2019-07-04T19:23:26 Created temporary directory: /tmp/pip-ephem-wheel-cache-43axp7j7
2019-07-04T19:23:26 Created temporary directory: /tmp/pip-req-tracker-vwrbr07_
2019-07-04T19:23:26 Created requirements tracker '/tmp/pip-req-tracker-vwrbr07_'
2019-07-04T19:23:26 Created temporary directory: /tmp/pip-wheel-tv9q89wc
2019-07-04T19:23:26 Collecting seqlib==0.0.3
2019-07-04T19:23:26   1 location(s) to search for versions of seqlib:
2019-07-04T19:23:26   * https://pypi.org/simple/seqlib/
2019-07-04T19:23:26   Getting page https://pypi.org/simple/seqlib/
2019-07-04T19:23:26   Analyzing links from page https://pypi.org/simple/seqlib/
2019-07-04T19:23:26     Found link https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz#sha256=8cdebb37cfb507352026b08d97c84ca044d968c09b3cbe4a2fcec7a75745d108 (from https://pypi.org/simple/seqlib/), version: 0.0.2
2019-07-04T19:23:26     Found link https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz#sha256=1ef7389d3a2bf74472b77d77c28b5dd4b1f48488bb1a3f2ff5e64ea481003789 (from https://pypi.org/simple/seqlib/), version: 0.0.3
2019-07-04T19:23:26     Skipping link https://files.pythonhosted.org/packages/f0/04/ff9d870e2c374d0fa0b8127b0ab225c241fa6cbe28cb9cc58ad901fa0dd5/seqlib-0.0.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=81e611485e82d85a1bc6f3107fe5c0cb0e2646490b54e51c38af8174a23dfd45 (from https://pypi.org/simple/seqlib/); it is not compatible with this Python
2019-07-04T19:23:26     Found link https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz#sha256=894079eb3845d680ced3358150c872508943af7c67d589bd42bce2f1d4a88a22 (from https://pypi.org/simple/seqlib/), version: 0.0.5
2019-07-04T19:23:26     Skipping link https://files.pythonhosted.org/packages/07/06/4177555c0421661b1d3d8a6d60c25df7527a4653792f76f6077a217f9e2b/seqlib-0.0.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=3d06a237f1573c6f6c6b8150997d712f7b3f8ed5fdfb867ebe627329c5eb1148 (from https://pypi.org/simple/seqlib/); it is not compatible with this Python
2019-07-04T19:23:26     Found link https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz#sha256=aa802c120213cd5b4a035bc57683766d766267e82a0ce918e019bc896c28a97e (from https://pypi.org/simple/seqlib/), version: 0.0.6
2019-07-04T19:23:26   Using version 0.0.3 (newest of versions: 0.0.3)
2019-07-04T19:23:26   Created temporary directory: /tmp/pip-unpack-v_i0mef9
2019-07-04T19:23:26   Downloading https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz (1.8MB)
2019-07-04T19:23:26   Downloading from URL https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz#sha256=1ef7389d3a2bf74472b77d77c28b5dd4b1f48488bb1a3f2ff5e64ea481003789 (from https://pypi.org/simple/seqlib/)
2019-07-04T19:23:29   Added seqlib==0.0.3 from https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz#sha256=1ef7389d3a2bf74472b77d77c28b5dd4b1f48488bb1a3f2ff5e64ea481003789 to build tracker '/tmp/pip-req-tracker-vwrbr07_'
2019-07-04T19:23:29     Running setup.py (path:/tmp/pip-wheel-tv9q89wc/seqlib/setup.py) egg_info for package seqlib
2019-07-04T19:23:29     Running command python setup.py egg_info
2019-07-04T19:23:30     running egg_info
2019-07-04T19:23:30     creating pip-egg-info/seqlib.egg-info
2019-07-04T19:23:30     writing pip-egg-info/seqlib.egg-info/PKG-INFO
2019-07-04T19:23:30     writing dependency_links to pip-egg-info/seqlib.egg-info/dependency_links.txt
