2019-06-29T05:18:42 Created temporary directory: /tmp/pip-ephem-wheel-cache-nnnegjf1
2019-06-29T05:18:42 Created temporary directory: /tmp/pip-req-tracker-26q8xe75
2019-06-29T05:18:42 Created requirements tracker '/tmp/pip-req-tracker-26q8xe75'
2019-06-29T05:18:42 Created temporary directory: /tmp/pip-wheel-3l4nbziw
2019-06-29T05:18:42 Collecting gat==0.1
2019-06-29T05:18:42   1 location(s) to search for versions of gat:
2019-06-29T05:18:42   * https://pypi.org/simple/gat/
2019-06-29T05:18:42   Getting page https://pypi.org/simple/gat/
2019-06-29T05:18:42   Analyzing links from page https://pypi.org/simple/gat/
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5
2019-06-29T05:18:42     Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6
2019-06-29T05:18:42   Using version 0.1 (newest of versions: 0.1)
2019-06-29T05:18:42   Created temporary directory: /tmp/pip-unpack-jsr_i9sz
2019-06-29T05:18:42   Downloading https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz (62kB)
2019-06-29T05:18:42   Downloading from URL https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/)
2019-06-29T05:18:42   Added gat==0.1 from https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f to build tracker '/tmp/pip-req-tracker-26q8xe75'
2019-06-29T05:18:42     Running setup.py (path:/tmp/pip-wheel-3l4nbziw/gat/setup.py) egg_info for package gat
2019-06-29T05:18:42     Running command python setup.py egg_info
2019-06-29T05:18:44     running egg_info
2019-06-29T05:18:44     creating pip-egg-info/gat.egg-info
2019-06-29T05:18:44     writing pip-egg-info/gat.egg-info/PKG-INFO
2019-06-29T05:18:44     writing dependency_links to pip-egg-info/gat.egg-info/dependency_links.txt
2019-06-29T05:18:44     writing top-level names to pip-egg-info/gat.egg-info/top_level.txt
2019-06-29T05:18:44     writing manifest file 'pip-egg-info/gat.egg-info/SOURCES.txt'
2019-06-29T05:18:45     reading manifest file 'pip-egg-info/gat.egg-info/SOURCES.txt'
2019-06-29T05:18:45     reading manifest template 'MANIFEST.in'
2019-06-29T05:18:45     warning: no files found matching 'COPYING'
2019-06-29T05:18:45     warning: no files found matching 'INSTALL'
2019-06-29T05:18:45     warning: no files found matching 'KNOWN_BUGS'
2019-06-29T05:18:45     warning: no files found matching 'THANKS'
2019-06-29T05:18:45     warning: no files found matching 'distribute_setup.py'
2019-06-29T05:18:45     writing manifest file 'pip-egg-info/gat.egg-info/SOURCES.txt'
2019-06-29T05:18:45   Source in /tmp/pip-wheel-3l4nbziw/gat has version 0.1, which satisfies requirement gat==0.1 from https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f
2019-06-29T05:18:45   Removed gat==0.1 from https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f from build tracker '/tmp/pip-req-tracker-26q8xe75'
2019-06-29T05:18:45 Building wheels for collected packages: gat
2019-06-29T05:18:45   Created temporary directory: /tmp/pip-wheel-hig_g1ob
2019-06-29T05:18:45   Building wheel for gat (setup.py): started
2019-06-29T05:18:45   Destination directory: /tmp/pip-wheel-hig_g1ob
2019-06-29T05:18:45   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-3l4nbziw/gat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hig_g1ob
2019-06-29T05:18:46   running bdist_wheel
2019-06-29T05:18:46   running build
2019-06-29T05:18:46   running build_py
2019-06-29T05:18:47   creating build
2019-06-29T05:18:47   creating build/lib.linux-armv7l-3.7
2019-06-29T05:18:47   creating build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   copying gat/Experiment.py -> build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   copying gat/IOTools.py -> build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   copying gat/Bed.py -> build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   copying gat/Stats.py -> build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   copying gat/IO.py -> build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   copying gat/__init__.py -> build/lib.linux-armv7l-3.7/gat
2019-06-29T05:18:47   running build_ext
2019-06-29T05:18:47   cythoning segmentlist/csegmentlist.pyx to segmentlist/csegmentlist.c
2019-06-29T05:18:48   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3l4nbziw/gat/segmentlist/csegmentlist.pxd
2019-06-29T05:18:48     tree = Parsing.p_module(s, pxd, full_module_name)
2019-06-29T05:18:53   building 'csegmentlist' extension
