2019-07-09T04:01:18 Created temporary directory: /tmp/pip-ephem-wheel-cache-4y9971yi 2019-07-09T04:01:18 Created temporary directory: /tmp/pip-req-tracker-czu78ywr 2019-07-09T04:01:18 Created requirements tracker '/tmp/pip-req-tracker-czu78ywr' 2019-07-09T04:01:18 Created temporary directory: /tmp/pip-wheel-oe0xh19w 2019-07-09T04:01:18 Collecting humann2==2.8.0 2019-07-09T04:01:18 1 location(s) to search for versions of humann2: 2019-07-09T04:01:18 * https://pypi.org/simple/humann2/ 2019-07-09T04:01:18 Getting page https://pypi.org/simple/humann2/ 2019-07-09T04:01:18 Analyzing links from page https://pypi.org/simple/humann2/ 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/c3/66/2a1172f2fcb8287f1fa2c76ace974022bd18cc0a9adb6c2940b3a737f1d0/humann2-0.6.1.tar.gz#sha256=2bf89066d5593876bf1cb425a9d11981efced1c4e16b646e30233c32b658443e (from https://pypi.org/simple/humann2/), version: 0.6.1 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/59/39/56713a5d7290dd3cbf29fee2569eab4942e6cea554d1dea0d2a9cd5ff7dc/humann2-0.6.2.tar.gz#sha256=0104a84c2e58eafd837e671e19cac6b3da994a4547e00aa504fcb84915c0129a (from https://pypi.org/simple/humann2/), version: 0.6.2 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/ea/7f/be257ab8b01ae5e781d1f5c8cd2623f73702c0493f5a1013c7ed1eb466a0/humann2-0.7.0.tar.gz#sha256=fab0438ac037a2843d2d7ffa74a8f113e3a299144c6cfdc4a100cc16eebed274 (from https://pypi.org/simple/humann2/), version: 0.7.0 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/4d/36/014a45940edad508575a24bd00ba351c2bf4f8affb47b7546578f00bbcad/humann2-0.7.1.tar.gz#sha256=e22ad847e44de8e8ddabf687df9ae566b56c9870943223cdc438c475272c9fe0 (from https://pypi.org/simple/humann2/), version: 0.7.1 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/9e/51/4bc4ecb0e8591588a933cd6db972012eb8d3c30e63666aec6abb7ab306e4/humann2-0.8.0.tar.gz#sha256=21527527951cbedd772c4ca0316d36819ecf7f85444f752fcc11c0eac1213f03 (from https://pypi.org/simple/humann2/), version: 0.8.0 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/06/a3/55f01a55b20191d0051604c1f85aaf4784b7e48e009142de990871e2635d/humann2-0.8.1.tar.gz#sha256=67ba661507ab57ce9a2d13d12e3a8d3a117017907799eab845382df43a6cc785 (from https://pypi.org/simple/humann2/), version: 0.8.1 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/b1/f6/a07e651459490d3d44aeeedcd3797169fbf5a7df83b9f8e87712aa7b9fad/humann2-0.8.2.tar.gz#sha256=6fc49f4b1b43690f12cf36343ce252fb988129843828b593a894a085bbb8ad83 (from https://pypi.org/simple/humann2/), version: 0.8.2 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/c4/bf/002cfecf7bb0529a3127b709a309fbc02ee9710448ee50353c85ecad2910/humann2-0.9.0.tar.gz#sha256=edb855e5b38d2177cda7aceb7cc47b6524dd1cffc06f6069a4bf021d905937ea (from https://pypi.org/simple/humann2/), version: 0.9.0 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/cf/2e/55f3d984b2078f8ad64fbe9b6d851b77d35a0b415db31e14001c7b766676/humann2-0.9.1.tar.gz#sha256=691f5d98a211b966d29026e3a46161731565d7043de98d168e17b1acff882b82 (from https://pypi.org/simple/humann2/), version: 0.9.1 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/b5/8f/cc7b7d11a9e4acb64535be55218afeee5129eb586c9a1a87e7236172154a/humann2-0.9.2.tar.gz#sha256=7007cce99ad0b06f8f9532c28618303ab7b104257579ec8d2f328c58ae43ed27 (from https://pypi.org/simple/humann2/), version: 0.9.2 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/d1/21/0c932fa8b445745f70b760ee4286eedc4f5947b5617d1fb4ca252bcc4284/humann2-0.9.3.tar.gz#sha256=c758549ebaff38f2c34b64be1ef621b6715a47f195dace8da237b507cad86425 (from https://pypi.org/simple/humann2/), version: 0.9.3 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/3a/ff/969b72bc0bc24df3046915842fdd27195e68914c886b3046a356a377f8e5/humann2-0.9.4.tar.gz#sha256=ba4f0c7a43f9733e1b244b136e6063fc4a8e23745734a1bbe3154551c3ab014d (from https://pypi.org/simple/humann2/), version: 0.9.4 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/d5/2b/62a05b5a2e6b69693960dcf85d7e6599ba04764889af99902e138d492194/humann2-0.9.5.tar.gz#sha256=f0b713e3ea2aa4f55049c9ae7715318c6454112903b976683a21f6c16c344c17 (from https://pypi.org/simple/humann2/), version: 0.9.5 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/ab/46/f96e93f2cdcde40f89720f8b852904ff704a6b1268f2d5ef9600c50e730a/humann2-0.9.6.tar.gz#sha256=d2399572c6a41cfb1f44cf6547169a36dc8550d7b0265d7f1f2f7a65294f86e9 (from https://pypi.org/simple/humann2/), version: 0.9.6 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/29/e6/8be2db9877116022f9bfa8c2081d60991d1d823d8c0d35355e2c9f0d7f9f/humann2-0.9.7.tar.gz#sha256=2612f984dedfaff6284842f07bbc09615865a94e965b16f729705a8287923a03 (from https://pypi.org/simple/humann2/), version: 0.9.7 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/0a/9a/2d1cd74c4e33521ca09bc6e948eda0577bead1c47deab502431f5053a204/humann2-0.9.8.tar.gz#sha256=d0f02069c6cd1f523beca16a5b0c5a8542c6a52d91cf71361886022de0bb52cb (from https://pypi.org/simple/humann2/), version: 0.9.8 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/71/70/9c45436b6dab38706826a822411d6386376205d9c9fa53972e2ff3b7dda8/humann2-0.9.9.tar.gz#sha256=1193f799b7a976f2212df0351b1cbbd050a186485bd55da1c0a684468242c936 (from https://pypi.org/simple/humann2/), version: 0.9.9 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/81/b3/0ecd056032a0512247f8580b5c613873c803199776d06d21faa1f347836a/humann2-0.9.10.tar.gz#sha256=a375e9e2668d0304de6139146f143b191e6c53712f5e07aa5aca6f32755ce4c7 (from https://pypi.org/simple/humann2/), version: 0.9.10 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/8a/05/f1ed9f2a2e55b68fb5904dd70f09ff887ed0e9564fff63f0c23b2358216a/humann2-0.10.0.tar.gz#sha256=a0b6fb92734a76039e842f877f3abd4ef54ee5a6cc6946167be721731db0816c (from https://pypi.org/simple/humann2/), version: 0.10.0 