2019-07-04T19:23:30     writing requirements to pip-egg-info/seqlib.egg-info/requires.txt
2019-07-04T19:23:30     writing top-level names to pip-egg-info/seqlib.egg-info/top_level.txt
2019-07-04T19:23:30     writing manifest file 'pip-egg-info/seqlib.egg-info/SOURCES.txt'
2019-07-04T19:23:31     reading manifest file 'pip-egg-info/seqlib.egg-info/SOURCES.txt'
2019-07-04T19:23:31     reading manifest template 'MANIFEST.in'
2019-07-04T19:23:31     writing manifest file 'pip-egg-info/seqlib.egg-info/SOURCES.txt'
2019-07-04T19:23:31   Source in /tmp/pip-wheel-tv9q89wc/seqlib has version 0.0.3, which satisfies requirement seqlib==0.0.3 from https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz#sha256=1ef7389d3a2bf74472b77d77c28b5dd4b1f48488bb1a3f2ff5e64ea481003789
2019-07-04T19:23:31   Removed seqlib==0.0.3 from https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz#sha256=1ef7389d3a2bf74472b77d77c28b5dd4b1f48488bb1a3f2ff5e64ea481003789 from build tracker '/tmp/pip-req-tracker-vwrbr07_'
2019-07-04T19:23:31 Building wheels for collected packages: seqlib
2019-07-04T19:23:31   Created temporary directory: /tmp/pip-wheel-ts799kqn
2019-07-04T19:23:31   Building wheel for seqlib (setup.py): started
2019-07-04T19:23:31   Destination directory: /tmp/pip-wheel-ts799kqn
2019-07-04T19:23:31   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-tv9q89wc/seqlib/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ts799kqn
2019-07-04T19:23:33   running bdist_wheel
2019-07-04T19:23:33   running build
2019-07-04T19:23:33   running build_py
2019-07-04T19:23:33   creating build
2019-07-04T19:23:33   creating build/lib.linux-armv7l-3.7
2019-07-04T19:23:33   creating build/lib.linux-armv7l-3.7/seqlib
2019-07-04T19:23:33   copying src/seqlib/__init__.py -> build/lib.linux-armv7l-3.7/seqlib
2019-07-04T19:23:33   running build_ext
2019-07-04T19:23:33   creating tmp
2019-07-04T19:23:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c /tmp/tmpb3qcz5xf.cpp -o tmp/tmpb3qcz5xf.o -std=c++14
2019-07-04T19:23:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c /tmp/tmp9zco9hdu.cpp -o tmp/tmp9zco9hdu.o -fvisibility=hidden
2019-07-04T19:23:33   Running command: ./configure CFLAGS=-fPIC CXXFLAGS=-fPIC
2019-07-04T19:23:35   checking for a BSD-compatible install... /usr/bin/install -c
2019-07-04T19:23:35   checking whether build environment is sane... yes
2019-07-04T19:23:35   /tmp/pip-wheel-tv9q89wc/seqlib/lib/SeqLib/missing: Unknown `--is-lightweight' option
2019-07-04T19:23:35   Try `/tmp/pip-wheel-tv9q89wc/seqlib/lib/SeqLib/missing --help' for more information
2019-07-04T19:23:35   configure: WARNING: 'missing' script is too old or missing
2019-07-04T19:23:35   checking for a thread-safe mkdir -p... /bin/mkdir -p
2019-07-04T19:23:35   checking for gawk... gawk
2019-07-04T19:23:35   checking whether make sets $(MAKE)... yes
2019-07-04T19:23:35   checking whether make supports nested variables... yes
2019-07-04T19:23:35   checking whether to enable maintainer-specific portions of Makefiles... no
2019-07-04T19:23:35   checking for g++... g++
2019-07-04T19:23:36   checking whether the C++ compiler works... yes
2019-07-04T19:23:36   checking for C++ compiler default output file name... a.out
2019-07-04T19:23:36   checking for suffix of executables...
