2019-07-06T21:48:32 Created temporary directory: /tmp/pip-ephem-wheel-cache-t6zb7k_9
2019-07-06T21:48:32 Created temporary directory: /tmp/pip-req-tracker-_zkxz5qc
2019-07-06T21:48:32 Created requirements tracker '/tmp/pip-req-tracker-_zkxz5qc'
2019-07-06T21:48:32 Created temporary directory: /tmp/pip-wheel-ht6q_ehy
2019-07-06T21:48:32 Collecting mitos==2.0.1
2019-07-06T21:48:33   1 location(s) to search for versions of mitos:
2019-07-06T21:48:33   * https://pypi.org/simple/mitos/
2019-07-06T21:48:33   Getting page https://pypi.org/simple/mitos/
2019-07-06T21:48:33   Analyzing links from page https://pypi.org/simple/mitos/
2019-07-06T21:48:33     Skipping link https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl#sha256=8231d691ae63545671137f78273b95ecb414c2d741f76d9246bd46c3db4fe1ce (from https://pypi.org/simple/mitos/); it is not compatible with this Python
2019-07-06T21:48:33     Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz#sha256=222d58b100e37887a073129ed79850526188511853b780dd3d11fc9a03c5f61c (from https://pypi.org/simple/mitos/), version: 1.0
2019-07-06T21:48:33     Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz#sha256=de00eecb47f5a67c4a27104c87b4d6e26f1c9eddc86369864f7aed1b486c21c6 (from https://pypi.org/simple/mitos/), version: 1.0.1
2019-07-06T21:48:33     Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 (from https://pypi.org/simple/mitos/), version: 2.0.1
2019-07-06T21:48:33   Using version 2.0.1 (newest of versions: 2.0.1)
2019-07-06T21:48:33   Created temporary directory: /tmp/pip-unpack-rs1mh1n8
2019-07-06T21:48:33   Downloading https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (307kB)
2019-07-06T21:48:33   Downloading from URL https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 (from https://pypi.org/simple/mitos/)
2019-07-06T21:48:33   Added mitos==2.0.1 from https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 to build tracker '/tmp/pip-req-tracker-_zkxz5qc'
2019-07-06T21:48:33     Running setup.py (path:/tmp/pip-wheel-ht6q_ehy/mitos/setup.py) egg_info for package mitos
2019-07-06T21:48:33     Running command python setup.py egg_info
2019-07-06T21:48:35     running egg_info
2019-07-06T21:48:35     creating pip-egg-info/mitos.egg-info
2019-07-06T21:48:35     writing dependency_links to pip-egg-info/mitos.egg-info/dependency_links.txt
2019-07-06T21:48:35     writing pip-egg-info/mitos.egg-info/PKG-INFO
2019-07-06T21:48:35     writing requirements to pip-egg-info/mitos.egg-info/requires.txt
2019-07-06T21:48:35     writing top-level names to pip-egg-info/mitos.egg-info/top_level.txt
2019-07-06T21:48:35     writing manifest file 'pip-egg-info/mitos.egg-info/SOURCES.txt'
2019-07-06T21:48:35     reading manifest file 'pip-egg-info/mitos.egg-info/SOURCES.txt'
2019-07-06T21:48:35     reading manifest template 'MANIFEST.in'
2019-07-06T21:48:35     warning: no files found matching 'mitos/codons/gc.prt'
2019-07-06T21:48:35     writing manifest file 'pip-egg-info/mitos.egg-info/SOURCES.txt'
2019-07-06T21:48:36   Source in /tmp/pip-wheel-ht6q_ehy/mitos has version 2.0.1, which satisfies requirement mitos==2.0.1 from https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099
2019-07-06T21:48:36   Removed mitos==2.0.1 from https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 from build tracker '/tmp/pip-req-tracker-_zkxz5qc'
2019-07-06T21:48:36 Building wheels for collected packages: mitos
2019-07-06T21:48:36   Created temporary directory: /tmp/pip-wheel-1w2i_zle
2019-07-06T21:48:36   Building wheel for mitos (setup.py): started
2019-07-06T21:48:36   Destination directory: /tmp/pip-wheel-1w2i_zle
2019-07-06T21:48:36   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ht6q_ehy/mitos/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1w2i_zle
2019-07-06T21:48:37   running bdist_wheel
2019-07-06T21:48:37   running build
2019-07-06T21:48:37   running build_py
2019-07-06T21:48:38   creating build
2019-07-06T21:48:38   creating build/lib
2019-07-06T21:48:38   creating build/lib/mitos
2019-07-06T21:48:38   copying mitos/cmsearch_parse_separate.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/ogre-geneorder.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/mitos-extension2.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/mitoscs.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/inihit.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/trnadist.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/mitos-extension.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/get-wancy.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/booreparser.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/prepareFiles.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/mumcmp.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/CONFIG.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/convert_tree.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/create_prot_fasta.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/removegene.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/trnascan_parse_separate.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/codoncount.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/__init__.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/update-mitolog.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/mitoch_revisions.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/skew.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/names.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/merge_results.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/trna-cm.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/update-blastdb.py -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/mitoloc.py -> build/lib/mitos
