2019-07-05T03:02:57 Created temporary directory: /tmp/pip-ephem-wheel-cache-z_e7xm8o 2019-07-05T03:02:57 Created temporary directory: /tmp/pip-req-tracker-8s8tuy_p 2019-07-05T03:02:57 Created requirements tracker '/tmp/pip-req-tracker-8s8tuy_p' 2019-07-05T03:02:57 Created temporary directory: /tmp/pip-wheel-21zbzhz5 2019-07-05T03:02:57 Collecting hapflk==1.3.3 2019-07-05T03:02:57 1 location(s) to search for versions of hapflk: 2019-07-05T03:02:57 * https://pypi.org/simple/hapflk/ 2019-07-05T03:02:57 Getting page https://pypi.org/simple/hapflk/ 2019-07-05T03:02:57 Analyzing links from page https://pypi.org/simple/hapflk/ 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/b2/ad/85999140cbc66853d701f214fd6548aab07dc46fe29c2d8632c332e97689/hapflk-1.3.2.tar.gz#sha256=762e84e00cafa571fff57a3b4d3e1629c8ae5fe4993db5fe01e661260bea478b (from https://pypi.org/simple/hapflk/), version: 1.3.2 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz#sha256=8e25c697cc9011b6f24fa1e6a717e826b32f859f2ea1c4ea31b45b59637747a4 (from https://pypi.org/simple/hapflk/), version: 1.3.3 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/63/d9/33d91f8a3376ab13ffc0a102caa32a2332fccda2db96009f7cf317593e1b/hapflk-1.3.4.tar.gz#sha256=94978b55fb4524edfc6c8323462ac1eaf642d82877f4a989ad91fdef488cd9b3 (from https://pypi.org/simple/hapflk/), version: 1.3.4 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz#sha256=b8a820ff6c1decd86dd5da4b51af53e87bbd4c10863578b850744ee6bf6ad8ce (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev0 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/6b/81/cc8f04f774e8728b5167bc58ae12eb4fb2125b784a395fdfefb3e78f7733/hapflk-1.3.5.dev1.tar.gz#sha256=a9f1c95349696779a5c5b08ca3cdcc19528958e38ff8e52caff9101b3fc1f03c (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev1 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/f8/34/1bd9c49ea13e6be4afec643acfe9f960ae6714fea4d5499a75988e81663e/hapflk-1.3.5.dev2.tar.gz#sha256=bb1897647df2aea1c49041732a6c401ca4bf006c4e20e0eefd135e55c3aad2c4 (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev2 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/96/14/256f0eda9b570de3b48a7fcff1d062ab7694bd32e7f2ad7ef8bd483b926f/hapflk-1.3.5.dev3.tar.gz#sha256=95144c003c0d193ed76deaa5a4ad07161e71859e65fa4d60954306a3bf0c4754 (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev3 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/aa/c6/c72917e6d4492061b47104c7922b0368c38be20b87bf3e0553d8824a9cfe/hapflk-1.3.5.dev4.tar.gz#sha256=9387bff556d37ced3f0ef3d368f76281226496af14a39499560cb51158d6d520 (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev4 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz#sha256=c76e80a664b5d2b2778b02ba9b2e263a55dcd4f0281e48ab90a5c11c97ed9bb6 (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev5 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/5c/f9/f5bd0ea0712da4d11795fda5b40c44be0421a85d6b05f8e9687ce30b8089/hapflk-1.3.5.tar.gz#sha256=e49a28deb1d52470c6b6c5c27d85ad81d5076953c0ba80cac1cadd81733e2831 (from https://pypi.org/simple/hapflk/), version: 1.3.5 2019-07-05T03:02:57 Found link https://files.pythonhosted.org/packages/51/c4/ed7b823aa136185d750d60f53268cfb6804dcc87183dbe216135e63aa583/hapflk-1.4.tar.gz#sha256=ac2591a80b4ca382b520344a1b47c3b950e68b7d32d9662fc2a88c136de72823 (from https://pypi.org/simple/hapflk/), version: 1.4 2019-07-05T03:02:57 Using version 1.3.3 (newest of versions: 1.3.3) 2019-07-05T03:02:57 Created temporary directory: /tmp/pip-unpack-a4fx6y09 2019-07-05T03:02:57 Downloading https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz (276kB) 2019-07-05T03:02:57 Downloading from URL https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz#sha256=8e25c697cc9011b6f24fa1e6a717e826b32f859f2ea1c4ea31b45b59637747a4 (from https://pypi.org/simple/hapflk/) 2019-07-05T03:02:57 Added hapflk==1.3.3 from https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz#sha256=8e25c697cc9011b6f24fa1e6a717e826b32f859f2ea1c4ea31b45b59637747a4 to build tracker '/tmp/pip-req-tracker-8s8tuy_p' 2019-07-05T03:02:57 Running setup.py (path:/tmp/pip-wheel-21zbzhz5/hapflk/setup.py) egg_info for package hapflk 2019-07-05T03:02:57 Running command python