2019-07-06T22:52:40 Created temporary directory: /tmp/pip-ephem-wheel-cache-wv3mqykw
2019-07-06T22:52:40 Created temporary directory: /tmp/pip-req-tracker-5_2m8u3u
2019-07-06T22:52:40 Created requirements tracker '/tmp/pip-req-tracker-5_2m8u3u'
2019-07-06T22:52:40 Created temporary directory: /tmp/pip-wheel-ra77w2te
2019-07-06T22:52:40 Collecting genomelake==0.1.3
2019-07-06T22:52:40   1 location(s) to search for versions of genomelake:
2019-07-06T22:52:40   * https://pypi.org/simple/genomelake/
2019-07-06T22:52:40   Getting page https://pypi.org/simple/genomelake/
2019-07-06T22:52:40   Analyzing links from page https://pypi.org/simple/genomelake/
2019-07-06T22:52:40     Found link https://files.pythonhosted.org/packages/61/ff/e44bf090afa15196ab8b561fa006df736d03a9112614f613f097f5232b20/genomelake-0.1.1.tar.gz#sha256=bd43c5feb0850cb645753235a7aa42672bbf019b2a71aef25ea69ebc59aac4c6 (from https://pypi.org/simple/genomelake/), version: 0.1.1
2019-07-06T22:52:40     Found link https://files.pythonhosted.org/packages/7f/a4/3d4211b0cf4ef57bb2103b37cfe8d0a4484f77d45bf5969fc02d2521fc4a/genomelake-0.1.2.tar.gz#sha256=26667a7e3b01cfb65952ab128569d2302102bea96f1a63f2f26415f51ace9be1 (from https://pypi.org/simple/genomelake/), version: 0.1.2
2019-07-06T22:52:40     Found link https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 (from https://pypi.org/simple/genomelake/), version: 0.1.3
2019-07-06T22:52:40     Found link https://files.pythonhosted.org/packages/07/f9/bfefaffe5478615f126704c385d0f38383d9dd912a65fb090eced83ba01e/genomelake-0.1.4.tar.gz#sha256=fcec11be1cce15f08de0df34916f946a9470ed911050f5ab7098a1279e892253 (from https://pypi.org/simple/genomelake/), version: 0.1.4
2019-07-06T22:52:40   Using version 0.1.3 (newest of versions: 0.1.3)
2019-07-06T22:52:40   Created temporary directory: /tmp/pip-unpack-ssujh_jf
2019-07-06T22:52:41   Downloading https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz (88kB)
2019-07-06T22:52:41   Downloading from URL https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 (from https://pypi.org/simple/genomelake/)
2019-07-06T22:52:41   Added genomelake==0.1.3 from https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 to build tracker '/tmp/pip-req-tracker-5_2m8u3u'
2019-07-06T22:52:41     Running setup.py (path:/tmp/pip-wheel-ra77w2te/genomelake/setup.py) egg_info for package genomelake
2019-07-06T22:52:41     Running command python setup.py egg_info
2019-07-06T22:52:42     running egg_info
2019-07-06T22:52:42     creating pip-egg-info/genomelake.egg-info
2019-07-06T22:52:42     writing pip-egg-info/genomelake.egg-info/PKG-INFO
2019-07-06T22:52:42     writing dependency_links to pip-egg-info/genomelake.egg-info/dependency_links.txt
2019-07-06T22:52:42     writing requirements to pip-egg-info/genomelake.egg-info/requires.txt
2019-07-06T22:52:42     writing top-level names to pip-egg-info/genomelake.egg-info/top_level.txt
2019-07-06T22:52:42     writing manifest file 'pip-egg-info/genomelake.egg-info/SOURCES.txt'
2019-07-06T22:52:43     reading manifest file 'pip-egg-info/genomelake.egg-info/SOURCES.txt'
2019-07-06T22:52:43     reading manifest template 'MANIFEST.in'
2019-07-06T22:52:43     warning: no previously-included files matching '__pycache__' found under directory '*'
2019-07-06T22:52:43     warning: no previously-included files matching '*.py[co]' found under directory '*'
2019-07-06T22:52:43     writing manifest file 'pip-egg-info/genomelake.egg-info/SOURCES.txt'
2019-07-06T22:52:43   Source in /tmp/pip-wheel-ra77w2te/genomelake has version 0.1.3, which satisfies requirement genomelake==0.1.3 from https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30
2019-07-06T22:52:43   Removed genomelake==0.1.3 from https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 from build tracker '/tmp/pip-req-tracker-5_2m8u3u'
2019-07-06T22:52:43 Building wheels for collected packages: genomelake
2019-07-06T22:52:43   Created temporary directory: /tmp/pip-wheel-p_2_q5vf
2019-07-06T22:52:43   Building wheel for genomelake (setup.py): started
2019-07-06T22:52:43   Destination directory: /tmp/pip-wheel-p_2_q5vf
2019-07-06T22:52:43   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ra77w2te/genomelake/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-p_2_q5vf
2019-07-06T22:52:44   running bdist_wheel