2019-06-29T05:18:53   creating build/temp.linux-armv7l-3.7
2019-06-29T05:18:53   creating build/temp.linux-armv7l-3.7/segmentlist
2019-06-29T05:18:53   creating build/temp.linux-armv7l-3.7/utils
2019-06-29T05:18:53   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/lib64/python2.6/site-packages/numpy/core/include -I. -I/usr/include/python3.7m -c segmentlist/csegmentlist.c -o build/temp.linux-armv7l-3.7/segmentlist/csegmentlist.o
2019-06-29T05:18:54   In file included from /usr/include/python3.7m/numpy/ndarraytypes.h:1822,
2019-06-29T05:18:54                    from /usr/include/python3.7m/numpy/ndarrayobject.h:12,
2019-06-29T05:18:54                    from /usr/include/python3.7m/numpy/arrayobject.h:4,
2019-06-29T05:18:54                    from segmentlist/csegmentlist.c:620:
2019-06-29T05:18:54   /usr/include/python3.7m/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-06-29T05:18:54    #warning "Using deprecated NumPy API, disable it with " \
2019-06-29T05:18:54     ^~~~~~~
2019-06-29T05:18:54   segmentlist/csegmentlist.c: In function ‘__Pyx_modinit_type_init_code’:
2019-06-29T05:18:54   segmentlist/csegmentlist.c:18502:107: error: ‘PyFileObject’ undeclared (first use in this function); did you mean ‘PyFrameObject’?
2019-06-29T05:18:54      __pyx_ptype_12csegmentlist_file = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "file", sizeof(PyFileObject), __Pyx_ImportType_CheckSize_Warn);
2019-06-29T05:18:54                                                                                                              ^~~~~~~~~~~~
2019-06-29T05:18:54                                                                                                              PyFrameObject
2019-06-29T05:18:54   segmentlist/csegmentlist.c:18502:107: note: each undeclared identifier is reported only once for each function it appears in
2019-06-29T05:18:56   At top level:
2019-06-29T05:18:56   segmentlist/csegmentlist.c:2853:12: warning: ‘__pyx_f_12csegmentlist_cmpDouble’ defined but not used [-Wunused-function]
2019-06-29T05:18:56    static int __pyx_f_12csegmentlist_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-06-29T05:18:56               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-06-29T05:18:56   segmentlist/csegmentlist.c:2816:12: warning: ‘__pyx_f_12csegmentlist_cmpPosition’ defined but not used [-Wunused-function]
2019-06-29T05:18:56    static int __pyx_f_12csegmentlist_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-06-29T05:18:56               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-06-29T05:18:56   segmentlist/csegmentlist.c:2755:12: warning: ‘__pyx_f_12csegmentlist_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function]
2019-06-29T05:18:56    static int __pyx_f_12csegmentlist_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-06-29T05:18:56               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-06-29T05:18:56   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-06-29T05:18:56   Building wheel for gat (setup.py): finished with status 'error'
2019-06-29T05:18:56   ERROR: Failed building wheel for gat
2019-06-29T05:18:56   Running setup.py clean for gat
2019-06-29T05:18:56   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-3l4nbziw/gat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-06-29T05:18:58   running clean
2019-06-29T05:18:58   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-06-29T05:18:58   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-06-29T05:18:58   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-06-29T05:18:58   'build/scripts-3.7' does not exist -- can't clean it
2019-06-29T05:18:58   removing 'build'
2019-06-29T05:18:58 Failed to build gat
2019-06-29T05:18:58 Cleaning up...
2019-06-29T05:18:58   Removing source in /tmp/pip-wheel-3l4nbziw/gat
2019-06-29T05:18:58 Removed build tracker '/tmp/pip-req-tracker-26q8xe75'
2019-06-29T05:18:59 ERROR: Failed to build one or more wheels
2019-06-29T05:18:59 Exception information:
2019-06-29T05:18:59 Traceback (most recent call last):
2019-06-29T05:18:59   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-06-29T05:18:59     status = self.run(options, args)
2019-06-29T05:18:59   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-06-29T05:18:59     "Failed to build one or more wheels"
2019-06-29T05:18:59 pip._internal.exceptions.CommandError: Failed to build one or more wheels