2019-07-04T19:23:37   checking whether we are cross compiling... no
2019-07-04T19:23:37   checking for suffix of object files... o
2019-07-04T19:23:37   checking whether we are using the GNU C++ compiler... yes
2019-07-04T19:23:37   checking whether g++ accepts -g... yes
2019-07-04T19:23:37   checking for style of include used by make... GNU
2019-07-04T19:23:38   checking dependency style of g++... gcc3
2019-07-04T19:23:38   checking for gcc... gcc
2019-07-04T19:23:38   checking whether we are using the GNU C compiler... yes
2019-07-04T19:23:38   checking whether gcc accepts -g... yes
2019-07-04T19:23:38   checking for gcc option to accept ISO C89... none needed
2019-07-04T19:23:38   checking whether gcc understands -c and -o together... yes
2019-07-04T19:23:39   checking dependency style of gcc... gcc3
2019-07-04T19:23:39   checking for ranlib... ranlib
2019-07-04T19:23:39   checking how to run the C++ preprocessor... g++ -E
2019-07-04T19:23:39   checking for grep that handles long lines and -e... /bin/grep
2019-07-04T19:23:39   checking for egrep... /bin/grep -E
2019-07-04T19:23:40   checking for ANSI C header files... yes
2019-07-04T19:23:40   checking for sys/types.h... yes
2019-07-04T19:23:41   checking for sys/stat.h... yes
2019-07-04T19:23:41   checking for stdlib.h... yes
2019-07-04T19:23:41   checking for string.h... yes
2019-07-04T19:23:42   checking for memory.h... yes
2019-07-04T19:23:42   checking for strings.h... yes
2019-07-04T19:23:42   checking for inttypes.h... yes
2019-07-04T19:23:42   checking for stdint.h... yes
2019-07-04T19:23:43   checking for unistd.h... yes
2019-07-04T19:23:43   checking zlib.h usability... yes
2019-07-04T19:23:43   checking zlib.h presence... yes
2019-07-04T19:23:43   checking for zlib.h... yes
2019-07-04T19:23:44   checking for library containing gzopen... -lz
2019-07-04T19:23:45   checking for library containing clock_gettime... none required
2019-07-04T19:23:45   checking that generated files are newer than configure... done
2019-07-04T19:23:45   configure: creating ./config.status
2019-07-04T19:23:46   config.status: creating Makefile
2019-07-04T19:23:46   config.status: creating src/Makefile
2019-07-04T19:23:46   config.status: creating src/seqtools/Makefile
2019-07-04T19:23:46   config.status: creating config.h
2019-07-04T19:23:46   config.status: executing depfiles commands
2019-07-04T19:23:47   Running command: make
2019-07-04T19:23:47   make  all-recursive
2019-07-04T19:23:47   make[1]: Entering directory '/tmp/pip-wheel-tv9q89wc/seqlib/lib/SeqLib'
2019-07-04T19:23:47   Making all in bwa
2019-07-04T19:23:47   make[2]: Entering directory '/tmp/pip-wheel-tv9q89wc/seqlib/lib/SeqLib/bwa'
2019-07-04T19:23:47   gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  utils.c -o utils.o
2019-07-04T19:23:49   gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  kthread.c -o kthread.o
2019-07-04T19:23:50   gcc -c -g -Wall -Wno-unused-function -O2 -fPIC -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS  ksw.c -o ksw.o
2019-07-04T19:23:50   ksw.c:29:10: fatal error: emmintrin.h: No such file or directory
2019-07-04T19:23:50    #include <emmintrin.h>
2019-07-04T19:23:50             ^~~~~~~~~~~~~
2019-07-04T19:23:50   compilation terminated.
