rghq
2019-06-27T19:00:26 Created requirements tracker '/tmp/pip-req-tracker-pg83rghq'
2019-06-27T19:00:26 Created temporary directory: /tmp/pip-wheel-h1w_ijb6
2019-06-27T19:00:26 Collecting nwalign==0.3.1
2019-06-27T19:00:26   1 location(s) to search for versions of nwalign:
2019-06-27T19:00:26   * https://pypi.org/simple/nwalign/
2019-06-27T19:00:26   Getting page https://pypi.org/simple/nwalign/
2019-06-27T19:00:26   Analyzing links from page https://pypi.org/simple/nwalign/
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/c8/26/9ca7ef2ddd1680a8a56c8b9c04f0b97f6c5a4b1fdd32f4795022317823a8/nwalign-0.1.tar.gz#sha256=4faa5fa9e60b19bee52adbf0a511b970bd29ad01d91112088c468c0bd58085cd (from https://pypi.org/simple/nwalign/), version: 0.1
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/a1/c8/1e9a68782c95d700d695c8b1f3a8934e1072e8ed60491e430896b834f961/nwalign-0.1.1.tar.gz#sha256=6fad7673d67932c0c670f564f8d9c8c7af264c7300c8038a245014a9d62b50dd (from https://pypi.org/simple/nwalign/), version: 0.1.1
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 (from https://pypi.org/simple/nwalign/), version: 0.1.2
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz#sha256=4fa6ca37c80650269e58437c4ac7969fa69ef7929ecfff279f6529e9f3a86fd9 (from https://pypi.org/simple/nwalign/), version: 0.1.3
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz#sha256=c0984d30a9e7b95ceffda4265c8c2f4faf3ebf41ade008744df870bfa83c0b18 (from https://pypi.org/simple/nwalign/), version: 0.2
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz#sha256=8bd5786ad2d43282e5f5163f298cb232a7a154769398189a130eb34e61adc952 (from https://pypi.org/simple/nwalign/), version: 0.3.0
2019-06-27T19:00:26     Found link https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781 (from https://pypi.org/simple/nwalign/), version: 0.3.1
2019-06-27T19:00:26   Using version 0.3.1 (newest of versions: 0.3.1)
2019-06-27T19:00:26   Created temporary directory: /tmp/pip-unpack-3ega6zrb
2019-06-27T19:00:26   Downloading https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz (50kB)
2019-06-27T19:00:26   Downloading from URL https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781 (from https://pypi.org/simple/nwalign/)
2019-06-27T19:00:26   Added nwalign==0.3.1 from https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781 to build tracker '/tmp/pip-req-tracker-pg83rghq'
2019-06-27T19:00:26     Running setup.py (path:/tmp/pip-wheel-h1w_ijb6/nwalign/setup.py) egg_info for package nwalign
2019-06-27T19:00:26     Running command python setup.py egg_info
2019-06-27T19:00:28     running egg_info
2019-06-27T19:00:28     creating pip-egg-info/nwalign.egg-info
2019-06-27T19:00:28     writing pip-egg-info/nwalign.egg-info/PKG-INFO
2019-06-27T19:00:28     writing dependency_links to pip-egg-info/nwalign.egg-info/dependency_links.txt
2019-06-27T19:00:28     writing entry points to pip-egg-info/nwalign.egg-info/entry_points.txt
2019-06-27T19:00:28     writing requirements to pip-egg-info/nwalign.egg-info/requires.txt
2019-06-27T19:00:28     writing top-level names to pip-egg-info/nwalign.egg-info/top_level.txt
2019-06-27T19:00:28     writing manifest file 'pip-egg-info/nwalign.egg-info/SOURCES.txt'
2019-06-27T19:00:29     reading manifest file 'pip-egg-info/nwalign.egg-info/SOURCES.txt'
2019-06-27T19:00:29     writing manifest file 'pip-egg-info/nwalign.egg-info/SOURCES.txt'
2019-06-27T19:00:29   Source in /tmp/pip-wheel-h1w_ijb6/nwalign has version 0.3.1, which satisfies requirement nwalign==0.3.1 from https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781
2019-06-27T19:00:29   Removed nwalign==0.3.1 from https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781 from build tracker '/tmp/pip-req-tracker-pg83rghq'
2019-06-27T19:00:29 Building wheels for collected packages: nwalign
2019-06-27T19:00:29   Created temporary directory: /tmp/pip-wheel-ket0q1yc
2019-06-27T19:00:29   Building wheel for nwalign (setup.py): started
2019-06-27T19:00:29   Destination directory: /tmp/pip-wheel-ket0q1yc
2019-06-27T19:00:29   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-h1w_ijb6/nwalign/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ket0q1yc
2019-06-27T19:00:31   running bdist_wheel
2019-06-27T19:00:31   running build
2019-06-27T19:00:31   running build_py
2019-06-27T19:00:31   creating build
2019-06-27T19:00:31   creating build/lib.linux-armv7l-3.7
