2019-07-03T01:39:36 Created temporary directory: /tmp/pip-ephem-wheel-cache-ll7nupva
2019-07-03T01:39:36 Created temporary directory: /tmp/pip-req-tracker-m3492tt6
2019-07-03T01:39:36 Created requirements tracker '/tmp/pip-req-tracker-m3492tt6'
2019-07-03T01:39:36 Created temporary directory: /tmp/pip-wheel-bzmtdgr_
2019-07-03T01:39:36 Collecting centurion==0.1.1
2019-07-03T01:39:36   1 location(s) to search for versions of centurion:
2019-07-03T01:39:36   * https://pypi.org/simple/centurion/
2019-07-03T01:39:36   Getting page https://pypi.org/simple/centurion/
2019-07-03T01:39:36   Analyzing links from page https://pypi.org/simple/centurion/
2019-07-03T01:39:36     Found link https://files.pythonhosted.org/packages/c1/73/acb8511a770f09bd9d324932ee61df99e7769535285c75c4dd746be7d38a/centurion-0.1.1.tar.gz#sha256=32c5daf96c9379a95721185c81e8866df155f803361393504dba70b8774786ec (from https://pypi.org/simple/centurion/), version: 0.1.1
2019-07-03T01:39:36   Using version 0.1.1 (newest of versions: 0.1.1)
2019-07-03T01:39:36   Created temporary directory: /tmp/pip-unpack-oj3q72wa
2019-07-03T01:39:37   Downloading https://files.pythonhosted.org/packages/c1/73/acb8511a770f09bd9d324932ee61df99e7769535285c75c4dd746be7d38a/centurion-0.1.1.tar.gz (354kB)
2019-07-03T01:39:37   Downloading from URL https://files.pythonhosted.org/packages/c1/73/acb8511a770f09bd9d324932ee61df99e7769535285c75c4dd746be7d38a/centurion-0.1.1.tar.gz#sha256=32c5daf96c9379a95721185c81e8866df155f803361393504dba70b8774786ec (from https://pypi.org/simple/centurion/)
2019-07-03T01:39:37   Added centurion==0.1.1 from https://files.pythonhosted.org/packages/c1/73/acb8511a770f09bd9d324932ee61df99e7769535285c75c4dd746be7d38a/centurion-0.1.1.tar.gz#sha256=32c5daf96c9379a95721185c81e8866df155f803361393504dba70b8774786ec to build tracker '/tmp/pip-req-tracker-m3492tt6'
2019-07-03T01:39:37     Running setup.py (path:/tmp/pip-wheel-bzmtdgr_/centurion/setup.py) egg_info for package centurion
2019-07-03T01:39:37     Running command python setup.py egg_info
2019-07-03T01:39:39     non-existing path in 'centurion/externals/iced/io': '../src/cblas'
2019-07-03T01:39:39     non-existing path in 'centurion/externals/iced/io': '../src/cblas'
2019-07-03T01:39:39     non-existing path in 'centurion/externals/iced': '../src/cblas'
2019-07-03T01:39:39     non-existing path in 'centurion/externals/iced': '../src/cblas'
2019-07-03T01:39:39     running egg_info
2019-07-03T01:39:39     running build_src
2019-07-03T01:39:39     build_src
2019-07-03T01:39:39     building extension "centurion.externals.iced.io.fastio_" sources
2019-07-03T01:39:39     building extension "centurion.externals.iced.io.read" sources
2019-07-03T01:39:39     building extension "centurion.externals.iced._normalization_" sources
2019-07-03T01:39:39     building extension "centurion.externals.iced._filter_" sources
2019-07-03T01:39:39     building data_files sources
2019-07-03T01:39:39     build_src: building npy-pkg config files
2019-07-03T01:39:39     creating pip-egg-info/centurion.egg-info
2019-07-03T01:39:39     writing pip-egg-info/centurion.egg-info/PKG-INFO
2019-07-03T01:39:39     writing dependency_links to pip-egg-info/centurion.egg-info/dependency_links.txt
2019-07-03T01:39:39     writing top-level names to pip-egg-info/centurion.egg-info/top_level.txt
2019-07-03T01:39:39     writing manifest file 'pip-egg-info/centurion.egg-info/SOURCES.txt'
2019-07-03T01:39:39     reading manifest file 'pip-egg-info/centurion.egg-info/SOURCES.txt'
2019-07-03T01:39:39     writing manifest file 'pip-egg-info/centurion.egg-info/SOURCES.txt'
2019-07-03T01:39:39   Source in /tmp/pip-wheel-bzmtdgr_/centurion has version 0.1.1, which satisfies requirement centurion==0.1.1 from https://files.pythonhosted.org/packages/c1/73/acb8511a770f09bd9d324932ee61df99e7769535285c75c4dd746be7d38a/centurion-0.1.1.tar.gz#sha256=32c5daf96c9379a95721185c81e8866df155f803361393504dba70b8774786ec
2019-07-03T01:39:39   Removed centurion==0.1.1 from https://files.pythonhosted.org/packages/c1/73/acb8511a770f09bd9d324932ee61df99e7769535285c75c4dd746be7d38a/centurion-0.1.1.tar.gz#sha256=32c5daf96c9379a95721185c81e8866df155f803361393504dba70b8774786ec from build tracker '/tmp/pip-req-tracker-m3492tt6'
2019-07-03T01:39:39 Building wheels for collected packages: centurion
2019-07-03T01:39:39   Created temporary directory: /tmp/pip-wheel-2w175_ig
2019-07-03T01:39:39   Building wheel for centurion (setup.py): started
2019-07-03T01:39:39   Destination directory: /tmp/pip-wheel-2w175_ig
2019-07-03T01:39:39   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-bzmtdgr_/centurion/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2w175_ig