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/58/80/afe92b880dd0f73305332c8e9dfb37acd01b688840eb2dfeaa104da18fd5/humann2-0.11.0.tar.gz#sha256=d1922394136d062af2c758d7f30775c929db237b912c22a69aa8557cb7ff06a5 (from https://pypi.org/simple/humann2/), version: 0.11.0 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/43/07/ec41577c3c1f9b578875ade8ed549d14fc2944c13cb7504579d542b62a69/humann2-0.11.1.tar.gz#sha256=be439ce3b4149f4dff900d2005a5951f99c4edc798c123f264549eb6d2b9bee3 (from https://pypi.org/simple/humann2/), version: 0.11.1 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/f2/c6/01ef12082fa44f06c5329bacb49c6dbeb4a04c66a60b0f64e4a9f1fb824a/humann2-0.11.2.tar.gz#sha256=e38dd7e04705f15b00159b68f4b2e9645806f83d39127e33ca08c236d4a4f86b (from https://pypi.org/simple/humann2/), version: 0.11.2 2019-07-09T04:01:19 Found link https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz#sha256=577ffa6c10d4ea79e5fd12a6852822d5a5c528b10c3d8895ca652ac4b6eb7204 (from https://pypi.org/simple/humann2/), version: 2.8.0 2019-07-09T04:01:19 Using version 2.8.0 (newest of versions: 2.8.0) 2019-07-09T04:01:19 Created temporary directory: /tmp/pip-unpack-zkyp_zna 2019-07-09T04:01:19 Downloading https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz (59.1MB) 2019-07-09T04:01:19 Downloading from URL https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz#sha256=577ffa6c10d4ea79e5fd12a6852822d5a5c528b10c3d8895ca652ac4b6eb7204 (from https://pypi.org/simple/humann2/) 2019-07-09T04:01:43 Added humann2==2.8.0 from https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz#sha256=577ffa6c10d4ea79e5fd12a6852822d5a5c528b10c3d8895ca652ac4b6eb7204 to build tracker '/tmp/pip-req-tracker-czu78ywr' 2019-07-09T04:01:43 Running setup.py (path:/tmp/pip-wheel-oe0xh19w/humann2/setup.py) egg_info for package humann2 2019-07-09T04:01:43 Running command python setup.py egg_info 2019-07-09T04:01:45 running egg_info 2019-07-09T04:01:45 creating pip-egg-info/humann2.egg-info 2019-07-09T04:01:45 writing top-level names to pip-egg-info/humann2.egg-info/top_level.txt 2019-07-09T04:01:45 writing pip-egg-info/humann2.egg-info/PKG-INFO 2019-07-09T04:01:45 writing dependency_links to pip-egg-info/humann2.egg-info/dependency_links.txt 2019-07-09T04:01:45 writing entry points to pip-egg-info/humann2.egg-info/entry_points.txt 2019-07-09T04:01:45 writing manifest file 'pip-egg-info/humann2.egg-info/SOURCES.txt' 2019-07-09T04:01:45 reading manifest file 'pip-egg-info/humann2.egg-info/SOURCES.txt' 2019-07-09T04:01:45 reading manifest template 'MANIFEST.in' 2019-07-09T04:01:45 warning: no files found matching 'humann2/tools/README.txt' 2019-07-09T04:01:45 warning: no files found matching 'humann2/maintenance/README.md' 2019-07-09T04:01:45 warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' 2019-07-09T04:01:45 no previously-included directories found matching 'humann2/quantify/MinPath' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' 2019-07-09T04:01:45 warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' 2019-07-09T04:01:45 writing manifest file 'pip-egg-info/humann2.egg-info/SOURCES.txt' 2019-07-09T04:01:46 Source in /tmp/pip-wheel-oe0xh19w/humann2 has version 2.8.0, which satisfies requirement humann2==2.8.0 from https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz#sha256=577ffa6c10d4ea79e5fd12a6852822d5a5c528b10c3d8895ca652ac4b6eb7204 2019-07-09T04:01:46 Removed humann2==2.8.0 from https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz#sha256=577ffa6c10d4ea79e5fd12a6852822d5a5c528b10c3d8895ca652ac4b6eb7204 from build tracker '/tmp/pip-req-tracker-czu78ywr' 2019-07-09T04:01:46 Building wheels for collected packages: humann2 2019-07-09T04:01:46 Created temporary directory: /tmp/pip-wheel-lalrz97x 2019-07-09T04:01:46 Building wheel for humann2 (setup.py): started 2019-07-09T04:01:46 Destination directory: /tmp/pip-wheel-lalrz97x 2019-07-09T04:01:46 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-oe0xh19w/humann2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lalrz97x 2019-07-09T04:01:48 running bdist_wheel 2019-07-09T04:01:48 running build 2019-07-09T04:01:48 running build_py 2019-07-09T04:01:48 creating build 2019-07-09T04:01:48 creating build/lib 2019-07-09T04:01:48 creating build/lib/humann2 2019-07-09T04:01:48 copying humann2/humann2.py -> build/lib/humann2 2019-07-09T04:01:48 copying humann2/utilities.py -> build/lib/humann2 2019-07-09T04:01:48 copying humann2/__init__.py -> build/lib/humann2 2019-07-09T04:01:48 copying humann2/store.py -> build/lib/humann2 2019-07-09T04:01:48 copying humann2/check.py -> build/lib/humann2 2019-07-09T04:01:48 copying humann2/config.py -> build/lib/humann2 2019-07-09T04:01:48 creating build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/cfg.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_quantify_families.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/functional_tests_tools.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_nucleotide_search.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/functional_tests_biom_humann2.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_blastx_coverage.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/basic_tests_utilities.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_quantify_modules.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/humann2_test.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_translated_search.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/basic_tests_nucleotide_search.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/__init__.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_store.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/functional_tests_humann2.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/basic_tests_quantify_modules.