2019-07-06T21:48:38   creating build/lib/mitos/update
2019-07-06T21:48:38   copying mitos/update/__init__.py -> build/lib/mitos/update
2019-07-06T21:48:38   creating build/lib/mitos/rna
2019-07-06T21:48:38   copying mitos/rna/vienna.py -> build/lib/mitos/rna
2019-07-06T21:48:38   copying mitos/rna/__init__.py -> build/lib/mitos/rna
2019-07-06T21:48:38   copying mitos/rna/forester.py -> build/lib/mitos/rna
2019-07-06T21:48:38   creating build/lib/mitos/feature
2019-07-06T21:48:38   copying mitos/feature/__init__.py -> build/lib/mitos/feature
2019-07-06T21:48:38   creating build/lib/mitos/draw
2019-07-06T21:48:38   copying mitos/draw/__init__.py -> build/lib/mitos/draw
2019-07-06T21:48:38   creating build/lib/mitos/gb
2019-07-06T21:48:38   copying mitos/gb/__init__.py -> build/lib/mitos/gb
2019-07-06T21:48:38   copying mitos/gb/unify.py -> build/lib/mitos/gb
2019-07-06T21:48:38   creating build/lib/mitos/mitofile
2019-07-06T21:48:38   copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile
2019-07-06T21:48:38   creating build/lib/mitos/mito
2019-07-06T21:48:38   copying mitos/mito/__init__.py -> build/lib/mitos/mito
2019-07-06T21:48:38   creating build/lib/mitos/bedfile
2019-07-06T21:48:38   copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile
2019-07-06T21:48:38   creating build/lib/mitos/tbl
2019-07-06T21:48:38   copying mitos/tbl/__init__.py -> build/lib/mitos/tbl
2019-07-06T21:48:38   creating build/lib/mitos/gfffile
2019-07-06T21:48:38   copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile
2019-07-06T21:48:38   creating build/lib/mitos/tax
2019-07-06T21:48:38   copying mitos/tax/__init__.py -> build/lib/mitos/tax
2019-07-06T21:48:38   creating build/lib/mitos/webserver
2019-07-06T21:48:38   copying mitos/webserver/__init__.py -> build/lib/mitos/webserver
2019-07-06T21:48:38   creating build/lib/mitos/mitfi
2019-07-06T21:48:38   copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi
2019-07-06T21:48:38   creating build/lib/mitos/mergefeature
2019-07-06T21:48:38   copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature
2019-07-06T21:48:38   creating build/lib/mitos/sequence
2019-07-06T21:48:38   copying mitos/sequence/__init__.py -> build/lib/mitos/sequence
2019-07-06T21:48:38   copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence
2019-07-06T21:48:38   creating build/lib/mitos/sequin
2019-07-06T21:48:38   copying mitos/sequin/__init__.py -> build/lib/mitos/sequin
2019-07-06T21:48:38   creating build/lib/mitos/trna
2019-07-06T21:48:38   copying mitos/trna/trnascan.py -> build/lib/mitos/trna
2019-07-06T21:48:38   copying mitos/trna/__init__.py -> build/lib/mitos/trna
2019-07-06T21:48:38   copying mitos/trna/arwenscan.py -> build/lib/mitos/trna
2019-07-06T21:48:38   creating build/lib/mitos/protfeat
2019-07-06T21:48:38   copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat
2019-07-06T21:48:38   creating build/lib/mitos/extprog
2019-07-06T21:48:38   copying mitos/extprog/__init__.py -> build/lib/mitos/extprog
2019-07-06T21:48:38   creating build/lib/mitos/blast
2019-07-06T21:48:38   copying mitos/blast/__init__.py -> build/lib/mitos/blast
2019-07-06T21:48:38   running egg_info
2019-07-06T21:48:38   writing dependency_links to mitos.egg-info/dependency_links.txt
2019-07-06T21:48:38   writing requirements to mitos.egg-info/requires.txt
2019-07-06T21:48:38   writing mitos.egg-info/PKG-INFO
2019-07-06T21:48:38   writing top-level names to mitos.egg-info/top_level.txt
2019-07-06T21:48:38   reading manifest file 'mitos.egg-info/SOURCES.txt'
2019-07-06T21:48:38   reading manifest template 'MANIFEST.in'
2019-07-06T21:48:38   warning: no files found matching 'mitos/codons/gc.prt'
2019-07-06T21:48:38   writing manifest file 'mitos.egg-info/SOURCES.txt'
2019-07-06T21:48:38   copying mitos/plotprot.R -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/plotrna.R -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/plotstst.R -> build/lib/mitos
2019-07-06T21:48:38   copying mitos/webserver/help.txt -> build/lib/mitos/webserver
2019-07-06T21:48:38   copying mitos/webserver/history.txt -> build/lib/mitos/webserver
2019-07-06T21:48:38   copying mitos/webserver/index.txt -> build/lib/mitos/webserver
2019-07-06T21:48:38   copying mitos/webserver/news.txt -> build/lib/mitos/webserver
2019-07-06T21:48:38   copying mitos/webserver/upload.txt -> build/lib/mitos/webserver
2019-07-06T21:48:38   copying mitos/webserver/wait.txt -> build/lib/mitos/webserver
2019-07-06T21:48:38   creating build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser
2019-07-06T21:48:38   running build_scripts
2019-07-06T21:48:38   creating build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting runmitos.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting analyse.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting gcpp.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting geneorder.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting getfeatures.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting getinfo.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting refseqsplit.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting subseq.py -> build/scripts-3.5
2019-07-06T21:48:38   copying and adjusting taxtree.py -> build/scripts-3.5
2019-07-06T21:48:38   copying mitos/plotprot.R -> build/scripts-3.5
2019-07-06T21:48:38   copying mitos/plotstst.R -> build/scripts-3.5
2019-07-06T21:48:38   copying mitos/plotrna.R -> build/scripts-3.5
