2019-07-07T19:26:20 Created temporary directory: /tmp/pip-ephem-wheel-cache-_lza2hq4 2019-07-07T19:26:20 Created temporary directory: /tmp/pip-req-tracker-awpfddok 2019-07-07T19:26:20 Created requirements tracker '/tmp/pip-req-tracker-awpfddok' 2019-07-07T19:26:20 Created temporary directory: /tmp/pip-wheel-bl7sogx_ 2019-07-07T19:26:20 Collecting pitools==1.0.0 2019-07-07T19:26:20 1 location(s) to search for versions of pitools: 2019-07-07T19:26:20 * https://pypi.org/simple/pitools/ 2019-07-07T19:26:20 Getting page https://pypi.org/simple/pitools/ 2019-07-07T19:26:20 Analyzing links from page https://pypi.org/simple/pitools/ 2019-07-07T19:26:20 Found link https://files.pythonhosted.org/packages/80/97/d51aaec3e094a58d94c8c12b2aa0bebae78cc461081a7db7f20a82ed29fb/pitools-1.0.0.tar.gz#sha256=d6d3512783dee97cdc98eafcd39df52ce7a2487fffbc9d00b64b105361065f2c (from https://pypi.org/simple/pitools/), version: 1.0.0 2019-07-07T19:26:20 Found link https://files.pythonhosted.org/packages/0b/85/00fe213d21b0c721307f3a87828371123de915def0f6e8fa16f23f5a58e5/pitools-1.0.1.tar.gz#sha256=8a5e33b18f6f29efdc717f782e937dd83810007460c395ad2debbfd5d57dd4e5 (from https://pypi.org/simple/pitools/), version: 1.0.1 2019-07-07T19:26:20 Using version 1.0.0 (newest of versions: 1.0.0) 2019-07-07T19:26:20 Created temporary directory: /tmp/pip-unpack-y_3murxc 2019-07-07T19:26:20 Downloading https://files.pythonhosted.org/packages/80/97/d51aaec3e094a58d94c8c12b2aa0bebae78cc461081a7db7f20a82ed29fb/pitools-1.0.0.tar.gz 2019-07-07T19:26:20 Downloading from URL https://files.pythonhosted.org/packages/80/97/d51aaec3e094a58d94c8c12b2aa0bebae78cc461081a7db7f20a82ed29fb/pitools-1.0.0.tar.gz#sha256=d6d3512783dee97cdc98eafcd39df52ce7a2487fffbc9d00b64b105361065f2c (from https://pypi.org/simple/pitools/) 2019-07-07T19:26:20 Added pitools==1.0.0 from https://files.pythonhosted.org/packages/80/97/d51aaec3e094a58d94c8c12b2aa0bebae78cc461081a7db7f20a82ed29fb/pitools-1.0.0.tar.gz#sha256=d6d3512783dee97cdc98eafcd39df52ce7a2487fffbc9d00b64b105361065f2c to build tracker '/tmp/pip-req-tracker-awpfddok' 2019-07-07T19:26:20 Running setup.py (path:/tmp/pip-wheel-bl7sogx_/pitools/setup.py) egg_info for package pitools 2019-07-07T19:26:20 Running command python setup.py egg_info 2019-07-07T19:26:22 running egg_info 2019-07-07T19:26:22 creating pip-egg-info/pitools.egg-info 2019-07-07T19:26:22 writing entry points to pip-egg-info/pitools.egg-info/entry_points.txt 2019-07-07T19:26:22 writing top-level names to pip-egg-info/pitools.egg-info/top_level.txt 2019-07-07T19:26:22 writing pip-egg-info/pitools.egg-info/PKG-INFO 2019-07-07T19:26:22 writing requirements to pip-egg-info/pitools.egg-info/requires.txt 2019-07-07T19:26:22 writing dependency_links to pip-egg-info/pitools.egg-info/dependency_links.txt 2019-07-07T19:26:22 writing manifest file 'pip-egg-info/pitools.egg-info/SOURCES.txt' 2019-07-07T19:26:23 reading manifest file 'pip-egg-info/pitools.egg-info/SOURCES.txt' 2019-07-07T19:26:23 writing manifest file 