2019-07-04T19:23:50   make[2]: *** [Makefile:26: ksw.o] Error 1
2019-07-04T19:23:50   make[2]: Leaving directory '/tmp/pip-wheel-tv9q89wc/seqlib/lib/SeqLib/bwa'
2019-07-04T19:23:50   make[1]: *** [Makefile:358: all-recursive] Error 1
2019-07-04T19:23:50   make[1]: Leaving directory '/tmp/pip-wheel-tv9q89wc/seqlib/lib/SeqLib'
2019-07-04T19:23:50   make: *** [Makefile:299: all] Error 2
2019-07-04T19:23:50   Traceback (most recent call last):
2019-07-04T19:23:50     File "<string>", line 1, in <module>
2019-07-04T19:23:50     File "/tmp/pip-wheel-tv9q89wc/seqlib/setup.py", line 224, in <module>
2019-07-04T19:23:50       zip_safe=False,
2019-07-04T19:23:50     File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 145, in setup
2019-07-04T19:23:50       return distutils.core.setup(**attrs)
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
2019-07-04T19:23:50       dist.run_commands()
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
2019-07-04T19:23:50       self.run_command(cmd)
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2019-07-04T19:23:50       cmd_obj.run()
2019-07-04T19:23:50     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run
2019-07-04T19:23:50       self.run_command('build')
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2019-07-04T19:23:50       self.distribution.run_command(command)
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2019-07-04T19:23:50       cmd_obj.run()
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run
2019-07-04T19:23:50       self.run_command(cmd_name)
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2019-07-04T19:23:50       self.distribution.run_command(command)
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2019-07-04T19:23:50       cmd_obj.run()
2019-07-04T19:23:50     File "/usr/local/lib/python3.7/dist-packages/setuptools/command/build_ext.py", line 78, in run
2019-07-04T19:23:50       _build_ext.run(self)
2019-07-04T19:23:50     File "/usr/lib/python3/dist-packages/Cython/Distutils/old_build_ext.py", line 186, in run
2019-07-04T19:23:50       _build_ext.build_ext.run(self)
2019-07-04T19:23:50     File "/usr/lib/python3.7/distutils/command/build_ext.py", line 340, in run
2019-07-04T19:23:50       self.build_extensions()
2019-07-04T19:23:50     File "/tmp/pip-wheel-tv9q89wc/seqlib/setup.py", line 152, in build_extensions
2019-07-04T19:23:50       build_ext.build_extensions(self)
2019-07-04T19:23:50     File "/usr/lib/python3/dist-packages/Cython/Distutils/old_build_ext.py", line 194, in build_extensions
2019-07-04T19:23:50       self.build_extension(ext)
2019-07-04T19:23:50     File "/tmp/pip-wheel-tv9q89wc/seqlib/setup.py", line 157, in build_extension
2019-07-04T19:23:50       compile_seqlib()
2019-07-04T19:23:50     File "/tmp/pip-wheel-tv9q89wc/seqlib/setup.py", line 74, in compile_seqlib
2019-07-04T19:23:50       check_call("make")
2019-07-04T19:23:50     File "/tmp/pip-wheel-tv9q89wc/seqlib/setup.py", line 26, in check_call
2019-07-04T19:23:50       subprocess.check_call(command, shell=True)
2019-07-04T19:23:50     File "/usr/lib/python3.7/subprocess.py", line 347, in check_call
2019-07-04T19:23:50       raise CalledProcessError(retcode, cmd)
2019-07-04T19:23:50   subprocess.CalledProcessError: Command 'make' returned non-zero exit status 2.
2019-07-04T19:23:50   Building wheel for seqlib (setup.py): finished with status 'error'
2019-07-04T19:23:50   ERROR: Failed building wheel for seqlib
2019-07-04T19:23:50   Running setup.py clean for seqlib
2019-07-04T19:23:50   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-tv9q89wc/seqlib/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-04T19:23:52   running clean
2019-07-04T19:23:52   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-04T19:23:52   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-04T19:23:52   'build/scripts-3.7' does not exist -- can't clean it
2019-07-04T19:23:52   removing 'build'
2019-07-04T19:23:52 Failed to build seqlib
2019-07-04T19:23:52 Cleaning up...
2019-07-04T19:23:52   Removing source in /tmp/pip-wheel-tv9q89wc/seqlib
2019-07-04T19:23:52 Removed build tracker '/tmp/pip-req-tracker-vwrbr07_'
2019-07-04T19:23:52 ERROR: Failed to build one or more wheels
2019-07-04T19:23:52 Exception information:
2019-07-04T19:23:52 Traceback (most recent call last):
2019-07-04T19:23:52   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-04T19:23:52     status = self.run(options, args)
2019-07-04T19:23:52   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-04T19:23:52     "Failed to build one or more wheels"
2019-07-04T19:23:52 pip._internal.exceptions.CommandError: Failed to build one or more wheels