2019-07-05T10:54:17 Created temporary directory: /tmp/pip-ephem-wheel-cache-2p23y_45
2019-07-05T10:54:17 Created temporary directory: /tmp/pip-req-tracker-utqhmt3y
2019-07-05T10:54:17 Created requirements tracker '/tmp/pip-req-tracker-utqhmt3y'
2019-07-05T10:54:17 Created temporary directory: /tmp/pip-wheel-x6zuhiu7
2019-07-05T10:54:17 Collecting tredparse==0.7.8
2019-07-05T10:54:17   1 location(s) to search for versions of tredparse:
2019-07-05T10:54:17   * https://pypi.org/simple/tredparse/
2019-07-05T10:54:17   Getting page https://pypi.org/simple/tredparse/
2019-07-05T10:54:17   Analyzing links from page https://pypi.org/simple/tredparse/
2019-07-05T10:54:17     Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 (from https://pypi.org/simple/tredparse/), version: 0.7.5
2019-07-05T10:54:17     Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 (from https://pypi.org/simple/tredparse/), version: 0.7.6
2019-07-05T10:54:17     Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz#sha256=1aa435d1679ccc2d821e33c2a38fc626bba88178961dd2c8ab8ef761cd3846fc (from https://pypi.org/simple/tredparse/), version: 0.7.7
2019-07-05T10:54:17     Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/), version: 0.7.8
2019-07-05T10:54:17   Using version 0.7.8 (newest of versions: 0.7.8)
2019-07-05T10:54:17   Created temporary directory: /tmp/pip-unpack-w9b8czh4
2019-07-05T10:54:17   Downloading https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz (247kB)
2019-07-05T10:54:17   Downloading from URL https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/)
2019-07-05T10:54:17   Added tredparse==0.7.8 from https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd to build tracker '/tmp/pip-req-tracker-utqhmt3y'
2019-07-05T10:54:17     Running setup.py (path:/tmp/pip-wheel-x6zuhiu7/tredparse/setup.py) egg_info for package tredparse
2019-07-05T10:54:17     Running command python setup.py egg_info
2019-07-05T10:54:19     running egg_info
2019-07-05T10:54:19     creating pip-egg-info/tredparse.egg-info
2019-07-05T10:54:19     writing pip-egg-info/tredparse.egg-info/PKG-INFO
2019-07-05T10:54:19     writing dependency_links to pip-egg-info/tredparse.egg-info/dependency_links.txt
2019-07-05T10:54:19     writing requirements to pip-egg-info/tredparse.egg-info/requires.txt
2019-07-05T10:54:19     writing top-level names to pip-egg-info/tredparse.egg-info/top_level.txt
2019-07-05T10:54:19     writing manifest file 'pip-egg-info/tredparse.egg-info/SOURCES.txt'
2019-07-05T10:54:20     reading manifest file 'pip-egg-info/tredparse.egg-info/SOURCES.txt'
2019-07-05T10:54:20     reading manifest template 'MANIFEST.in'
2019-07-05T10:54:20     writing manifest file 'pip-egg-info/tredparse.egg-info/SOURCES.txt'
2019-07-05T10:54:20     Maybe try:

2019-07-05T10:54:20         sudo apt-get install pandoc
2019-07-05T10:54:20     See http://johnmacfarlane.net/pandoc/installing.html
2019-07-05T10:54:20     for installation options
2019-07-05T10:54:20     ---------------------------------------------------------------

2019-07-05T10:54:20   Source in /tmp/pip-wheel-x6zuhiu7/tredparse has version 0.7.8, which satisfies requirement tredparse==0.7.8 from https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd
2019-07-05T10:54:20   Removed tredparse==0.7.8 from https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd from build tracker '/tmp/pip-req-tracker-utqhmt3y'
2019-07-05T10:54:20 Building wheels for collected packages: tredparse
2019-07-05T10:54:20   Created temporary directory: /tmp/pip-wheel-u_xa40tk
2019-07-05T10:54:20   Building wheel for tredparse (setup.py): started
2019-07-05T10:54:20   Destination directory: /tmp/pip-wheel-u_xa40tk
2019-07-05T10:54:20   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-x6zuhiu7/tredparse/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u_xa40tk
2019-07-05T10:54:22   Maybe try:

2019-07-05T10:54:22       sudo apt-get install pandoc
2019-07-05T10:54:22   See http://johnmacfarlane.net/pandoc/installing.html
2019-07-05T10:54:22   for installation options
2019-07-05T10:54:22   ---------------------------------------------------------------