'pip-egg-info/pitools.egg-info/SOURCES.txt' 2019-07-07T19:26:23 Source in /tmp/pip-wheel-bl7sogx_/pitools has version 1.0.0, which satisfies requirement pitools==1.0.0 from https://files.pythonhosted.org/packages/80/97/d51aaec3e094a58d94c8c12b2aa0bebae78cc461081a7db7f20a82ed29fb/pitools-1.0.0.tar.gz#sha256=d6d3512783dee97cdc98eafcd39df52ce7a2487fffbc9d00b64b105361065f2c 2019-07-07T19:26:23 Removed pitools==1.0.0 from https://files.pythonhosted.org/packages/80/97/d51aaec3e094a58d94c8c12b2aa0bebae78cc461081a7db7f20a82ed29fb/pitools-1.0.0.tar.gz#sha256=d6d3512783dee97cdc98eafcd39df52ce7a2487fffbc9d00b64b105361065f2c from build tracker '/tmp/pip-req-tracker-awpfddok' 2019-07-07T19:26:23 Building wheels for collected packages: pitools 2019-07-07T19:26:23 Created temporary directory: /tmp/pip-wheel-ftr21zm9 2019-07-07T19:26:23 Building wheel for pitools (setup.py): started 2019-07-07T19:26:23 Destination directory: /tmp/pip-wheel-ftr21zm9 2019-07-07T19:26:23 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-bl7sogx_/pitools/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ftr21zm9 2019-07-07T19:26:25 running bdist_wheel 2019-07-07T19:26:25 running build 2019-07-07T19:26:25 running build_py 2019-07-07T19:26:25 creating build 2019-07-07T19:26:25 creating build/lib 2019-07-07T19:26:25 creating build/lib/pitools 2019-07-07T19:26:25 copying pitools/__init__.py -> build/lib/pitools 2019-07-07T19:26:25 copying pitools/utils.py -> build/lib/pitools 2019-07-07T19:26:25 copying pitools/pi_process.py -> build/lib/pitools 2019-07-07T19:26:25 creating build/lib/pitools/launch 2019-07-07T19:26:25 copying pitools/launch/__init__.py -> build/lib/pitools/launch 2019-07-07T19:26:25 copying pitools/launch/runfunction.py -> build/lib/pitools/launch 2019-07-07T19:26:25 copying pitools/launch/do.py -> build/lib/pitools/launch 2019-07-07T19:26:25 creating build/lib/pitools/tools 2019-07-07T19:26:25 copying pitools/tools/minimac3.py -> build/lib/pitools/tools 2019-07-07T19:26:25 copying pitools/tools/__init__.py -> build/lib/pitools/tools 2019-07-07T19:26:25 copying pitools/tools/check.py -> build/lib/pitools/tools 2019-07-07T19:26:25 copying pitools/tools/eagle.py -> build/lib/pitools/tools 2019-07-07T19:26:25 creating build/lib/pitools/modules 2019-07-07T19:26:25 copying pitools/modules/__init__.py -> build/lib/pitools/modules 2019-07-07T19:26:25 copying pitools/modules/imputation.py -> build/lib/pitools/modules 2019-07-07T19:26:25 copying pitools/modules/phasing.py -> build/lib/pitools/modules 2019-07-07T19:26:25 creating build/lib/pitools/log 2019-07-07T19:26:25 copying pitools/log/__init__.py -> build/lib/pitools/log 2019-07-07T19:26:25 running egg_info 2019-07-07T19:26:25 writing entry points to pitools.egg-info/entry_points.txt 2019-07-07T19:26:25 writing top-level names to pitools.egg-info/top_level.txt 2019-07-07T19:26:25 writing pitools.egg-info/PKG-INFO 2019-07-07T19:26:25 writing requirements to pitools.egg-info/requires.txt 2019-07-07T19:26:25 writing dependency_links