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/utils.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/basic_tests_store.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/functional_tests_biom_tools.py -> build/lib/humann2/tests 2019-07-09T04:01:48 copying humann2/tests/advanced_tests_utilities.py -> build/lib/humann2/tests 2019-07-09T04:01:48 creating build/lib/humann2/search 2019-07-09T04:01:48 copying humann2/search/prescreen.py -> build/lib/humann2/search 2019-07-09T04:01:48 copying humann2/search/translated.py -> build/lib/humann2/search 2019-07-09T04:01:48 copying humann2/search/pick_frames.py -> build/lib/humann2/search 2019-07-09T04:01:48 copying humann2/search/nucleotide.py -> build/lib/humann2/search 2019-07-09T04:01:48 copying humann2/search/__init__.py -> build/lib/humann2/search 2019-07-09T04:01:48 copying humann2/search/blastx_coverage.py -> build/lib/humann2/search 2019-07-09T04:01:48 creating build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/infer_taxonomy.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/renorm_table.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/util.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_barplot.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/split_stratified_table.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/merge_abundance.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_expand_results_taxonomy.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/join_tables.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_humann1_kegg.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/reduce_table.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/build_custom_database.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/regroup_table.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_associate.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/genefamilies_genus_level.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/rename_table.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/__init__.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_config.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_benchmark.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/split_table.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/strain_profiler.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/rna_dna_norm.py -> build/lib/humann2/tools 2019-07-09T04:01:48 copying humann2/tools/humann2_databases.py -> build/lib/humann2/tools 2019-07-09T04:01:48 creating build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/quantify/MinPath12hmp.py -> build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/quantify/modules.py -> build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/quantify/xipe.py -> build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/quantify/families.py -> build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/quantify/__init__.py -> build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/quantify/chi2cdf.py -> build/lib/humann2/quantify 2019-07-09T04:01:48 copying humann2/humann2.cfg -> build/lib/humann2 2019-07-09T04:01:48 creating build/lib/humann2/data 2019-07-09T04:01:48 creating build/lib/humann2/data/pathways 2019-07-09T04:01:49 copying humann2/data/pathways/metacyc_pathways_structured_filtered -> build/lib/humann2/data/pathways 2019-07-09T04:01:49 copying humann2/data/pathways/metacyc_pathways_to_organisms -> build/lib/humann2/data/pathways 2019-07-09T04:01:49 copying humann2/data/pathways/metacyc_pathways_structured -> build/lib/humann2/data/pathways 2019-07-09T04:01:49 copying humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/lib/humann2/data/pathways 2019-07-09T04:01:50 copying humann2/data/pathways/unipathway_uniprots.uniref.bz2 -> build/lib/humann2/data/pathways 2019-07-09T04:01:50 copying humann2/data/pathways/unipathway_pathways -> build/lib/humann2/data/pathways 2019-07-09T04:01:50 copying humann2/data/pathways/metacyc_pathways -> build/lib/humann2/data/pathways 2019-07-09T04:01:50 creating build/lib/humann2/data/misc 2019-07-09T04:01:50 copying humann2/data/misc/map_pfam_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:50 copying humann2/data/misc/map_eggnog_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:50 copying humann2/data/misc/map_metacyc-pwy_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:50 copying humann2/data/misc/map_go_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:50 copying humann2/data/misc/map_uniref50_name.txt.bz2 -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/map_metacyc-rxn_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/map_kegg-pwy_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/map_kegg-mdl_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/map_transporter_uniref50.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/README.txt -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/map_level4ec_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/KeggOrgId2OrgNameTable.txt -> build/lib/humann2/data/misc 2019-07-09T04:01:53 copying humann2/data/misc/map_ko_name.txt.gz -> build/lib/humann2/data/misc 2019-07-09T04:01:53 creating build/lib/humann2/data/uniref_DEMO 2019-07-09T04:01:53 copying humann2/data/uniref_DEMO/uniref90_demo_prots.faa -> build/lib/humann2/data/uniref_DEMO 2019-07-09T04:01:53 copying humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd -> build/lib/humann2/data/uniref_DEMO 2019-07-09T04:01:53 creating build/lib/humann2/data/chocophlan_DEMO 2019-07-09T04:01:53 copying humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz -> build/lib/humann2/data/chocophlan_DEMO 2019-07-09T04:01:54 copying humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz -> build/lib/humann2/data/chocophlan_DEMO 2019-07-09T04:01:54 creating build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/genefamilies_biom_match.