2019-06-27T19:00:31   creating build/lib.linux-armv7l-3.7/nwalign
2019-06-27T19:00:31   copying nwalign/nwserver.py -> build/lib.linux-armv7l-3.7/nwalign
2019-06-27T19:00:31   copying nwalign/__init__.py -> build/lib.linux-armv7l-3.7/nwalign
2019-06-27T19:00:31   running egg_info
2019-06-27T19:00:31   writing nwalign.egg-info/PKG-INFO
2019-06-27T19:00:31   writing dependency_links to nwalign.egg-info/dependency_links.txt
2019-06-27T19:00:31   writing entry points to nwalign.egg-info/entry_points.txt
2019-06-27T19:00:31   writing requirements to nwalign.egg-info/requires.txt
2019-06-27T19:00:31   writing top-level names to nwalign.egg-info/top_level.txt
2019-06-27T19:00:32   reading manifest file 'nwalign.egg-info/SOURCES.txt'
2019-06-27T19:00:32   writing manifest file 'nwalign.egg-info/SOURCES.txt'
2019-06-27T19:00:32   copying nwalign/cnwalign.c -> build/lib.linux-armv7l-3.7/nwalign
2019-06-27T19:00:32   running build_ext
2019-06-27T19:00:32   building 'nwalign/cnwalign' extension
2019-06-27T19:00:32   creating build/temp.linux-armv7l-3.7
2019-06-27T19:00:32   creating build/temp.linux-armv7l-3.7/nwalign
2019-06-27T19:00:32   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -Inwalign -I/usr/include/python3.7m -c nwalign/cnwalign.c -o build/temp.linux-armv7l-3.7/nwalign/cnwalign.o
2019-06-27T19:00:33   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-06-27T19:00:33                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-06-27T19:00:33                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-06-27T19:00:33                    from nwalign/cnwalign.c:158:
2019-06-27T19:00:33   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-06-27T19:00:33    #warning "Using deprecated NumPy API, disable it with " \
2019-06-27T19:00:33     ^~~~~~~
2019-06-27T19:00:33   nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_read_matrix’:
2019-06-27T19:00:33   nwalign/cnwalign.c:1345:14: warning: variable ‘__pyx_bshape_1_a’ set but not used [-Wunused-but-set-variable]
2019-06-27T19:00:33      Py_ssize_t __pyx_bshape_1_a = 0;
2019-06-27T19:00:33                 ^~~~~~~~~~~~~~~~
2019-06-27T19:00:33   nwalign/cnwalign.c:1344:14: warning: variable ‘__pyx_bshape_0_a’ set but not used [-Wunused-but-set-variable]
2019-06-27T19:00:33      Py_ssize_t __pyx_bshape_0_a = 0;
2019-06-27T19:00:33                 ^~~~~~~~~~~~~~~~
2019-06-27T19:00:33   nwalign/cnwalign.c:1343:14: warning: variable ‘__pyx_bstride_1_a’ set but not used [-Wunused-but-set-variable]
2019-06-27T19:00:33      Py_ssize_t __pyx_bstride_1_a = 0;
2019-06-27T19:00:33                 ^~~~~~~~~~~~~~~~~
2019-06-27T19:00:33   nwalign/cnwalign.c:1342:14: warning: variable ‘__pyx_bstride_0_a’ set but not used [-Wunused-but-set-variable]
2019-06-27T19:00:33      Py_ssize_t __pyx_bstride_0_a = 0;
2019-06-27T19:00:33                 ^~~~~~~~~~~~~~~~~
2019-06-27T19:00:33   nwalign/cnwalign.c: In function ‘__pyx_pf_7nwalign_8cnwalign_global_align’:
2019-06-27T19:00:33   nwalign/cnwalign.c:3107:16: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration]
2019-06-27T19:00:33      __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-06-27T19:00:33                   ^~~~~~~~~~~~~~~~~~~~~~~~~~
2019-06-27T19:00:33                   PyBytes_FromStringAndSize
2019-06-27T19:00:33   nwalign/cnwalign.c:3107:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-06-27T19:00:33                 ^
2019-06-27T19:00:33   nwalign/cnwalign.c:3116:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-06-27T19:00:33                 ^
2019-06-27T19:00:33   nwalign/cnwalign.c:3125:21: warning: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration]
2019-06-27T19:00:33      __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj);
2019-06-27T19:00:33                        ^~~~~~~~~~~~~~~~~~
2019-06-27T19:00:33                        PyBytes_AS_STRING
2019-06-27T19:00:33   nwalign/cnwalign.c:3125:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj);
2019-06-27T19:00:33                      ^
2019-06-27T19:00:33   nwalign/cnwalign.c:3134:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai);
2019-06-27T19:00:33                      ^
2019-06-27T19:00:33   nwalign/cnwalign.c:3339:3: warning: implicit declaration of function ‘_PyString_Resize’; did you mean ‘_PyTuple_Resize’? [-Wimplicit-function-declaration]