2019-07-03T01:39:41   non-existing path in 'centurion/externals/iced/io': '../src/cblas'
2019-07-03T01:39:41   non-existing path in 'centurion/externals/iced/io': '../src/cblas'
2019-07-03T01:39:41   non-existing path in 'centurion/externals/iced': '../src/cblas'
2019-07-03T01:39:41   non-existing path in 'centurion/externals/iced': '../src/cblas'
2019-07-03T01:39:42   running bdist_wheel
2019-07-03T01:39:42   running build
2019-07-03T01:39:42   running config_cc
2019-07-03T01:39:42   unifing config_cc, config, build_clib, build_ext, build commands --compiler options
2019-07-03T01:39:42   running config_fc
2019-07-03T01:39:42   unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
2019-07-03T01:39:42   running build_src
2019-07-03T01:39:42   build_src
2019-07-03T01:39:42   building extension "centurion.externals.iced.io.fastio_" sources
2019-07-03T01:39:42   building extension "centurion.externals.iced.io.read" sources
2019-07-03T01:39:42   building extension "centurion.externals.iced._normalization_" sources
2019-07-03T01:39:42   building extension "centurion.externals.iced._filter_" sources
2019-07-03T01:39:42   building data_files sources
2019-07-03T01:39:42   build_src: building npy-pkg config files
2019-07-03T01:39:42   running build_py
2019-07-03T01:39:42   creating build
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/__init__.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/validation.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/config.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/centromeres_calls.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/utils.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/optimization.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/setup.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   copying centurion/prelocalization_.py -> build/lib.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion/externals
2019-07-03T01:39:42   copying centurion/externals/__init__.py -> build/lib.linux-armv7l-3.7/centurion/externals
2019-07-03T01:39:42   copying centurion/externals/setup.py -> build/lib.linux-armv7l-3.7/centurion/externals
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/memory.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/testing.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/func_inspect.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/_compat.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/__init__.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/my_exceptions.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/hashing.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/logger.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/numpy_pickle.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/disk.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/format_stack.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/parallel.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/pool.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   copying centurion/externals/joblib/_multiprocessing_helpers.py -> build/lib.linux-armv7l-3.7/centurion/externals/joblib
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion/externals/iced
2019-07-03T01:39:42   copying centurion/externals/iced/__init__.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced
2019-07-03T01:39:42   copying centurion/externals/iced/filter.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced
2019-07-03T01:39:42   copying centurion/externals/iced/normalization.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced
2019-07-03T01:39:42   copying centurion/externals/iced/setup.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion/externals/iced/utils
2019-07-03T01:39:42   copying centurion/externals/iced/utils/__init__.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/utils
2019-07-03T01:39:42   copying centurion/externals/iced/utils/validation.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/utils
2019-07-03T01:39:42   copying centurion/externals/iced/utils/_validation.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/utils
2019-07-03T01:39:42   copying centurion/externals/iced/utils/_genome.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/utils
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion/externals/iced/datasets
2019-07-03T01:39:42   copying centurion/externals/iced/datasets/__init__.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/datasets
2019-07-03T01:39:42   copying centurion/externals/iced/datasets/dldata.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/datasets