2019-07-05T10:54:22   running bdist_wheel
2019-07-05T10:54:22   running build
2019-07-05T10:54:22   running build_py
2019-07-05T10:54:22   creating build
2019-07-05T10:54:22   creating build/lib.linux-armv7l-3.7
2019-07-05T10:54:22   creating build/lib.linux-armv7l-3.7/ssw
2019-07-05T10:54:22   copying src/__init__.py -> build/lib.linux-armv7l-3.7/ssw
2019-07-05T10:54:22   copying src/ssw_wrap.py -> build/lib.linux-armv7l-3.7/ssw
2019-07-05T10:54:22   creating build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/bam_parser.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/tred.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/utils.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/models.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/meta.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/tredplot.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/__init__.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/jcvi.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   copying tredparse/tredreport.py -> build/lib.linux-armv7l-3.7/tredparse
2019-07-05T10:54:22   running egg_info
2019-07-05T10:54:22   writing tredparse.egg-info/PKG-INFO
2019-07-05T10:54:22   writing dependency_links to tredparse.egg-info/dependency_links.txt
2019-07-05T10:54:22   writing requirements to tredparse.egg-info/requires.txt
2019-07-05T10:54:22   writing top-level names to tredparse.egg-info/top_level.txt
2019-07-05T10:54:22   reading manifest file 'tredparse.egg-info/SOURCES.txt'
2019-07-05T10:54:22   reading manifest template 'MANIFEST.in'
2019-07-05T10:54:22   writing manifest file 'tredparse.egg-info/SOURCES.txt'
2019-07-05T10:54:22   creating build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:22   copying tredparse/data/HLI_bams.csv.gz -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:22   copying tredparse/data/TREDs.alts.csv -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:23   copying tredparse/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:23   copying tredparse/data/chrY.hg19.unique_ccn.gc -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:23   copying tredparse/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:23   copying tredparse/data/illumina_v3.pcrfree.stepmodel -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:23   copying tredparse/data/illumina_v3.pcrfree.stuttermodel -> build/lib.linux-armv7l-3.7/tredparse/data
2019-07-05T10:54:23   copying src/ssw.c -> build/lib.linux-armv7l-3.7/ssw
2019-07-05T10:54:23   copying src/ssw.h -> build/lib.linux-armv7l-3.7/ssw
2019-07-05T10:54:23   running build_ext
2019-07-05T10:54:23   building 'libssw' extension
2019-07-05T10:54:23   creating build/temp.linux-armv7l-3.7
2019-07-05T10:54:23   creating build/temp.linux-armv7l-3.7/src
2019-07-05T10:54:23   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.7m -c src/ssw.c -o build/temp.linux-armv7l-3.7/src/ssw.o
2019-07-05T10:54:23   src/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2019-07-05T10:54:23    #include <emmintrin.h>
2019-07-05T10:54:23             ^~~~~~~~~~~~~
2019-07-05T10:54:23   compilation terminated.
2019-07-05T10:54:23   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-07-05T10:54:23   Building wheel for tredparse (setup.py): finished with status 'error'
2019-07-05T10:54:23   ERROR: Failed building wheel for tredparse
2019-07-05T10:54:23   Running setup.py clean for tredparse
2019-07-05T10:54:23   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-x6zuhiu7/tredparse/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-05T10:54:24   Maybe try:

2019-07-05T10:54:24       sudo apt-get install pandoc
2019-07-05T10:54:24   See http://johnmacfarlane.net/pandoc/installing.html
2019-07-05T10:54:24   for installation options
2019-07-05T10:54:24   ---------------------------------------------------------------

2019-07-05T10:54:25   running clean
2019-07-05T10:54:25   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-07-05T10:54:25   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-05T10:54:25   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-05T10:54:25   'build/scripts-3.7' does not exist -- can't clean it
2019-07-05T10:54:25   removing 'build'
2019-07-05T10:54:25 Failed to build tredparse
2019-07-05T10:54:25 Cleaning up...
2019-07-05T10:54:25   Removing source in /tmp/pip-wheel-x6zuhiu7/tredparse
2019-07-05T10:54:25 Removed build tracker '/tmp/pip-req-tracker-utqhmt3y'
2019-07-05T10:54:25 ERROR: Failed to build one or more wheels
2019-07-05T10:54:25 Exception information:
2019-07-05T10:54:25 Traceback (most recent call last):
2019-07-05T10:54:25   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-05T10:54:25     status = self.run(options, args)
2019-07-05T10:54:25   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-05T10:54:25     "Failed to build one or more wheels"
2019-07-05T10:54:25 pip._internal.exceptions.CommandError: Failed to build one or more wheels