2019-06-27T19:38:10 Created temporary directory: /tmp/pip-ephem-wheel-cache-mb2wo478
2019-06-27T19:38:10 Created temporary directory: /tmp/pip-req-tracker-wuflpz5o
2019-06-27T19:38:10 Created requirements tracker '/tmp/pip-req-tracker-wuflpz5o'
2019-06-27T19:38:10 Created temporary directory: /tmp/pip-wheel-lpki3pfs
2019-06-27T19:38:10 Collecting scipion-em-spider==1.0.6
2019-06-27T19:38:10   1 location(s) to search for versions of scipion-em-spider:
2019-06-27T19:38:10   * https://pypi.org/simple/scipion-em-spider/
2019-06-27T19:38:10   Getting page https://pypi.org/simple/scipion-em-spider/
2019-06-27T19:38:10   Analyzing links from page https://pypi.org/simple/scipion-em-spider/
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/1b/98/43ed47f392d1c6d55464ef4e574879966ca8a979c4f76bcead30de46cea7/scipion-em-spider-1.0.0.tar.gz#sha256=596f5191e6166c9c4b970cf4af51122a28b5663261f508e0f125831316680ae2 (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.0
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/31/32/2e700ef702579f8184c68897d393da33e13ed13ee87e81ec3b5e495e0b3a/scipion-em-spider-1.0.1.tar.gz#sha256=d19987cfb69600361401049140c0a1e2e4a6fb5b140429afd261447a5536344f (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.1
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/76/4d/64d4d178c8431e1418593e348a481bea81601e1982944bb2ac4df3779c36/scipion-em-spider-1.0.2.tar.gz#sha256=29d6fd31ea0ffcfc1936e64faa4d3821c789ee48135f88de01254c8c8194154a (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.2
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/09/ac/38bf3d5877f7db6f2061a31b2de72e1aa135b0cc49a8c0ff3d7ca242b9c2/scipion-em-spider-1.0.3.tar.gz#sha256=c43962241eae7606010cefa7804a4faacf049685ad8387a73ea94b1910fcd69e (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.3
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/fb/ce/a2df64d52c73ac0b58fd97fd42f78b5d019920037155ab7ae82d381923c2/scipion-em-spider-1.0.4.tar.gz#sha256=f08c50769f893b89f32325255a1594b552903490819a5e071f87b94f85696f78 (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.4
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/e0/9e/def225ad103bc5a5e287e0c8ea0206b20f98cf0fcdcaad77995e8d9d03cf/scipion-em-spider-1.0.5.tar.gz#sha256=c3f0d782319574a97289d4ed91501d5fcae5ac999ee50223992998be62501822 (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.5
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/8c/5c/4ba2643fad315f93ccddb115a023550e2bedf54ff4a91ac12fc5eda9e7a2/scipion-em-spider-1.0.6.tar.gz#sha256=bf407b1b083a3d1d89d06bb524477df86bc3060552aa79d759b871d62a225f18 (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.6
2019-06-27T19:38:10     Found link https://files.pythonhosted.org/packages/4f/35/a8b4adda200f697e7191a1d2989793564dd692b1ed647550a3cfa241a3ef/scipion-em-spider-1.0.7.tar.gz#sha256=c32d28f83a43ec512ea31c7e1ef1c86d31f3df588aacc04610a8f46faa1b9b2e (from https://pypi.org/simple/scipion-em-spider/), version: 1.0.7
2019-06-27T19:38:10   Using version 1.0.6 (newest of versions: 1.0.6)
2019-06-27T19:38:10   Created temporary directory: /tmp/pip-unpack-158j6eas
2019-06-27T19:38:11   Downloading https://files.pythonhosted.org/packages/8c/5c/4ba2643fad315f93ccddb115a023550e2bedf54ff4a91ac12fc5eda9e7a2/scipion-em-spider-1.0.6.tar.gz (106kB)
2019-06-27T19:38:11   Downloading from URL https://files.pythonhosted.org/packages/8c/5c/4ba2643fad315f93ccddb115a023550e2bedf54ff4a91ac12fc5eda9e7a2/scipion-em-spider-1.0.6.tar.gz#sha256=bf407b1b083a3d1d89d06bb524477df86bc3060552aa79d759b871d62a225f18 (from https://pypi.org/simple/scipion-em-spider/)
2019-06-27T19:38:11   Added scipion-em-spider==1.0.6 from https://files.pythonhosted.org/packages/8c/5c/4ba2643fad315f93ccddb115a023550e2bedf54ff4a91ac12fc5eda9e7a2/scipion-em-spider-1.0.6.tar.gz#sha256=bf407b1b083a3d1d89d06bb524477df86bc3060552aa79d759b871d62a225f18 to build tracker '/tmp/pip-req-tracker-wuflpz5o'
2019-06-27T19:38:11     Running setup.py (path:/tmp/pip-wheel-lpki3pfs/scipion-em-spider/setup.py) egg_info for package scipion-em-spider
2019-06-27T19:38:11     Running command python setup.py egg_info
2019-06-27T19:38:13     running egg_info
2019-06-27T19:38:13     creating pip-egg-info/scipion_em_spider.egg-info
2019-06-27T19:38:13     writing top-level names to pip-egg-info/scipion_em_spider.egg-info/top_level.txt
2019-06-27T19:38:13     writing dependency_links to pip-egg-info/scipion_em_spider.egg-info/dependency_links.txt
2019-06-27T19:38:13     writing pip-egg-info/scipion_em_spider.egg-info/PKG-INFO
2019-06-27T19:38:13     writing manifest file 'pip-egg-info/scipion_em_spider.egg-info/SOURCES.txt'