2019-07-03T01:39:42   copying centurion/externals/iced/datasets/base.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/datasets
2019-07-03T01:39:42   copying centurion/externals/iced/datasets/setup.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/datasets
2019-07-03T01:39:42   creating build/lib.linux-armv7l-3.7/centurion/externals/iced/io
2019-07-03T01:39:42   copying centurion/externals/iced/io/__init__.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/io
2019-07-03T01:39:42   copying centurion/externals/iced/io/_io_pandas.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/io
2019-07-03T01:39:42   copying centurion/externals/iced/io/_io_else.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/io
2019-07-03T01:39:42   copying centurion/externals/iced/io/setup.py -> build/lib.linux-armv7l-3.7/centurion/externals/iced/io
2019-07-03T01:39:42   running build_ext
2019-07-03T01:39:42   customize UnixCCompiler
2019-07-03T01:39:42   customize UnixCCompiler using build_ext
2019-07-03T01:39:42   building 'centurion.externals.iced.io.fastio_' extension
2019-07-03T01:39:42   compiling C sources
2019-07-03T01:39:42   C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2019-07-03T01:39:42   creating build/temp.linux-armv7l-3.7/centurion
2019-07-03T01:39:42   creating build/temp.linux-armv7l-3.7/centurion/externals
2019-07-03T01:39:42   creating build/temp.linux-armv7l-3.7/centurion/externals/iced
2019-07-03T01:39:42   creating build/temp.linux-armv7l-3.7/centurion/externals/iced/io
2019-07-03T01:39:42   compile options: '-I../src/cblas -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c'
2019-07-03T01:39:42   arm-linux-gnueabihf-gcc: centurion/externals/iced/io/fastio_.c
2019-07-03T01:39:42   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-03T01:39:42                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-03T01:39:42                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-03T01:39:42                    from centurion/externals/iced/io/fastio_.c:352:
2019-07-03T01:39:42   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-03T01:39:42    #warning "Using deprecated NumPy API, disable it with " \
2019-07-03T01:39:42     ^~~~~~~
2019-07-03T01:39:42   centurion/externals/iced/io/fastio_.c:355:10: fatal error: write.c: No such file or directory
2019-07-03T01:39:42    #include "write.c"
2019-07-03T01:39:42             ^~~~~~~~~
2019-07-03T01:39:42   compilation terminated.
2019-07-03T01:39:42   error: Command "arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../src/cblas -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c centurion/externals/iced/io/fastio_.c -o build/temp.linux-armv7l-3.7/centurion/externals/iced/io/fastio_.o -MMD -MF build/temp.linux-armv7l-3.7/centurion/externals/iced/io/fastio_.o.d" failed with exit status 1
2019-07-03T01:39:43   Building wheel for centurion (setup.py): finished with status 'error'
2019-07-03T01:39:43   ERROR: Failed building wheel for centurion
2019-07-03T01:39:43   Running setup.py clean for centurion
2019-07-03T01:39:43   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-bzmtdgr_/centurion/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-03T01:39:45   non-existing path in 'centurion/externals/iced/io': '../src/cblas'
2019-07-03T01:39:45   non-existing path in 'centurion/externals/iced/io': '../src/cblas'
2019-07-03T01:39:45   non-existing path in 'centurion/externals/iced': '../src/cblas'
2019-07-03T01:39:45   non-existing path in 'centurion/externals/iced': '../src/cblas'
2019-07-03T01:39:45   running clean
2019-07-03T01:39:45   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-07-03T01:39:45   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-03T01:39:45   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-03T01:39:45   'build/scripts.linux-armv7l-3.7' does not exist -- can't clean it
2019-07-03T01:39:45   removing 'build'
2019-07-03T01:39:45 Failed to build centurion
2019-07-03T01:39:45 Cleaning up...
2019-07-03T01:39:45   Removing source in /tmp/pip-wheel-bzmtdgr_/centurion
2019-07-03T01:39:45 Removed build tracker '/tmp/pip-req-tracker-m3492tt6'
2019-07-03T01:39:45 ERROR: Failed to build one or more wheels
2019-07-03T01:39:45 Exception information:
2019-07-03T01:39:45 Traceback (most recent call last):
2019-07-03T01:39:45   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-03T01:39:45     status = self.run(options, args)
2019-07-03T01:39:45   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-03T01:39:45     "Failed to build one or more wheels"
2019-07-03T01:39:45 pip._internal.exceptions.CommandError: Failed to build one or more wheels