2019-07-08T23:49:36 Created temporary directory: /tmp/pip-ephem-wheel-cache-fsa0jx8y
2019-07-08T23:49:36 Created temporary directory: /tmp/pip-req-tracker-225b6drg
2019-07-08T23:49:36 Created requirements tracker '/tmp/pip-req-tracker-225b6drg'
2019-07-08T23:49:36 Created temporary directory: /tmp/pip-wheel-v9fb14ph
2019-07-08T23:49:36 Collecting ScaleHDALSPAC==0.324.2
2019-07-08T23:49:36   1 location(s) to search for versions of ScaleHDALSPAC:
2019-07-08T23:49:36   * https://pypi.org/simple/scalehdalspac/
2019-07-08T23:49:36   Getting page https://pypi.org/simple/scalehdalspac/
2019-07-08T23:49:36   Analyzing links from page https://pypi.org/simple/scalehdalspac/
2019-07-08T23:49:36     Found link https://files.pythonhosted.org/packages/9c/88/8ba02b45957a132b97f1a1d96be62ed7f9a58f28505119df6b5c98ba961a/ScaleHDALSPAC-0.318.tar.gz#sha256=abbbae5a8b7081338553d836c1cc672c599baf2b6a630eb59168bce5d4870aef (from https://pypi.org/simple/scalehdalspac/) (requires-python:>=2.7.13), version: 0.318
2019-07-08T23:49:36     Found link https://files.pythonhosted.org/packages/4f/73/ddc04dab465cec126b2d1d96da2e814826c0e5aebbab8bc97b80b8455c5b/ScaleHDALSPAC-0.324b0.tar.gz#sha256=23e221c641145ef2d3955ed9b69cb552ecac350ba6fc4d9ca46a226f62fef18c (from https://pypi.org/simple/scalehdalspac/) (requires-python:>=2.7.13), version: 0.324b0
2019-07-08T23:49:36     Found link https://files.pythonhosted.org/packages/3d/22/d3b57f1735764e6625b51c3399f7b131451b2527dc498af64a91222173ba/ScaleHDALSPAC-0.324.1.tar.gz#sha256=9954c3f1bbc36a0fb105aa8db54f302a5c47b19a7ae52b8efe1b2dfdaccc647f (from https://pypi.org/simple/scalehdalspac/) (requires-python:>=2.7.13), version: 0.324.1
2019-07-08T23:49:36     Found link https://files.pythonhosted.org/packages/18/53/b2334329aa73c7e4e7b8c9cddc0770c436840ce6ba544612fb9ae327d7a9/ScaleHDALSPAC-0.324.2.tar.gz#sha256=73425c89a3ef4ab341b16b55c232a7a51e3189d4072195bf1ce1207b6f656d88 (from https://pypi.org/simple/scalehdalspac/) (requires-python:>=2.7.13), version: 0.324.2
2019-07-08T23:49:36   Using version 0.324.2 (newest of versions: 0.324.2)
2019-07-08T23:49:36   Created temporary directory: /tmp/pip-unpack-0pakit6_
2019-07-08T23:49:36   Downloading https://files.pythonhosted.org/packages/18/53/b2334329aa73c7e4e7b8c9cddc0770c436840ce6ba544612fb9ae327d7a9/ScaleHDALSPAC-0.324.2.tar.gz (1.0MB)
2019-07-08T23:49:36   Downloading from URL https://files.pythonhosted.org/packages/18/53/b2334329aa73c7e4e7b8c9cddc0770c436840ce6ba544612fb9ae327d7a9/ScaleHDALSPAC-0.324.2.tar.gz#sha256=73425c89a3ef4ab341b16b55c232a7a51e3189d4072195bf1ce1207b6f656d88 (from https://pypi.org/simple/scalehdalspac/) (requires-python:>=2.7.13)
2019-07-08T23:49:37   Added ScaleHDALSPAC==0.324.2 from https://files.pythonhosted.org/packages/18/53/b2334329aa73c7e4e7b8c9cddc0770c436840ce6ba544612fb9ae327d7a9/ScaleHDALSPAC-0.324.2.tar.gz#sha256=73425c89a3ef4ab341b16b55c232a7a51e3189d4072195bf1ce1207b6f656d88 to build tracker '/tmp/pip-req-tracker-225b6drg'
2019-07-08T23:49:37     Running setup.py (path:/tmp/pip-wheel-v9fb14ph/ScaleHDALSPAC/setup.py) egg_info for package ScaleHDALSPAC
2019-07-08T23:49:37     Running command python setup.py egg_info
2019-07-08T23:49:39     running egg_info
2019-07-08T23:49:39     creating pip-egg-info/ScaleHDALSPAC.egg-info
2019-07-08T23:49:39     writing entry points to pip-egg-info/ScaleHDALSPAC.egg-info/entry_points.txt
2019-07-08T23:49:39     writing requirements to pip-egg-info/ScaleHDALSPAC.egg-info/requires.txt
2019-07-08T23:49:39     writing pip-egg-info/ScaleHDALSPAC.egg-info/PKG-INFO
2019-07-08T23:49:39     writing dependency_links to pip-egg-info/ScaleHDALSPAC.egg-info/dependency_links.txt
2019-07-08T23:49:39     writing top-level names to pip-egg-info/ScaleHDALSPAC.egg-info/top_level.txt
2019-07-08T23:49:39     writing manifest file 'pip-egg-info/ScaleHDALSPAC.egg-info/SOURCES.txt'
2019-07-08T23:49:39     reading manifest file 'pip-egg-info/ScaleHDALSPAC.egg-info/SOURCES.txt'
2019-07-08T23:49:39     reading manifest template 'MANIFEST.in'
2019-07-08T23:49:39     warning: no files found matching 'ScaleHDALSPAC/genHTML/templates/fastqc.html'
2019-07-08T23:49:39     writing manifest file 'pip-egg-info/ScaleHDALSPAC.egg-info/SOURCES.txt'
2019-07-08T23:49:39   Source in /tmp/pip-wheel-v9fb14ph/ScaleHDALSPAC has version 0.324.2, which satisfies requirement ScaleHDALSPAC==0.324.2 from https://files.pythonhosted.org/packages/18/53/b2334329aa73c7e4e7b8c9cddc0770c436840ce6ba544612fb9ae327d7a9/ScaleHDALSPAC-0.324.2.tar.gz#sha256=73425c89a3ef4ab341b16b55c232a7a51e3189d4072195bf1ce1207b6f656d88
2019-07-08T23:49:39   Removed ScaleHDALSPAC==0.324.2 from https://files.pythonhosted.org/packages/18/53/b2334329aa73c7e4e7b8c9cddc0770c436840ce6ba544612fb9ae327d7a9/ScaleHDALSPAC-0.324.2.tar.gz#sha256=73425c89a3ef4ab341b16b55c232a7a51e3189d4072195bf1ce1207b6f656d88 from build tracker '/tmp/pip-req-tracker-225b6drg'