2019-06-27T19:38:13     reading manifest file 'pip-egg-info/scipion_em_spider.egg-info/SOURCES.txt'
2019-06-27T19:38:13     reading manifest template 'MANIFEST.in'
2019-06-27T19:38:13     writing manifest file 'pip-egg-info/scipion_em_spider.egg-info/SOURCES.txt'
2019-06-27T19:38:14   Source in /tmp/pip-wheel-lpki3pfs/scipion-em-spider has version 1.0.6, which satisfies requirement scipion-em-spider==1.0.6 from https://files.pythonhosted.org/packages/8c/5c/4ba2643fad315f93ccddb115a023550e2bedf54ff4a91ac12fc5eda9e7a2/scipion-em-spider-1.0.6.tar.gz#sha256=bf407b1b083a3d1d89d06bb524477df86bc3060552aa79d759b871d62a225f18
2019-06-27T19:38:14   Removed scipion-em-spider==1.0.6 from https://files.pythonhosted.org/packages/8c/5c/4ba2643fad315f93ccddb115a023550e2bedf54ff4a91ac12fc5eda9e7a2/scipion-em-spider-1.0.6.tar.gz#sha256=bf407b1b083a3d1d89d06bb524477df86bc3060552aa79d759b871d62a225f18 from build tracker '/tmp/pip-req-tracker-wuflpz5o'
2019-06-27T19:38:14 Building wheels for collected packages: scipion-em-spider
2019-06-27T19:38:14   Created temporary directory: /tmp/pip-wheel-sqobaygr
2019-06-27T19:38:14   Building wheel for scipion-em-spider (setup.py): started
2019-06-27T19:38:14   Destination directory: /tmp/pip-wheel-sqobaygr
2019-06-27T19:38:14   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-lpki3pfs/scipion-em-spider/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sqobaygr
2019-06-27T19:38:16   running bdist_wheel
2019-06-27T19:38:16   running build
2019-06-27T19:38:16   running build_py
2019-06-27T19:38:16   creating build
2019-06-27T19:38:16   creating build/lib
2019-06-27T19:38:16   creating build/lib/spider
2019-06-27T19:38:16   copying spider/bibtex.py -> build/lib/spider
2019-06-27T19:38:16   copying spider/objects.py -> build/lib/spider
2019-06-27T19:38:16   copying spider/constants.py -> build/lib/spider
2019-06-27T19:38:16   copying spider/__init__.py -> build/lib/spider
2019-06-27T19:38:16   copying spider/utils.py -> build/lib/spider
2019-06-27T19:38:16   copying spider/wizards.py -> build/lib/spider
2019-06-27T19:38:16   copying spider/convert.py -> build/lib/spider
2019-06-27T19:38:16   creating build/lib/spider/viewers
2019-06-27T19:38:16   copying spider/viewers/viewer.py -> build/lib/spider/viewers
2019-06-27T19:38:16   copying spider/viewers/viewer_classify.py -> build/lib/spider/viewers
2019-06-27T19:38:16   copying spider/viewers/viewer_refinement.py -> build/lib/spider/viewers
2019-06-27T19:38:16   copying spider/viewers/viewer_capca.py -> build/lib/spider/viewers
2019-06-27T19:38:16   copying spider/viewers/__init__.py -> build/lib/spider/viewers
2019-06-27T19:38:16   creating build/lib/spider/tests
2019-06-27T19:38:16   copying spider/tests/__init__.py -> build/lib/spider/tests
2019-06-27T19:38:16   copying spider/tests/test_protocols_spider_reconstruct.py -> build/lib/spider/tests
2019-06-27T19:38:16   copying spider/tests/test_workflow_spiderMDA.py -> build/lib/spider/tests
2019-06-27T19:38:16   copying spider/tests/test_protocols_spider_projmatch.py -> build/lib/spider/tests
2019-06-27T19:38:16   copying spider/tests/test_protocols_spider_align.py -> build/lib/spider/tests
2019-06-27T19:38:16   creating build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_custommask.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_projmatch.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_classify_kmeans.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_align_base.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_reconstruct.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_align_pairwise.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_classify_diday.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_align_apsr.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_classify_ward.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/__init__.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_ca_pca.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_classify_base.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_filters.py -> build/lib/spider/protocols
2019-06-27T19:38:16   copying spider/protocols/protocol_base.py -> build/lib/spider/protocols
2019-06-27T19:38:16   running egg_info
2019-06-27T19:38:16   writing scipion_em_spider.egg-info/PKG-INFO
2019-06-27T19:38:16   writing top-level names to scipion_em_spider.egg-info/top_level.txt
2019-06-27T19:38:16   writing dependency_links to scipion_em_spider.egg-info/dependency_links.txt
2019-06-27T19:38:16   reading manifest file 'scipion_em_spider.egg-info/SOURCES.txt'
2019-06-27T19:38:16   reading manifest template 'MANIFEST.in'