setup.py egg_info 2019-07-05T03:02:59 running egg_info 2019-07-05T03:02:59 creating pip-egg-info/hapflk.egg-info 2019-07-05T03:02:59 writing pip-egg-info/hapflk.egg-info/PKG-INFO 2019-07-05T03:02:59 writing dependency_links to pip-egg-info/hapflk.egg-info/dependency_links.txt 2019-07-05T03:02:59 writing top-level names to pip-egg-info/hapflk.egg-info/top_level.txt 2019-07-05T03:02:59 writing manifest file 'pip-egg-info/hapflk.egg-info/SOURCES.txt' 2019-07-05T03:03:00 reading manifest file 'pip-egg-info/hapflk.egg-info/SOURCES.txt' 2019-07-05T03:03:00 reading manifest template 'MANIFEST.in' 2019-07-05T03:03:00 writing manifest file 'pip-egg-info/hapflk.egg-info/SOURCES.txt' 2019-07-05T03:03:00 Source in /tmp/pip-wheel-21zbzhz5/hapflk has version 1.3.3, which satisfies requirement hapflk==1.3.3 from https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz#sha256=8e25c697cc9011b6f24fa1e6a717e826b32f859f2ea1c4ea31b45b59637747a4 2019-07-05T03:03:00 Removed hapflk==1.3.3 from https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz#sha256=8e25c697cc9011b6f24fa1e6a717e826b32f859f2ea1c4ea31b45b59637747a4 from build tracker '/tmp/pip-req-tracker-8s8tuy_p' 2019-07-05T03:03:00 Building wheels for collected packages: hapflk 2019-07-05T03:03:00 Created temporary directory: /tmp/pip-wheel-89099rbo 2019-07-05T03:03:00 Building wheel for hapflk (setup.py): started 2019-07-05T03:03:00 Destination directory: /tmp/pip-wheel-89099rbo 2019-07-05T03:03:00 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-21zbzhz5/hapflk/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-89099rbo 2019-07-05T03:03:02 running bdist_wheel 2019-07-05T03:03:02 running build 2019-07-05T03:03:02 running build_py 2019-07-05T03:03:02 creating build 2019-07-05T03:03:02 creating build/lib.linux-armv7l-3.7 2019-07-05T03:03:02 creating build/lib.linux-armv7l-3.7/fastphase 2019-07-05T03:03:02 copying fastphase/__init__.py -> build/lib.linux-armv7l-3.7/fastphase 2019-07-05T03:03:02 creating build/lib.linux-armv7l-3.7/hapflk 2019-07-05T03:03:02 copying hapflk/__init__.py -> build/lib.linux-armv7l-3.7/hapflk 2019-07-05T03:03:02 copying hapflk/popgen.py -> build/lib.linux-armv7l-3.7/hapflk 2019-07-05T03:03:02 copying hapflk/nj.py -> build/lib.linux-armv7l-3.7/hapflk 2019-07-05T03:03:02 copying hapflk/data.py -> build/lib.linux-armv7l-3.7/hapflk 2019-07-05T03:03:02 copying hapflk/InputOutput.py -> build/lib.linux-armv7l-3.7/hapflk 2019-07-05T03:03:02 running build_ext 2019-07-05T03:03:03 building 'fastphase.fastphaseCython' extension 2019-07-05T03:03:03 creating build/temp.linux-armv7l-3.7 2019-07-05T03:03:03 creating build/temp.linux-armv7l-3.7/fastphase 2019-07-05T03:03:03 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c fastphase/fastphaseCython.c -o build/temp.linux-armv7l-3.7/fastphase/fastphaseCython.o 2019-07-05T03:03:03 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-07-05T03:03:03 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-07-05T03:03:03 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-05T03:03:03 from fastphase/fastphaseCython.c:242: 2019-07-05T03:03:03 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-07-05T03:03:03 #warning "Using deprecated NumPy API, disable it with " \ 2019-07-05T03:03:03 ^~~~~~~ 2019-07-05T03:03:05 fastphase/fastphaseCython.c: In function ‘__Pyx_ExceptionSave’: 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16540:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-07-05T03:03:05 *type = tstate->exc_type; 2019-07-05T03:03:05 ^~~~~~~~ 2019-07-05T03:03:05 curexc_type 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16541:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-07-05T03:03:05 *value = tstate->exc_value; 2019-07-05T03:03:05 ^~~~~~~~~ 2019-07-05T03:03:05 curexc_value 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16542:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-07-05T03:03:05 *tb = tstate->exc_traceback; 2019-07-05T03:03:05 ^~~~~~~~~~~~~ 2019-07-05T03:03:05 curexc_traceback 2019-07-05T03:03:05 fastphase/fastphaseCython.c: In function ‘__Pyx_ExceptionReset’: 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16554:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-07-05T03:03:05 