2019-07-06T22:52:44   running build
2019-07-06T22:52:44   running build_py
2019-07-06T22:52:45   creating build
2019-07-06T22:52:45   creating build/lib.linux-armv7l-3.7
2019-07-06T22:52:45   creating build/lib.linux-armv7l-3.7/genomelake
2019-07-06T22:52:45   copying genomelake/backend.py -> build/lib.linux-armv7l-3.7/genomelake
2019-07-06T22:52:45   copying genomelake/extractors.py -> build/lib.linux-armv7l-3.7/genomelake
2019-07-06T22:52:45   copying genomelake/__init__.py -> build/lib.linux-armv7l-3.7/genomelake
2019-07-06T22:52:45   running build_ext
2019-07-06T22:52:45   skipping 'genomelake/util.c' Cython extension (up-to-date)
2019-07-06T22:52:45   building 'genomelake.util' extension
2019-07-06T22:52:45   creating build/temp.linux-armv7l-3.7
2019-07-06T22:52:45   creating build/temp.linux-armv7l-3.7/genomelake
2019-07-06T22:52:45   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c genomelake/util.c -o build/temp.linux-armv7l-3.7/genomelake/util.o
2019-07-06T22:52:46   genomelake/util.c: In function ‘__pyx_pf_10genomelake_4util_2one_hot_encode_sequence’:
2019-07-06T22:52:46   genomelake/util.c:221:53: warning: left-hand operand of comma expression has no effect [-Wunused-value]
2019-07-06T22:52:46    #define __Pyx_void_to_None(void_result) (void_result, Py_INCREF(Py_None), Py_None)
2019-07-06T22:52:46                                                        ^
2019-07-06T22:52:46   genomelake/util.c:2180:15: note: in expansion of macro ‘__Pyx_void_to_None’
2019-07-06T22:52:46      __pyx_t_1 = __Pyx_void_to_None(NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
2019-07-06T22:52:46                  ^~~~~~~~~~~~~~~~~~
2019-07-06T22:52:46   genomelake/util.c: In function ‘__Pyx_ExceptionSave’:
2019-07-06T22:52:46   genomelake/util.c:14537:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        *type = tstate->exc_type;
2019-07-06T22:52:46                        ^~~~~~~~
2019-07-06T22:52:46                        curexc_type
2019-07-06T22:52:46   genomelake/util.c:14538:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        *value = tstate->exc_value;
2019-07-06T22:52:46                         ^~~~~~~~~
2019-07-06T22:52:46                         curexc_value
2019-07-06T22:52:46   genomelake/util.c:14539:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        *tb = tstate->exc_traceback;
2019-07-06T22:52:46                      ^~~~~~~~~~~~~
2019-07-06T22:52:46                      curexc_traceback
2019-07-06T22:52:46   genomelake/util.c: In function ‘__Pyx_ExceptionReset’:
2019-07-06T22:52:46   genomelake/util.c:14551:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        tmp_type = tstate->exc_type;
2019-07-06T22:52:46                           ^~~~~~~~
2019-07-06T22:52:46                           curexc_type
2019-07-06T22:52:46   genomelake/util.c:14552:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        tmp_value = tstate->exc_value;
2019-07-06T22:52:46                            ^~~~~~~~~
2019-07-06T22:52:46                            curexc_value
2019-07-06T22:52:46   genomelake/util.c:14553:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        tmp_tb = tstate->exc_traceback;
2019-07-06T22:52:46                         ^~~~~~~~~~~~~
2019-07-06T22:52:46                         curexc_traceback
2019-07-06T22:52:46   genomelake/util.c:14554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        tstate->exc_type = type;
2019-07-06T22:52:46                ^~~~~~~~
2019-07-06T22:52:46                curexc_type
2019-07-06T22:52:46   genomelake/util.c:14555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        tstate->exc_value = value;
2019-07-06T22:52:46                ^~~~~~~~~
2019-07-06T22:52:46                curexc_value
2019-07-06T22:52:46   genomelake/util.c:14556:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        tstate->exc_traceback = tb;
2019-07-06T22:52:46                ^~~~~~~~~~~~~
2019-07-06T22:52:46                curexc_traceback
2019-07-06T22:52:46   genomelake/util.c: In function ‘__Pyx_GetException’:
2019-07-06T22:52:46   genomelake/util.c:14599:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        tmp_type = tstate->exc_type;
2019-07-06T22:52:46                           ^~~~~~~~
2019-07-06T22:52:46                           curexc_type