2019-07-08T23:49:39 Building wheels for collected packages: ScaleHDALSPAC
2019-07-08T23:49:39   Created temporary directory: /tmp/pip-wheel-b3x3k7hn
2019-07-08T23:49:39   Building wheel for ScaleHDALSPAC (setup.py): started
2019-07-08T23:49:39   Destination directory: /tmp/pip-wheel-b3x3k7hn
2019-07-08T23:49:39   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-v9fb14ph/ScaleHDALSPAC/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-b3x3k7hn
2019-07-08T23:49:41   running bdist_wheel
2019-07-08T23:49:41   running build
2019-07-08T23:49:41   running build_py
2019-07-08T23:49:41   creating build
2019-07-08T23:49:41   creating build/lib
2019-07-08T23:49:41   creating build/lib/ScaleHDALSPAC
2019-07-08T23:49:41   copying ScaleHDALSPAC/sherpa.py -> build/lib/ScaleHDALSPAC
2019-07-08T23:49:41   copying ScaleHDALSPAC/__backend.py -> build/lib/ScaleHDALSPAC
2019-07-08T23:49:41   copying ScaleHDALSPAC/__main__.py -> build/lib/ScaleHDALSPAC
2019-07-08T23:49:41   copying ScaleHDALSPAC/__init__.py -> build/lib/ScaleHDALSPAC
2019-07-08T23:49:41   copying ScaleHDALSPAC/__allelecontainer.py -> build/lib/ScaleHDALSPAC
2019-07-08T23:49:41   creating build/lib/ScaleHDALSPAC/predict
2019-07-08T23:49:41   copying ScaleHDALSPAC/predict/__prediction.py -> build/lib/ScaleHDALSPAC/predict
2019-07-08T23:49:41   copying ScaleHDALSPAC/predict/__snpcalling.py -> build/lib/ScaleHDALSPAC/predict
2019-07-08T23:49:41   copying ScaleHDALSPAC/predict/__init__.py -> build/lib/ScaleHDALSPAC/predict
2019-07-08T23:49:41   creating build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:41   copying ScaleHDALSPAC/genHTML/__generateHTML.py -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:41   copying ScaleHDALSPAC/genHTML/__init__.py -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:41   creating build/lib/ScaleHDALSPAC/seq_qc
2019-07-08T23:49:41   copying ScaleHDALSPAC/seq_qc/__quality_control.py -> build/lib/ScaleHDALSPAC/seq_qc
2019-07-08T23:49:41   copying ScaleHDALSPAC/seq_qc/__init__.py -> build/lib/ScaleHDALSPAC/seq_qc
2019-07-08T23:49:41   creating build/lib/ScaleHDALSPAC/align
2019-07-08T23:49:41   copying ScaleHDALSPAC/align/__alignment.py -> build/lib/ScaleHDALSPAC/align
2019-07-08T23:49:41   copying ScaleHDALSPAC/align/__atypical.py -> build/lib/ScaleHDALSPAC/align
2019-07-08T23:49:41   copying ScaleHDALSPAC/align/__init__.py -> build/lib/ScaleHDALSPAC/align
2019-07-08T23:49:41   running egg_info
2019-07-08T23:49:42   writing ScaleHDALSPAC.egg-info/PKG-INFO
2019-07-08T23:49:42   writing entry points to ScaleHDALSPAC.egg-info/entry_points.txt
2019-07-08T23:49:42   writing requirements to ScaleHDALSPAC.egg-info/requires.txt
2019-07-08T23:49:42   writing top-level names to ScaleHDALSPAC.egg-info/top_level.txt
2019-07-08T23:49:42   writing dependency_links to ScaleHDALSPAC.egg-info/dependency_links.txt
2019-07-08T23:49:42   reading manifest file 'ScaleHDALSPAC.egg-info/SOURCES.txt'
2019-07-08T23:49:42   reading manifest template 'MANIFEST.in'
2019-07-08T23:49:42   warning: no files found matching 'ScaleHDALSPAC/genHTML/templates/fastqc.html'
2019-07-08T23:49:42   writing manifest file 'ScaleHDALSPAC.egg-info/SOURCES.txt'
2019-07-08T23:49:42   creating build/lib/ScaleHDALSPAC/config
2019-07-08T23:49:42   copying ScaleHDALSPAC/config/config.dtd -> build/lib/ScaleHDALSPAC/config
2019-07-08T23:49:42   creating build/lib/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying ScaleHDALSPAC/train/likelihood_matrix.csv -> build/lib/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying ScaleHDALSPAC/train/long_descr.rst -> build/lib/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying ScaleHDALSPAC/train/polyglutamine.csv -> build/lib/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying ScaleHDALSPAC/train/raw_matrix.csv -> build/lib/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/chartBoxPlot.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/chartBase.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/chartZoom.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/gridism.css -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/jquery.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/msa.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/scalehd.css -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/scalehd.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/tablefilter.js -> build/lib/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   creating build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/alleletable.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/base.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/list.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/seqALN.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/seqGTYPE.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/seqqc.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/sequencedata.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying ScaleHDALSPAC/genHTML/templates/trim.html -> build/lib/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   installing to build/bdist.linux-armv7l/wheel