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file_without_header_with_tags.sam -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo_pathabundance_with_names.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/rapsearch2_output_without_header.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo_metaphlan_bugs_list.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/convert_file_pick_frames.fasta -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file.fastq -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/reactions.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/multi_sample_genefamilies.biom -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/test_pathways.dat -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/annotations.sam -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo_genefamilies_with_names.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/rapsearch2_output_with_header.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/2_aligned_3_unaligned.sam -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/id_mapping.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file.bam -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/convert_file_at_character.fastq -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/test_pathways_flat.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file_with_header.sam -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo.fasta -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/genefamilies.biom -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/convert_file.fastq -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/small_map_uniref50_name.txt.gz -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo_pathcoverage_with_names.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file_single_line_sequences.fasta -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file_no_space_identifier.fastq -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo_genefamilies.biom -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/file.fasta -> build/lib/humann2/tests/data 2019-07-09T04:01:54 copying humann2/tests/data/demo_genefamilies.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/usearch_output.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/test_pathways_results.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/usearch_with_uniref50_output.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/id_mapping_coverage_filter.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/multi_sample_genefamilies_sample1.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/file_space_identifier.fastq -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/gene_families_uniref50_with_names.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/gene_families.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/convert_file.fasta -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/demo.sam -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/annotations.m8 -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/multi_sample_genefamilies_sample2.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/demo.fastq -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/id_mapping_gene_table.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/convert_file_multiline.fasta -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/multi_sample_genefamilies.tsv -> build/lib/humann2/tests/data 2019-07-09T04:01:55 copying humann2/tests/data/file_without_header.sam -> build/lib/humann2/tests/data 2019-07-09T04:01:55 creating build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/lib/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:01:55 creating build/lib/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:01:55 creating build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:55 copying humann2/tests/data/tooltest-rename_table/rename_table-input.biom -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-input.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table 2019-07-09T04:01:56 creating build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:01:56 creating build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/lib/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:01:56 creating build/lib/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/lib/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/lib/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/lib/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:01:56 creating build/lib/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/lib/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/lib/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/lib/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:01:56 copying humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/lib/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:01:56 installing to build/bdist.linux-armv7l/wheel 2019-07-09T04:01:56 running install 2019-07-09T04:01:56 Downloading counter file to track humann2 downloads since the global PyPI download stats are currently turned off. 2019-07-09T04:01:56 Downloading http://bitbucket.org/biobakery/humann2/downloads/counter.txt 2019-07-09T04:01:57 Downloading file of size: 0.00 MB 2019-07-09T04:01:57 0.01 MB 4075.62 % 4.75 MB/sec 0 min -0 sec 2019-07-09T04:01:57 Installing minpath. 