2019-07-06T21:48:38   changing mode of build/scripts-3.5/runmitos.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/analyse.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/gcpp.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/geneorder.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/getfeatures.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/getinfo.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/refseqsplit.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/subseq.py from 644 to 755
2019-07-06T21:48:38   changing mode of build/scripts-3.5/taxtree.py from 644 to 755
2019-07-06T21:48:38   installing to build/bdist.linux-armv7l/wheel
2019-07-06T21:48:38   running install
2019-07-06T21:48:38   running install_lib
2019-07-06T21:48:38   creating build/bdist.linux-armv7l
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/update
2019-07-06T21:48:38   copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update
2019-07-06T21:48:38   copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/rna
2019-07-06T21:48:38   copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2019-07-06T21:48:38   copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2019-07-06T21:48:38   copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/feature
2019-07-06T21:48:38   copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature
2019-07-06T21:48:38   copying build/lib/mitos/mitoscs.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/draw
2019-07-06T21:48:38   copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/gb
2019-07-06T21:48:38   copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2019-07-06T21:48:38   copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/mitofile
2019-07-06T21:48:38   copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile
2019-07-06T21:48:38   copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/mito
2019-07-06T21:48:38   copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito
2019-07-06T21:48:38   copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/bedfile
2019-07-06T21:48:38   copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/tbl
2019-07-06T21:48:38   copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl
2019-07-06T21:48:38   copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/gfffile
2019-07-06T21:48:38   copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile
2019-07-06T21:48:38   copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/tax
2019-07-06T21:48:38   copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2019-07-06T21:48:38   copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/mitfi
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2019-07-06T21:48:38   copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/mergefeature
2019-07-06T21:48:38   copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature
2019-07-06T21:48:38   copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/sequence
2019-07-06T21:48:38   copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2019-07-06T21:48:38   copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/sequin
2019-07-06T21:48:38   copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin
2019-07-06T21:48:38   copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/trna
2019-07-06T21:48:38   copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2019-07-06T21:48:38   copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2019-07-06T21:48:38   copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2019-07-06T21:48:38   copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/protfeat
2019-07-06T21:48:38   copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat
2019-07-06T21:48:38   copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/extprog
2019-07-06T21:48:38   copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog
2019-07-06T21:48:38   copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:38   creating build/bdist.linux-armv7l/wheel/mitos/blast
2019-07-06T21:48:38   copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast
2019-07-06T21:48:38   copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:39   copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:39   copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos
2019-07-06T21:48:39   running install_egg_info
2019-07-06T21:48:39   Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.0.1-py3.5.egg-info
2019-07-06T21:48:39   running install_scripts
2019-07-06T21:48:39   creating build/bdist.linux-armv7l/wheel/mitos-2.0.1.data
2019-07-06T21:48:39   creating build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   copying build/scripts-3.5/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/plotprot.R to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/gcpp.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/subseq.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/getfeatures.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/geneorder.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/analyse.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/getinfo.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/plotrna.R to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/runmitos.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/plotstst.R to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/refseqsplit.py to 755
2019-07-06T21:48:39   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.1.data/scripts/taxtree.py to 755
2019-07-06T21:48:39   creating build/bdist.linux-armv7l/wheel/mitos-2.0.1.dist-info/WHEEL
2019-07-06T21:48:39   Building wheel for mitos (setup.py): finished with status 'done'
2019-07-06T21:48:39   Stored in directory: /tmp/tmp7g9a7mdv
2019-07-06T21:48:39 Successfully built mitos
2019-07-06T21:48:39 Cleaning up...
2019-07-06T21:48:39   Removing source in /tmp/pip-wheel-ht6q_ehy/mitos
2019-07-06T21:48:40 Removed build tracker '/tmp/pip-req-tracker-_zkxz5qc'