2019-07-08T23:49:42   running install
2019-07-08T23:49:42   running install_lib
2019-07-08T23:49:42   creating build/bdist.linux-armv7l
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/sherpa.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/__backend.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/__main__.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/predict
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/predict/__prediction.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/predict
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/predict/__snpcalling.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/predict
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/predict/__init__.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/predict
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/chartZoom.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/scalehd.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/scalehd.css -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/chartBase.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/jquery.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/chartBoxPlot.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/gridism.css -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/tablefilter.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/msa.js -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/__generateHTML.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/alleletable.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/trim.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/base.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/seqGTYPE.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/list.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/sequencedata.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/seqqc.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/templates/seqALN.html -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML/templates
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/genHTML/__init__.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/genHTML
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/seq_qc
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/seq_qc/__quality_control.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/seq_qc
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/seq_qc/__init__.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/seq_qc
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/train/likelihood_matrix.csv -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/train/raw_matrix.csv -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/train/long_descr.rst -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/train
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/train/polyglutamine.csv -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/train
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/config
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/config/config.dtd -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/config
2019-07-08T23:49:42   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/align
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/align/__alignment.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/align
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/align/__atypical.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/align
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/align/__init__.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC/align
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/__init__.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC
2019-07-08T23:49:42   copying build/lib/ScaleHDALSPAC/__allelecontainer.py -> build/bdist.linux-armv7l/wheel/ScaleHDALSPAC
2019-07-08T23:49:42   running install_egg_info
2019-07-08T23:49:42   Copying ScaleHDALSPAC.egg-info to build/bdist.linux-armv7l/wheel/ScaleHDALSPAC-0.324.2-py3.5.egg-info
2019-07-08T23:49:42   running install_scripts
2019-07-08T23:49:43   creating build/bdist.linux-armv7l/wheel/ScaleHDALSPAC-0.324.2.dist-info/WHEEL
2019-07-08T23:49:44   Building wheel for ScaleHDALSPAC (setup.py): finished with status 'done'
2019-07-08T23:49:44   Stored in directory: /tmp/tmpbyhoj3kz
2019-07-08T23:49:44 Successfully built ScaleHDALSPAC
2019-07-08T23:49:44 Cleaning up...
2019-07-08T23:49:44   Removing source in /tmp/pip-wheel-v9fb14ph/ScaleHDALSPAC
2019-07-08T23:49:44 Removed build tracker '/tmp/pip-req-tracker-225b6drg'