2019-07-09T04:01:57 Downloading http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz 2019-07-09T04:02:01 0.01 MB 2019-07-09T04:02:01 0.02 MB 2019-07-09T04:02:01 0.02 MB 2019-07-09T04:02:01 0.03 MB 2019-07-09T04:02:01 0.04 MB 2019-07-09T04:02:01 0.05 MB 2019-07-09T04:02:01 0.05 MB 2019-07-09T04:02:01 0.06 MB 2019-07-09T04:02:01 0.07 MB 2019-07-09T04:02:01 0.08 MB 2019-07-09T04:02:01 0.09 MB 2019-07-09T04:02:01 0.09 MB 2019-07-09T04:02:01 0.10 MB 2019-07-09T04:02:01 0.11 MB 2019-07-09T04:02:01 0.12 MB 2019-07-09T04:02:01 0.12 MB 2019-07-09T04:02:01 0.13 MB 2019-07-09T04:02:01 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build/bdist.linux-armv7l/wheel 2019-07-09T04:02:10 creating build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:10 creating build/bdist.linux-armv7l/wheel/humann2/data 2019-07-09T04:02:10 creating build/bdist.linux-armv7l/wheel/humann2/data/chocophlan_DEMO 2019-07-09T04:02:10 copying build/lib/humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz -> build/bdist.linux-armv7l/wheel/humann2/data/chocophlan_DEMO 2019-07-09T04:02:10 copying build/lib/humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz -> build/bdist.linux-armv7l/wheel/humann2/data/chocophlan_DEMO 2019-07-09T04:02:10 creating build/bdist.linux-armv7l/wheel/humann2/data/uniref_DEMO 2019-07-09T04:02:10 copying build/lib/humann2/data/uniref_DEMO/uniref90_demo_prots.faa -> build/bdist.linux-armv7l/wheel/humann2/data/uniref_DEMO 2019-07-09T04:02:10 copying build/lib/humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd -> build/bdist.linux-armv7l/wheel/humann2/data/uniref_DEMO 2019-07-09T04:02:10 creating build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:10 copying build/lib/humann2/data/pathways/metacyc_pathways_structured_filtered -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:10 copying build/lib/humann2/data/pathways/metacyc_pathways_to_organisms -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:10 copying build/lib/humann2/data/pathways/metacyc_pathways_structured -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:10 copying build/lib/humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:11 copying build/lib/humann2/data/pathways/unipathway_uniprots.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:11 copying build/lib/humann2/data/pathways/unipathway_pathways -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:12 copying build/lib/humann2/data/pathways/metacyc_pathways -> build/bdist.linux-armv7l/wheel/humann2/data/pathways 2019-07-09T04:02:12 creating build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:12 copying build/lib/humann2/data/misc/map_pfam_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:12 copying build/lib/humann2/data/misc/map_eggnog_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:12 copying build/lib/humann2/data/misc/map_metacyc-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:12 copying build/lib/humann2/data/misc/map_go_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:12 copying build/lib/humann2/data/misc/map_uniref50_name.txt.bz2 -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/map_metacyc-rxn_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/map_kegg-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/map_kegg-mdl_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/map_transporter_uniref50.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/README.txt -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/map_level4ec_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/KeggOrgId2OrgNameTable.txt -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 copying build/lib/humann2/data/misc/map_ko_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc 2019-07-09T04:02:15 creating build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:15 copying build/lib/humann2/tests/cfg.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:15 creating build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/genefamilies_biom_match.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/demo.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/file_without_header_with_tags.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/demo_pathabundance_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/rapsearch2_output_without_header.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/demo_metaphlan_bugs_list.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/convert_file_pick_frames.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/file.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/reactions.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/multi_sample_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/test_pathways.dat -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/annotations.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/demo_genefamilies_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/rapsearch2_output_with_header.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/2_aligned_3_unaligned.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/id_mapping.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/file.bam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/convert_file_at_character.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/test_pathways_flat.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/file_with_header.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:15 copying build/lib/humann2/tests/data/demo.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/convert_file.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/small_map_uniref50_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/demo_pathcoverage_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/file_single_line_sequences.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/file_no_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/demo_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/file.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/usearch_output.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table 2019-07-09T04:02:16 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/test_pathways_results.