2019-06-27T19:00:33      _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter);
2019-06-27T19:00:33      ^~~~~~~~~~~~~~~~
2019-06-27T19:00:33      _PyTuple_Resize
2019-06-27T19:00:33   nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_global_align_no_matrix’:
2019-06-27T19:00:33   nwalign/cnwalign.c:4446:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-06-27T19:00:33                 ^
2019-06-27T19:00:33   nwalign/cnwalign.c:4455:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-06-27T19:00:33                 ^
2019-06-27T19:00:33   nwalign/cnwalign.c:4464:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj);
2019-06-27T19:00:33                      ^
2019-06-27T19:00:33   nwalign/cnwalign.c:4473:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-06-27T19:00:33      __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai);
2019-06-27T19:00:33                      ^
2019-06-27T19:00:33   At top level:
2019-06-27T19:00:33   nwalign/cnwalign.c:5667:13: warning: ‘__pyx_pf_5numpy_7ndarray___releasebuffer__’ defined but not used [-Wunused-function]
2019-06-27T19:00:33    static void __pyx_pf_5numpy_7ndarray___releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) {
2019-06-27T19:00:33                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-06-27T19:00:33   nwalign/cnwalign.c:4862:12: warning: ‘__pyx_pf_5numpy_7ndarray___getbuffer__’ defined but not used [-Wunused-function]
2019-06-27T19:00:33    static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
2019-06-27T19:00:33               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-06-27T19:00:33   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2019-06-27T19:00:33                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-06-27T19:00:33                    from nwalign/cnwalign.c:158:
2019-06-27T19:00:33   /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2019-06-27T19:00:33    _import_array(void)
2019-06-27T19:00:33    ^~~~~~~~~~~~~
2019-06-27T19:00:48   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/nwalign/cnwalign.o -o build/lib.linux-armv7l-3.7/nwalign/cnwalign.cpython-37m-arm-linux-gnueabihf.so
2019-06-27T19:00:49   installing to build/bdist.linux-armv7l/wheel
2019-06-27T19:00:49   running install
2019-06-27T19:00:49   running install_lib
2019-06-27T19:00:49   creating build/bdist.linux-armv7l
2019-06-27T19:00:49   creating build/bdist.linux-armv7l/wheel
2019-06-27T19:00:49   creating build/bdist.linux-armv7l/wheel/nwalign
2019-06-27T19:00:49   copying build/lib.linux-armv7l-3.7/nwalign/nwserver.py -> build/bdist.linux-armv7l/wheel/nwalign
2019-06-27T19:00:49   copying build/lib.linux-armv7l-3.7/nwalign/cnwalign.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/nwalign
2019-06-27T19:00:49   copying build/lib.linux-armv7l-3.7/nwalign/__init__.py -> build/bdist.linux-armv7l/wheel/nwalign
2019-06-27T19:00:49   copying build/lib.linux-armv7l-3.7/nwalign/cnwalign.c -> build/bdist.linux-armv7l/wheel/nwalign
2019-06-27T19:00:49   running install_egg_info
2019-06-27T19:00:49   Copying nwalign.egg-info to build/bdist.linux-armv7l/wheel/nwalign-0.3.1-py3.7.egg-info
2019-06-27T19:00:49   running install_scripts
2019-06-27T19:00:49   creating build/bdist.linux-armv7l/wheel/nwalign-0.3.1.dist-info/WHEEL
2019-06-27T19:00:49   creating '/tmp/pip-wheel-ket0q1yc/nwalign-0.3.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-06-27T19:00:49   adding 'nwalign/__init__.py'
2019-06-27T19:00:49   adding 'nwalign/cnwalign.c'
2019-06-27T19:00:49   adding 'nwalign/cnwalign.cpython-37m-arm-linux-gnueabihf.so'
2019-06-27T19:00:49   adding 'nwalign/nwserver.py'
2019-06-27T19:00:49   adding 'nwalign-0.3.1.dist-info/METADATA'
2019-06-27T19:00:49   adding 'nwalign-0.3.1.dist-info/WHEEL'
2019-06-27T19:00:49   adding 'nwalign-0.3.1.dist-info/entry_points.txt'
2019-06-27T19:00:49   adding 'nwalign-0.3.1.dist-info/top_level.txt'
2019-06-27T19:00:49   adding 'nwalign-0.3.1.dist-info/RECORD'
2019-06-27T19:00:49   removing build/bdist.linux-armv7l/wheel
2019-06-27T19:00:49   Building wheel for nwalign (setup.py): finished with status 'done'
2019-06-27T19:00:49   Stored in directory: /tmp/tmpbtygt51c
2019-06-27T19:00:49 Successfully built nwalign
2019-06-27T19:00:49 Cleaning up...
2019-06-27T19:00:49   Removing source in /tmp/pip-wheel-h1w_ijb6/nwalign
2019-06-27T19:00:49 Removed build tracker '/tmp/pip-req-tracker-pg83rghq'