2019-07-06T22:52:46   genomelake/util.c:14600:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        tmp_value = tstate->exc_value;
2019-07-06T22:52:46                            ^~~~~~~~~
2019-07-06T22:52:46                            curexc_value
2019-07-06T22:52:46   genomelake/util.c:14601:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        tmp_tb = tstate->exc_traceback;
2019-07-06T22:52:46                         ^~~~~~~~~~~~~
2019-07-06T22:52:46                         curexc_traceback
2019-07-06T22:52:46   genomelake/util.c:14602:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        tstate->exc_type = local_type;
2019-07-06T22:52:46                ^~~~~~~~
2019-07-06T22:52:46                curexc_type
2019-07-06T22:52:46   genomelake/util.c:14603:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        tstate->exc_value = local_value;
2019-07-06T22:52:46                ^~~~~~~~~
2019-07-06T22:52:46                curexc_value
2019-07-06T22:52:46   genomelake/util.c:14604:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        tstate->exc_traceback = local_tb;
2019-07-06T22:52:46                ^~~~~~~~~~~~~
2019-07-06T22:52:46                curexc_traceback
2019-07-06T22:52:46   genomelake/util.c: In function ‘__Pyx_ExceptionSwap’:
2019-07-06T22:52:46   genomelake/util.c:15777:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        tmp_type = tstate->exc_type;
2019-07-06T22:52:46                           ^~~~~~~~
2019-07-06T22:52:46                           curexc_type
2019-07-06T22:52:46   genomelake/util.c:15778:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        tmp_value = tstate->exc_value;
2019-07-06T22:52:46                            ^~~~~~~~~
2019-07-06T22:52:46                            curexc_value
2019-07-06T22:52:46   genomelake/util.c:15779:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        tmp_tb = tstate->exc_traceback;
2019-07-06T22:52:46                         ^~~~~~~~~~~~~
2019-07-06T22:52:46                         curexc_traceback
2019-07-06T22:52:46   genomelake/util.c:15780:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-06T22:52:46        tstate->exc_type = *type;
2019-07-06T22:52:46                ^~~~~~~~
2019-07-06T22:52:46                curexc_type
2019-07-06T22:52:46   genomelake/util.c:15781:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-06T22:52:46        tstate->exc_value = *value;
2019-07-06T22:52:46                ^~~~~~~~~
2019-07-06T22:52:46                curexc_value
2019-07-06T22:52:46   genomelake/util.c:15782:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-06T22:52:46        tstate->exc_traceback = *tb;
2019-07-06T22:52:46                ^~~~~~~~~~~~~
2019-07-06T22:52:46                curexc_traceback
2019-07-06T22:52:47   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-07-06T22:52:47   Building wheel for genomelake (setup.py): finished with status 'error'
2019-07-06T22:52:47   ERROR: Failed building wheel for genomelake
2019-07-06T22:52:47   Running setup.py clean for genomelake
2019-07-06T22:52:47   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ra77w2te/genomelake/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-06T22:52:48   running clean
2019-07-06T22:52:48   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-07-06T22:52:48   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-06T22:52:48   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-06T22:52:48   'build/scripts-3.7' does not exist -- can't clean it
2019-07-06T22:52:48   removing 'build'
2019-07-06T22:52:48 Failed to build genomelake
2019-07-06T22:52:48 Cleaning up...
2019-07-06T22:52:48   Removing source in /tmp/pip-wheel-ra77w2te/genomelake
2019-07-06T22:52:48 Removed build tracker '/tmp/pip-req-tracker-5_2m8u3u'
2019-07-06T22:52:48 ERROR: Failed to build one or more wheels
2019-07-06T22:52:48 Exception information:
2019-07-06T22:52:48 Traceback (most recent call last):
2019-07-06T22:52:48   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-06T22:52:48     status = self.run(options, args)
2019-07-06T22:52:48   File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-06T22:52:48     "Failed to build one or more wheels"
2019-07-06T22:52:48 pip._internal.exceptions.CommandError: Failed to build one or more wheels