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/usearch_with_uniref50_output.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/id_mapping_coverage_filter.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/multi_sample_genefamilies_sample1.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/file_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/gene_families_uniref50_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/gene_families.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/convert_file.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/demo.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/annotations.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/multi_sample_genefamilies_sample2.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:16 copying build/lib/humann2/tests/data/demo.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:17 copying build/lib/humann2/tests/data/id_mapping_gene_table.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:17 copying build/lib/humann2/tests/data/convert_file_multiline.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:17 copying build/lib/humann2/tests/data/multi_sample_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:17 copying build/lib/humann2/tests/data/file_without_header.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_quantify_families.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/functional_tests_tools.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/functional_tests_biom_humann2.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/basic_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/humann2_test.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_translated_search.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/basic_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_store.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/functional_tests_humann2.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/basic_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/utils.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/basic_tests_store.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/functional_tests_biom_tools.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/tests/advanced_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann2/tests 2019-07-09T04:02:17 copying build/lib/humann2/humann2.cfg -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 creating build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/search/prescreen.py -> build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/search/translated.py -> build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/search/pick_frames.py -> build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/search/nucleotide.py -> build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/search/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/search/blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann2/search 2019-07-09T04:02:17 copying build/lib/humann2/humann2.py -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 copying build/lib/humann2/utilities.py -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 copying build/lib/humann2/__init__.py -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 copying build/lib/humann2/store.py -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 creating build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/infer_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/renorm_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/util.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_barplot.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/split_stratified_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/merge_abundance.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_expand_results_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/join_tables.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_humann1_kegg.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/reduce_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/build_custom_database.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/regroup_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_associate.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/genefamilies_genus_level.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/rename_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_config.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_benchmark.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/split_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/strain_profiler.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/rna_dna_norm.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 copying build/lib/humann2/tools/humann2_databases.py -> build/bdist.linux-armv7l/wheel/humann2/tools 2019-07-09T04:02:17 creating build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/quantify/MinPath12hmp.py -> build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/quantify/modules.py -> build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/quantify/xipe.py -> build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/quantify/families.py -> build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/quantify/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/quantify/chi2cdf.py -> build/bdist.linux-armv7l/wheel/humann2/quantify 2019-07-09T04:02:17 copying build/lib/humann2/check.py -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 copying build/lib/humann2/config.py -> build/bdist.linux-armv7l/wheel/humann2 2019-07-09T04:02:17 running install_egg_info 2019-07-09T04:02:17 running egg_info 2019-07-09T04:02:17 writing humann2.egg-info/PKG-INFO 2019-07-09T04:02:17 