2019-06-27T19:38:16   writing manifest file 'scipion_em_spider.egg-info/SOURCES.txt'
2019-06-27T19:38:16   copying spider/protocols.conf -> build/lib/spider
2019-06-27T19:38:16   creating build/lib/spider/scripts
2019-06-27T19:38:16   copying spider/scripts/cp_endian.spi -> build/lib/spider/scripts
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02
2019-06-27T19:38:16   copying spider/scripts/25.02/recons_fourier.txt -> build/lib/spider/scripts/25.02
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/apsr4class.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/ca-pca.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/center1.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/classavg.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/cluster.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/custommask.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/hierarchical.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/kmeans.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   copying spider/scripts/25.02/mda/pairwise.msa -> build/lib/spider/scripts/25.02/mda
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02/mpi
2019-06-27T19:38:16   copying spider/scripts/25.02/mpi/bp-32f.mpi -> build/lib/spider/scripts/25.02/mpi
2019-06-27T19:38:16   copying spider/scripts/25.02/mpi/bp-3f.mpi -> build/lib/spider/scripts/25.02/mpi
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02/projmatch
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02/projmatch/Refinement
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/endmerge.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/endrefine.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/enhance.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/grploop.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/mergegroups.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/prepare.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/refine.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/refine_settings.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/defocus-groups/smangloop.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:16   creating build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/enhance.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/merge-fsc-filt.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-bp.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-loop.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-prjrefs.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-setrefangles.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-smangloop.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine_settings.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/show-r2.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:16   copying spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/sphdecon.pam -> build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   installing to build/bdist.linux-armv7l/wheel
2019-06-27T19:38:17   running install
2019-06-27T19:38:17   running install_lib
2019-06-27T19:38:17   creating build/bdist.linux-armv7l
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/viewers
2019-06-27T19:38:17   copying build/lib/spider/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/spider/viewers
2019-06-27T19:38:17   copying build/lib/spider/viewers/viewer_classify.py -> build/bdist.linux-armv7l/wheel/spider/viewers
2019-06-27T19:38:17   copying build/lib/spider/viewers/viewer_refinement.py -> build/bdist.linux-armv7l/wheel/spider/viewers
2019-06-27T19:38:17   copying build/lib/spider/viewers/viewer_capca.py -> build/bdist.linux-armv7l/wheel/spider/viewers
2019-06-27T19:38:17   copying build/lib/spider/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/spider/viewers
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/tests
2019-06-27T19:38:17   copying build/lib/spider/tests/__init__.py -> build/bdist.linux-armv7l/wheel/spider/tests
2019-06-27T19:38:17   copying build/lib/spider/tests/test_protocols_spider_reconstruct.py -> build/bdist.linux-armv7l/wheel/spider/tests
2019-06-27T19:38:17   copying build/lib/spider/tests/test_workflow_spiderMDA.py -> build/bdist.linux-armv7l/wheel/spider/tests
2019-06-27T19:38:17   copying build/lib/spider/tests/test_protocols_spider_projmatch.py -> build/bdist.linux-armv7l/wheel/spider/tests
2019-06-27T19:38:17   copying build/lib/spider/tests/test_protocols_spider_align.py -> build/bdist.linux-armv7l/wheel/spider/tests