to pitools.egg-info/dependency_links.txt 2019-07-07T19:26:25 reading manifest file 'pitools.egg-info/SOURCES.txt' 2019-07-07T19:26:25 writing manifest file 'pitools.egg-info/SOURCES.txt' 2019-07-07T19:26:25 installing to build/bdist.linux-armv7l/wheel 2019-07-07T19:26:25 running install 2019-07-07T19:26:25 running install_lib 2019-07-07T19:26:25 creating build/bdist.linux-armv7l 2019-07-07T19:26:25 creating build/bdist.linux-armv7l/wheel 2019-07-07T19:26:25 creating build/bdist.linux-armv7l/wheel/pitools 2019-07-07T19:26:25 creating build/bdist.linux-armv7l/wheel/pitools/launch 2019-07-07T19:26:25 copying build/lib/pitools/launch/__init__.py -> build/bdist.linux-armv7l/wheel/pitools/launch 2019-07-07T19:26:25 copying build/lib/pitools/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/pitools/launch 2019-07-07T19:26:25 copying build/lib/pitools/launch/do.py -> build/bdist.linux-armv7l/wheel/pitools/launch 2019-07-07T19:26:25 copying build/lib/pitools/__init__.py -> build/bdist.linux-armv7l/wheel/pitools 2019-07-07T19:26:25 copying build/lib/pitools/utils.py -> build/bdist.linux-armv7l/wheel/pitools 2019-07-07T19:26:25 creating build/bdist.linux-armv7l/wheel/pitools/tools 2019-07-07T19:26:25 copying build/lib/pitools/tools/minimac3.py -> build/bdist.linux-armv7l/wheel/pitools/tools 2019-07-07T19:26:25 copying build/lib/pitools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/pitools/tools 2019-07-07T19:26:25 copying build/lib/pitools/tools/check.py -> build/bdist.linux-armv7l/wheel/pitools/tools 2019-07-07T19:26:25 copying build/lib/pitools/tools/eagle.py -> build/bdist.linux-armv7l/wheel/pitools/tools 2019-07-07T19:26:25 creating build/bdist.linux-armv7l/wheel/pitools/modules 2019-07-07T19:26:25 copying build/lib/pitools/modules/__init__.py -> build/bdist.linux-armv7l/wheel/pitools/modules 2019-07-07T19:26:25 copying build/lib/pitools/modules/imputation.py -> build/bdist.linux-armv7l/wheel/pitools/modules 2019-07-07T19:26:25 copying build/lib/pitools/modules/phasing.py -> build/bdist.linux-armv7l/wheel/pitools/modules 2019-07-07T19:26:26 creating build/bdist.linux-armv7l/wheel/pitools/log 2019-07-07T19:26:26 copying build/lib/pitools/log/__init__.py -> build/bdist.linux-armv7l/wheel/pitools/log 2019-07-07T19:26:26 copying build/lib/pitools/pi_process.py -> build/bdist.linux-armv7l/wheel/pitools 2019-07-07T19:26:26 running install_egg_info 2019-07-07T19:26:26 Copying pitools.egg-info to build/bdist.linux-armv7l/wheel/pitools-1.0.0-py3.5.egg-info 2019-07-07T19:26:26 running install_scripts 2019-07-07T19:26:26 creating build/bdist.linux-armv7l/wheel/pitools-1.0.0.dist-info/WHEEL 2019-07-07T19:26:26 Building wheel for pitools (setup.py): finished with status 'done' 2019-07-07T19:26:26 Stored in directory: /tmp/tmpj7n76hv9 2019-07-07T19:26:26 Successfully built pitools 2019-07-07T19:26:26 Cleaning up... 2019-07-07T19:26:26 Removing source in /tmp/pip-wheel-bl7sogx_/pitools 2019-07-07T19:26:26 Removed build tracker '/tmp/pip-req-tracker-awpfddok'