writing dependency_links to humann2.egg-info/dependency_links.txt 2019-07-09T04:02:17 writing entry points to humann2.egg-info/entry_points.txt 2019-07-09T04:02:17 writing top-level names to humann2.egg-info/top_level.txt 2019-07-09T04:02:17 reading manifest file 'humann2.egg-info/SOURCES.txt' 2019-07-09T04:02:18 reading manifest template 'MANIFEST.in' 2019-07-09T04:02:18 warning: no files found matching 'humann2/tools/README.txt' 2019-07-09T04:02:18 warning: no files found matching 'humann2/maintenance/README.md' 2019-07-09T04:02:18 warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' 2019-07-09T04:02:18 no previously-included directories found matching 'humann2/quantify/MinPath' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' 2019-07-09T04:02:18 warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' 2019-07-09T04:02:18 writing manifest file 'humann2.egg-info/SOURCES.txt' 2019-07-09T04:02:18 Copying humann2.egg-info to build/bdist.linux-armv7l/wheel/humann2-2.8.0-py3.5.egg-info 2019-07-09T04:02:18 running install_scripts 2019-07-09T04:02:19 Installing latest glpk. 2019-07-09T04:02:19 Downloading http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz 2019-07-09T04:02:19 Downloading file of size: 3.27 MB 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'amd/amd_1.c' || echo './'`amd/amd_1.c 2019-07-09T04:07:08 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_1.lo -MD -MP -MF .deps/libglpk_la-amd_1.Tpo -c amd/amd_1.c -fPIC -DPIC -o .libs/libglpk_la-amd_1.o 2019-07-09T04:07:08 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_1.lo -MD -MP -MF .deps/libglpk_la-amd_1.Tpo -c amd/amd_1.c -o libglpk_la-amd_1.o >/dev/null 2>&1 2019-07-09T04:07:09 mv -f .deps/libglpk_la-amd_1.Tpo .deps/libglpk_la-amd_1.Plo 2019-07-09T04:07:09 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_2.lo -MD -MP -MF .deps/libglpk_la-amd_2.Tpo -c -o libglpk_la-amd_2.lo `test -f 'amd/amd_2.c' || echo './'`amd/amd_2.c 2019-07-09T04:07:09 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_2.lo -MD -MP -MF .deps/libglpk_la-amd_2.Tpo -c amd/amd_2.c -fPIC -DPIC -o .libs/libglpk_la-amd_2.o 2019-07-09T04:07:11 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_2.lo -MD -MP -MF .deps/libglpk_la-amd_2.Tpo -c amd/amd_2.c -o libglpk_la-amd_2.o >/dev/null 2>&1 2019-07-09T04:07:13 mv -f .deps/libglpk_la-amd_2.Tpo .deps/libglpk_la-amd_2.Plo 2019-07-09T04:07:13 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_aat.lo -MD -MP -MF .deps/libglpk_la-amd_aat.Tpo -c -o libglpk_la-amd_aat.lo `test -f 'amd/amd_aat.c' || echo './'`amd/amd_aat.c 2019-07-09T04:07:13 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_aat.lo -MD -MP -MF .deps/libglpk_la-amd_aat.Tpo -c amd/amd_aat.c -fPIC -DPIC -o .libs/libglpk_la-amd_aat.o 2019-07-09T04:07:13 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_aat.lo -MD -MP -MF .deps/libglpk_la-amd_aat.Tpo -c amd/amd_aat.c -o libglpk_la-amd_aat.o >/dev/null 2>&1 2019-07-09T04:07:14 mv -f .deps/libglpk_la-amd_aat.Tpo .deps/libglpk_la-amd_aat.Plo 2019-07-09T04:07:14 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_control.lo -MD -MP -MF .deps/libglpk_la-amd_control.Tpo -c -o libglpk_la-amd_control.lo `test -f 'amd/amd_control.c' || echo './'`amd/amd_control.c 2019-07-09T04:07:14 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_control.lo -MD -MP -MF .deps/libglpk_la-amd_control.Tpo -c amd/amd_control.c -fPIC -DPIC -o .libs/libglpk_la-amd_control.o 2019-07-09T04:07:14 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_control.lo -MD -MP -MF .deps/libglpk_la-amd_control.Tpo -c amd/amd_control.c -o libglpk_la-amd_control.o >/dev/null 2>&1 2019-07-09T04:07:15 mv -f .deps/libglpk_la-amd_control.Tpo .deps/libglpk_la-amd_control.Plo 2019-07-09T04:07:15 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_defaults.lo -MD -MP -MF .deps/libglpk_la-amd_defaults.Tpo -c 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-I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_info.lo -MD -MP -MF .deps/libglpk_la-amd_info.Tpo -c -o libglpk_la-amd_info.lo `test -f 'amd/amd_info.c' || echo './'`amd/amd_info.c 2019-07-09T04:07:16 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_info.lo -MD -MP -MF .deps/libglpk_la-amd_info.Tpo -c amd/amd_info.c -fPIC -DPIC -o .libs/libglpk_la-amd_info.o 2019-07-09T04:07:17 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_info.lo -MD -MP -MF .deps/libglpk_la-amd_info.Tpo -c amd/amd_info.c -o libglpk_la-amd_info.o >/dev/null 2>&1 2019-07-09T04:07:17 mv -f .deps/libglpk_la-amd_info.Tpo .deps/libglpk_la-amd_info.Plo 2019-07-09T04:07:17 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_order.lo -MD -MP -MF .deps/libglpk_la-amd_order.Tpo -c -o libglpk_la-amd_order.lo `test -f 'amd/amd_order.c' || echo './'`amd/amd_order.c 2019-07-09T04:07:17 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_order.lo -MD -MP -MF .deps/libglpk_la-amd_order.Tpo -c amd/amd_order.c -fPIC -DPIC -o .libs/libglpk_la-amd_order.o 2019-07-09T04:07:18 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_order.lo -MD -MP -MF .deps/libglpk_la-amd_order.Tpo -c amd/amd_order.c -o libglpk_la-amd_order.o >/dev/null 2>&1 2019-07-09T04:07:18 mv -f .deps/libglpk_la-amd_order.Tpo .deps/libglpk_la-amd_order.Plo 2019-07-09T04:07:19 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c -o libglpk_la-amd_post_tree.lo `test -f 'amd/amd_post_tree.c' || echo './'`amd/amd_post_tree.c 2019-07-09T04:07:19 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c amd/amd_post_tree.c -fPIC -DPIC -o .libs/libglpk_la-amd_post_tree.o 2019-07-09T04:07:19 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c amd/amd_post_tree.c -o libglpk_la-amd_post_tree.o >/dev/null 2>&1 2019-07-09T04:07:19 mv -f .deps/libglpk_la-amd_post_tree.Tpo .deps/libglpk_la-amd_post_tree.Plo 