2019-06-27T19:38:17   copying build/lib/spider/bibtex.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   copying build/lib/spider/objects.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   copying build/lib/spider/constants.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/recons_fourier.txt -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mpi
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mpi/bp-3f.mpi -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mpi
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mpi/bp-32f.mpi -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mpi
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/pairwise.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/kmeans.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/hierarchical.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/apsr4class.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/custommask.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/cluster.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/ca-pca.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/center1.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/mda/classavg.msa -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/mda
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/sphdecon.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine_settings.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/show-r2.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-prjrefs.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/merge-fsc-filt.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-loop.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-setrefangles.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/enhance.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-smangloop.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-bp.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/no-defocus-groups
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/grploop.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/refine_settings.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/endmerge.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/refine.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/smangloop.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/endrefine.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/enhance.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/mergegroups.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/25.02/projmatch/Refinement/defocus-groups/prepare.pam -> build/bdist.linux-armv7l/wheel/spider/scripts/25.02/projmatch/Refinement/defocus-groups
2019-06-27T19:38:17   copying build/lib/spider/scripts/cp_endian.spi -> build/bdist.linux-armv7l/wheel/spider/scripts
2019-06-27T19:38:17   copying build/lib/spider/protocols.conf -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   copying build/lib/spider/__init__.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   copying build/lib/spider/utils.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_custommask.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_classify_kmeans.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_align_base.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_align_pairwise.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_classify_diday.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_align_apsr.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_classify_ward.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_ca_pca.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_classify_base.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_filters.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/spider/protocols
2019-06-27T19:38:17   copying build/lib/spider/wizards.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   copying build/lib/spider/convert.py -> build/bdist.linux-armv7l/wheel/spider
2019-06-27T19:38:17   running install_egg_info
2019-06-27T19:38:17   Copying scipion_em_spider.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_spider-1.0.6-py3.5.egg-info
2019-06-27T19:38:17   running install_scripts
2019-06-27T19:38:17   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2019-06-27T19:38:17   creating build/bdist.linux-armv7l/wheel/scipion_em_spider-1.0.6.dist-info/WHEEL
2019-06-27T19:38:17   creating '/tmp/pip-wheel-sqobaygr/scipion_em_spider-1.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-06-27T19:38:17   adding 'spider/__init__.py'
2019-06-27T19:38:17   adding 'spider/bibtex.py'
2019-06-27T19:38:17   adding 'spider/constants.py'
2019-06-27T19:38:17   adding 'spider/convert.py'
2019-06-27T19:38:17   adding 'spider/objects.py'
2019-06-27T19:38:17   adding 'spider/protocols.conf'