tmp_type = tstate->exc_type; 2019-07-05T03:03:05 ^~~~~~~~ 2019-07-05T03:03:05 curexc_type 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16555:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-07-05T03:03:05 tmp_value = tstate->exc_value; 2019-07-05T03:03:05 ^~~~~~~~~ 2019-07-05T03:03:05 curexc_value 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16556:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-07-05T03:03:05 tmp_tb = tstate->exc_traceback; 2019-07-05T03:03:05 ^~~~~~~~~~~~~ 2019-07-05T03:03:05 curexc_traceback 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16557:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-07-05T03:03:05 tstate->exc_type = type; 2019-07-05T03:03:05 ^~~~~~~~ 2019-07-05T03:03:05 curexc_type 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16558:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-07-05T03:03:05 tstate->exc_value = value; 2019-07-05T03:03:05 ^~~~~~~~~ 2019-07-05T03:03:05 curexc_value 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16559:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-07-05T03:03:05 tstate->exc_traceback = tb; 2019-07-05T03:03:05 ^~~~~~~~~~~~~ 2019-07-05T03:03:05 curexc_traceback 2019-07-05T03:03:05 fastphase/fastphaseCython.c: In function ‘__Pyx_GetException’: 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16602:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-07-05T03:03:05 tmp_type = tstate->exc_type; 2019-07-05T03:03:05 ^~~~~~~~ 2019-07-05T03:03:05 curexc_type 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16603:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-07-05T03:03:05 tmp_value = tstate->exc_value; 2019-07-05T03:03:05 ^~~~~~~~~ 2019-07-05T03:03:05 curexc_value 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16604:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-07-05T03:03:05 tmp_tb = tstate->exc_traceback; 2019-07-05T03:03:05 ^~~~~~~~~~~~~ 2019-07-05T03:03:05 curexc_traceback 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16605:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2019-07-05T03:03:05 tstate->exc_type = local_type; 2019-07-05T03:03:05 ^~~~~~~~ 2019-07-05T03:03:05 curexc_type 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16606:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2019-07-05T03:03:05 tstate->exc_value = local_value; 2019-07-05T03:03:05 ^~~~~~~~~ 2019-07-05T03:03:05 curexc_value 2019-07-05T03:03:05 fastphase/fastphaseCython.c:16607:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2019-07-05T03:03:05 tstate->exc_traceback = local_tb; 2019-07-05T03:03:05 ^~~~~~~~~~~~~ 2019-07-05T03:03:05 curexc_traceback 2019-07-05T03:03:06 error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1 2019-07-05T03:03:06 Building wheel for hapflk (setup.py): finished with status 'error' 2019-07-05T03:03:06 ERROR: Failed building wheel for hapflk 2019-07-05T03:03:06 Running setup.py clean for hapflk 2019-07-05T03:03:06 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-21zbzhz5/hapflk/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2019-07-05T03:03:08 running clean 2019-07-05T03:03:08 removing 'build/temp.linux-armv7l-3.7' (and everything under it) 2019-07-05T03:03:08 removing 'build/lib.linux-armv7l-3.7' (and everything under it) 2019-07-05T03:03:08 'build/bdist.linux-armv7l' does not exist -- can't clean it 2019-07-05T03:03:08 'build/scripts-3.7' does not exist -- can't clean it 2019-07-05T03:03:08 removing 'build' 2019-07-05T03:03:08 Failed to build hapflk 2019-07-05T03:03:08 Cleaning up... 2019-07-05T03:03:08 Removing source in /tmp/pip-wheel-21zbzhz5/hapflk 2019-07-05T03:03:08 Removed build tracker '/tmp/pip-req-tracker-8s8tuy_p' 2019-07-05T03:03:08 ERROR: Failed to build one or more wheels 2019-07-05T03:03:08 Exception information: 2019-07-05T03:03:08 Traceback (most recent call last): 2019-07-05T03:03:08 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main 2019-07-05T03:03:08 status = self.run(options, args) 2019-07-05T03:03:08 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2019-07-05T03:03:08 "Failed to build one or more wheels" 2019-07-05T03:03:08 pip._internal.exceptions.CommandError: Failed to build one or more wheels