2019-07-05T00:29:25 Created temporary directory: /tmp/pip-ephem-wheel-cache-pbfgggg8
2019-07-05T00:29:25 Created temporary directory: /tmp/pip-req-tracker-kdxgqg6b
2019-07-05T00:29:25 Created requirements tracker '/tmp/pip-req-tracker-kdxgqg6b'
2019-07-05T00:29:25 Created temporary directory: /tmp/pip-wheel-hm1ndutv
2019-07-05T00:29:25 Collecting jcvi==0.7.4
2019-07-05T00:29:25   1 location(s) to search for versions of jcvi:
2019-07-05T00:29:25   * https://pypi.org/simple/jcvi/
2019-07-05T00:29:25   Getting page https://pypi.org/simple/jcvi/
2019-07-05T00:29:25   Analyzing links from page https://pypi.org/simple/jcvi/
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4
2019-07-05T00:29:25     Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12
2019-07-05T00:29:25   Using version 0.7.4 (newest of versions: 0.7.4)
2019-07-05T00:29:25   Created temporary directory: /tmp/pip-unpack-dhlaqkx0
2019-07-05T00:29:25   Downloading https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz (811kB)
2019-07-05T00:29:25   Downloading from URL https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/)
2019-07-05T00:29:26   Added jcvi==0.7.4 from https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 to build tracker '/tmp/pip-req-tracker-kdxgqg6b'
2019-07-05T00:29:26     Running setup.py (path:/tmp/pip-wheel-hm1ndutv/jcvi/setup.py) egg_info for package jcvi
2019-07-05T00:29:26     Running command python setup.py egg_info
2019-07-05T00:29:28     running egg_info
2019-07-05T00:29:28     creating pip-egg-info/jcvi.egg-info
2019-07-05T00:29:28     writing pip-egg-info/jcvi.egg-info/PKG-INFO
2019-07-05T00:29:28     writing dependency_links to pip-egg-info/jcvi.egg-info/dependency_links.txt
2019-07-05T00:29:28     writing requirements to pip-egg-info/jcvi.egg-info/requires.txt
2019-07-05T00:29:28     writing top-level names to pip-egg-info/jcvi.egg-info/top_level.txt
2019-07-05T00:29:28     writing manifest file 'pip-egg-info/jcvi.egg-info/SOURCES.txt'
2019-07-05T00:29:29     reading manifest file 'pip-egg-info/jcvi.egg-info/SOURCES.txt'
2019-07-05T00:29:29     reading manifest template 'MANIFEST.in'
2019-07-05T00:29:29     writing manifest file 'pip-egg-info/jcvi.egg-info/SOURCES.txt'
2019-07-05T00:29:29   Source in /tmp/pip-wheel-hm1ndutv/jcvi has version 0.7.4, which satisfies requirement jcvi==0.7.4 from https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8
2019-07-05T00:29:29   Removed jcvi==0.7.4 from https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 from build tracker '/tmp/pip-req-tracker-kdxgqg6b'
2019-07-05T00:29:29 Building wheels for collected packages: jcvi
2019-07-05T00:29:29   Created temporary directory: /tmp/pip-wheel-qul5e5n_
2019-07-05T00:29:29   Building wheel for jcvi (setup.py): started
2019-07-05T00:29:29   Destination directory: /tmp/pip-wheel-qul5e5n_
2019-07-05T00:29:29   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-hm1ndutv/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qul5e5n_
2019-07-05T00:29:31   running bdist_wheel
2019-07-05T00:29:31   running build
2019-07-05T00:29:31   running build_py
2019-07-05T00:29:31   creating build
2019-07-05T00:29:31   creating build/lib.linux-armv7l-3.7
2019-07-05T00:29:31   creating build/lib.linux-armv7l-3.7/jcvi
2019-07-05T00:29:31   copying ./setup.py -> build/lib.linux-armv7l-3.7/jcvi
2019-07-05T00:29:31   copying ./__init__.py -> build/lib.linux-armv7l-3.7/jcvi
2019-07-05T00:29:31   creating build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   copying ./apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2019-07-05T00:29:31   creating build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   copying ./assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2019-07-05T00:29:31   creating build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:31   copying ./formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   copying ./formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   copying ./variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   copying ./projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   copying ./utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   copying ./annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   copying ./compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   copying ./algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   copying ./graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2019-07-05T00:29:32   creating build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:32   copying ./utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:32   running egg_info
2019-07-05T00:29:32   writing jcvi.egg-info/PKG-INFO
2019-07-05T00:29:32   writing dependency_links to jcvi.egg-info/dependency_links.txt
2019-07-05T00:29:32   writing requirements to jcvi.egg-info/requires.txt
2019-07-05T00:29:32   writing top-level names to jcvi.egg-info/top_level.txt
2019-07-05T00:29:33   reading manifest file 'jcvi.egg-info/SOURCES.txt'
2019-07-05T00:29:33   reading manifest template 'MANIFEST.in'
2019-07-05T00:29:33   writing manifest file 'jcvi.egg-info/SOURCES.txt'
2019-07-05T00:29:33   copying ./utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   copying ./utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2019-07-05T00:29:33   running build_ext
2019-07-05T00:29:33   building 'jcvi.assembly.chic' extension
2019-07-05T00:29:33   creating build/temp.linux-armv7l-3.7
2019-07-05T00:29:33   creating build/temp.linux-armv7l-3.7/assembly
2019-07-05T00:29:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c assembly/chic.c -o build/temp.linux-armv7l-3.7/assembly/chic.o -O3
2019-07-05T00:29:33   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-05T00:29:33                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-05T00:29:33                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-05T00:29:33                    from assembly/chic.c:475:
2019-07-05T00:29:33   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-05T00:29:33    #warning "Using deprecated NumPy API, disable it with " \
2019-07-05T00:29:33     ^~~~~~~
2019-07-05T00:29:34   assembly/chic.c: In function ‘__Pyx__ExceptionSave’:
2019-07-05T00:29:34   assembly/chic.c:8481:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-05T00:29:34        *type = tstate->exc_type;
2019-07-05T00:29:34                        ^~~~~~~~
2019-07-05T00:29:34                        curexc_type
2019-07-05T00:29:34   assembly/chic.c:8482:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-05T00:29:34        *value = tstate->exc_value;
2019-07-05T00:29:34                         ^~~~~~~~~
2019-07-05T00:29:34                         curexc_value
2019-07-05T00:29:34   assembly/chic.c:8483:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-05T00:29:34        *tb = tstate->exc_traceback;
2019-07-05T00:29:34                      ^~~~~~~~~~~~~
2019-07-05T00:29:34                      curexc_traceback
2019-07-05T00:29:34   assembly/chic.c: In function ‘__Pyx__ExceptionReset’:
2019-07-05T00:29:34   assembly/chic.c:8490:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-05T00:29:34        tmp_type = tstate->exc_type;
2019-07-05T00:29:34                           ^~~~~~~~
2019-07-05T00:29:34                           curexc_type
2019-07-05T00:29:34   assembly/chic.c:8491:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-05T00:29:34        tmp_value = tstate->exc_value;
2019-07-05T00:29:34                            ^~~~~~~~~
2019-07-05T00:29:34                            curexc_value
2019-07-05T00:29:34   assembly/chic.c:8492:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-05T00:29:34        tmp_tb = tstate->exc_traceback;
2019-07-05T00:29:34                         ^~~~~~~~~~~~~
2019-07-05T00:29:34                         curexc_traceback
2019-07-05T00:29:34   assembly/chic.c:8493:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-05T00:29:34        tstate->exc_type = type;
2019-07-05T00:29:34                ^~~~~~~~
2019-07-05T00:29:34                curexc_type
2019-07-05T00:29:34   assembly/chic.c:8494:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-05T00:29:34        tstate->exc_value = value;
2019-07-05T00:29:34                ^~~~~~~~~
2019-07-05T00:29:34                curexc_value
2019-07-05T00:29:34   assembly/chic.c:8495:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-05T00:29:34        tstate->exc_traceback = tb;
2019-07-05T00:29:34                ^~~~~~~~~~~~~
2019-07-05T00:29:34                curexc_traceback
2019-07-05T00:29:34   assembly/chic.c: In function ‘__Pyx__GetException’:
2019-07-05T00:29:34   assembly/chic.c:8550:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-05T00:29:34        tmp_type = tstate->exc_type;
2019-07-05T00:29:34                           ^~~~~~~~
2019-07-05T00:29:34                           curexc_type
2019-07-05T00:29:34   assembly/chic.c:8551:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-05T00:29:34        tmp_value = tstate->exc_value;
2019-07-05T00:29:34                            ^~~~~~~~~
2019-07-05T00:29:34                            curexc_value
2019-07-05T00:29:34   assembly/chic.c:8552:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-05T00:29:34        tmp_tb = tstate->exc_traceback;
2019-07-05T00:29:34                         ^~~~~~~~~~~~~
2019-07-05T00:29:34                         curexc_traceback
2019-07-05T00:29:34   assembly/chic.c:8553:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-05T00:29:34        tstate->exc_type = local_type;
2019-07-05T00:29:34                ^~~~~~~~
2019-07-05T00:29:34                curexc_type
2019-07-05T00:29:34   assembly/chic.c:8554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-05T00:29:34        tstate->exc_value = local_value;
2019-07-05T00:29:34                ^~~~~~~~~
2019-07-05T00:29:34                curexc_value
2019-07-05T00:29:34   assembly/chic.c:8555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-05T00:29:34        tstate->exc_traceback = local_tb;
2019-07-05T00:29:34                ^~~~~~~~~~~~~
2019-07-05T00:29:34                curexc_traceback
2019-07-05T00:29:34   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-07-05T00:29:34   Building wheel for jcvi (setup.py): finished with status 'error'
2019-07-05T00:29:34   ERROR: Failed building wheel for jcvi
2019-07-05T00:29:34   Running setup.py clean for jcvi
2019-07-05T00:29:34   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-hm1ndutv/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-05T00:29:36   running clean
2019-07-05T00:29:36   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-07-05T00:29:36   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-05T00:29:36   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-05T00:29:36   'build/scripts-3.7' does not exist -- can't clean it
2019-07-05T00:29:36   removing 'build'
2019-07-05T00:29:36 Failed to build jcvi
2019-07-05T00:29:36 Cleaning up...
2019-07-05T00:29:36   Removing source in /tmp/pip-wheel-hm1ndutv/jcvi
2019-07-05T00:29:36 Removed build tracker '/tmp/pip-req-tracker-kdxgqg6b'
2019-07-05T00:29:36 ERROR: Failed to build one or more wheels
2019-07-05T00:29:36 Exception information:
2019-07-05T00:29:36 Traceback (most recent call last):
2019-07-05T00:29:36   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-05T00:29:36     status = self.run(options, args)
2019-07-05T00:29:36   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-05T00:29:36     "Failed to build one or more wheels"
2019-07-05T00:29:36 pip._internal.exceptions.CommandError: Failed to build one or more wheels