2019-06-27T19:38:17   adding 'spider/utils.py'
2019-06-27T19:38:17   adding 'spider/wizards.py'
2019-06-27T19:38:17   adding 'spider/protocols/__init__.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_align_apsr.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_align_base.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_align_pairwise.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_base.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_ca_pca.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_classify_base.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_classify_diday.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_classify_kmeans.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_classify_ward.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_custommask.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_filters.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_projmatch.py'
2019-06-27T19:38:17   adding 'spider/protocols/protocol_reconstruct.py'
2019-06-27T19:38:17   adding 'spider/scripts/cp_endian.spi'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/recons_fourier.txt'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/apsr4class.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/ca-pca.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/center1.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/classavg.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/cluster.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/custommask.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/hierarchical.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/kmeans.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mda/pairwise.msa'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mpi/bp-32f.mpi'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/mpi/bp-3f.mpi'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/endmerge.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/endrefine.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/enhance.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/grploop.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/mergegroups.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/prepare.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/refine.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/refine_settings.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/defocus-groups/smangloop.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/enhance.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/merge-fsc-filt.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-bp.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-loop.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-prjrefs.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-setrefangles.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine-smangloop.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/refine_settings.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/show-r2.pam'
2019-06-27T19:38:17   adding 'spider/scripts/25.02/projmatch/Refinement/no-defocus-groups/sphdecon.pam'
2019-06-27T19:38:17   adding 'spider/tests/__init__.py'
2019-06-27T19:38:17   adding 'spider/tests/test_protocols_spider_align.py'
2019-06-27T19:38:17   adding 'spider/tests/test_protocols_spider_projmatch.py'
2019-06-27T19:38:17   adding 'spider/tests/test_protocols_spider_reconstruct.py'
2019-06-27T19:38:17   adding 'spider/tests/test_workflow_spiderMDA.py'
2019-06-27T19:38:17   adding 'spider/viewers/__init__.py'
2019-06-27T19:38:17   adding 'spider/viewers/viewer.py'
2019-06-27T19:38:17   adding 'spider/viewers/viewer_capca.py'
2019-06-27T19:38:17   adding 'spider/viewers/viewer_classify.py'
2019-06-27T19:38:17   adding 'spider/viewers/viewer_refinement.py'
2019-06-27T19:38:17   adding 'scipion_em_spider-1.0.6.dist-info/LICENSE'
2019-06-27T19:38:18   adding 'scipion_em_spider-1.0.6.dist-info/METADATA'
2019-06-27T19:38:18   adding 'scipion_em_spider-1.0.6.dist-info/WHEEL'
2019-06-27T19:38:18   adding 'scipion_em_spider-1.0.6.dist-info/top_level.txt'
2019-06-27T19:38:18   adding 'scipion_em_spider-1.0.6.dist-info/RECORD'
2019-06-27T19:38:18   removing build/bdist.linux-armv7l/wheel
2019-06-27T19:38:18   Building wheel for scipion-em-spider (setup.py): finished with status 'done'
2019-06-27T19:38:18   Stored in directory: /tmp/tmpnjhxuxpz
2019-06-27T19:38:18 Successfully built scipion-em-spider
2019-06-27T19:38:18 Cleaning up...
2019-06-27T19:38:18   Removing source in /tmp/pip-wheel-lpki3pfs/scipion-em-spider
2019-06-27T19:38:18 Removed build tracker '/tmp/pip-req-tracker-wuflpz5o'