2019-07-09T04:07:19 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c -o libglpk_la-amd_postorder.lo `test -f 'amd/amd_postorder.c' || echo './'`amd/amd_postorder.c 2019-07-09T04:07:20 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c amd/amd_postorder.c -fPIC -DPIC -o .libs/libglpk_la-amd_postorder.o 2019-07-09T04:07:20 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c amd/amd_postorder.c -o libglpk_la-amd_postorder.o >/dev/null 2>&1 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.deps/libglpk_la-amd_preprocess.Tpo -c amd/amd_preprocess.c -o libglpk_la-amd_preprocess.o >/dev/null 2>&1 2019-07-09T04:07:22 mv -f .deps/libglpk_la-amd_preprocess.Tpo .deps/libglpk_la-amd_preprocess.Plo 2019-07-09T04:07:22 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c -o libglpk_la-amd_valid.lo `test -f 'amd/amd_valid.c' || echo './'`amd/amd_valid.c 2019-07-09T04:07:22 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c amd/amd_valid.c -fPIC -DPIC -o .libs/libglpk_la-amd_valid.o 2019-07-09T04:07:22 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c amd/amd_valid.c -o libglpk_la-amd_valid.o >/dev/null 2>&1 2019-07-09T04:07:22 mv -f .deps/libglpk_la-amd_valid.Tpo .deps/libglpk_la-amd_valid.Plo 2019-07-09T04:07:22 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c -o libglpk_la-btf.lo `test -f 'bflib/btf.c' || echo './'`bflib/btf.c 2019-07-09T04:07:23 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c bflib/btf.c -fPIC -DPIC -o .libs/libglpk_la-btf.o 2019-07-09T04:07:24 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c bflib/btf.c -o libglpk_la-btf.o >/dev/null 2>&1 2019-07-09T04:07:26 mv -f .deps/libglpk_la-btf.Tpo .deps/libglpk_la-btf.Plo 2019-07-09T04:07:26 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btfint.lo -MD -MP -MF .deps/libglpk_la-btfint.Tpo -c -o libglpk_la-btfint.lo `test -f 'bflib/btfint.c' || echo './'`bflib/btfint.c 2019-07-09T04:07:26 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btfint.lo -MD -MP -MF .deps/libglpk_la-btfint.Tpo -c bflib/btfint.c -fPIC -DPIC -o .libs/libglpk_la-btfint.o 2019-07-09T04:07:27 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT 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.deps/libglpk_la-fhvint.Tpo -c bflib/fhvint.c -o libglpk_la-fhvint.o >/dev/null 2>&1 2019-07-09T04:07:32 mv -f .deps/libglpk_la-fhvint.Tpo .deps/libglpk_la-fhvint.Plo 2019-07-09T04:07:32 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c -o libglpk_la-ifu.lo `test -f 'bflib/ifu.c' || echo './'`bflib/ifu.c 2019-07-09T04:07:32 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c bflib/ifu.c -fPIC -DPIC -o .libs/libglpk_la-ifu.o 2019-07-09T04:07:33 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c 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.deps/libglpk_la-scfint.Tpo .deps/libglpk_la-scfint.Plo 2019-07-09T04:07:42 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sgf.lo -MD -MP -MF .deps/libglpk_la-sgf.Tpo -c -o libglpk_la-sgf.lo `test -f 'bflib/sgf.c' || echo './'`bflib/sgf.c 2019-07-09T04:07:42 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sgf.lo -MD -MP -MF .deps/libglpk_la-sgf.Tpo -c bflib/sgf.c -fPIC -DPIC -o .libs/libglpk_la-sgf.o 2019-07-09T04:07:46 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sgf.lo -MD -MP -MF .deps/libglpk_la-sgf.Tpo -c bflib/sgf.c -o libglpk_la-sgf.o >/dev/null 2>&1 2019-07-09T04:07:49 mv -f .deps/libglpk_la-sgf.Tpo .deps/libglpk_la-sgf.Plo 2019-07-09T04:07:49 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sva.lo -MD -MP -MF .deps/libglpk_la-sva.Tpo -c -o libglpk_la-sva.lo `test -f 'bflib/sva.c' || echo './'`bflib/sva.c 2019-07-09T04:07:49 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sva.lo -MD -MP -MF .deps/libglpk_la-sva.Tpo -c bflib/sva.c -fPIC -DPIC -o .libs/libglpk_la-sva.o 2019-07-09T04:07:50 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sva.lo -MD -MP -MF .deps/libglpk_la-sva.Tpo -c bflib/sva.c -o libglpk_la-sva.o >/dev/null 2>&1 2019-07-09T04:07:51 mv -f .deps/libglpk_la-sva.Tpo .deps/libglpk_la-sva.Plo 2019-07-09T04:07:51 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.deps/libglpk_la-gzwrite.Tpo -c zlib/gzwrite.c -fPIC -DPIC -o .libs/libglpk_la-gzwrite.o 2019-07-09T04:09:18 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzwrite.lo -MD -MP -MF .deps/libglpk_la-gzwrite.Tpo -c zlib/gzwrite.c -o libglpk_la-gzwrite.o >/dev/null 2>&1 2019-07-09T04:09:19 mv -f .deps/libglpk_la-gzwrite.Tpo .deps/libglpk_la-gzwrite.Plo 2019-07-09T04:09:19 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inffast.lo -MD -MP -MF .deps/libglpk_la-inffast.Tpo -c -o libglpk_la-inffast.lo `test -f 'zlib/inffast.c' || echo './'`zlib/inffast.c 2019-07-09T04:09:19 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inffast.lo -MD 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libglpk_la-inflate.lo -MD -MP -MF .deps/libglpk_la-inflate.Tpo -c zlib/inflate.c -fPIC -DPIC -o .libs/libglpk_la-inflate.o 2019-07-09T04:09:24 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inflate.lo -MD -MP -MF .deps/libglpk_la-inflate.Tpo -c zlib/inflate.c -o libglpk_la-inflate.o >/dev/null 2>&1 2019-07-09T04:09:27 mv -f .deps/libglpk_la-inflate.Tpo .deps/libglpk_la-inflate.Plo 2019-07-09T04:09:27 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inftrees.lo -MD -MP -MF .deps/libglpk_la-inftrees.Tpo -c -o libglpk_la-inftrees.lo `test -f 'zlib/inftrees.c' || echo './'`zlib/inftrees.c 2019-07-09T04:09:27 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inftrees.lo -MD -MP -MF .deps/libglpk_la-inftrees.Tpo -c zlib/inftrees.c -fPIC -DPIC -o .libs/libglpk_la-inftrees.o 2019-07-09T04:09:27 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inftrees.lo -MD -MP -MF .deps/libglpk_la-inftrees.Tpo -c zlib/inftrees.c -o libglpk_la-inftrees.o >/dev/null 2>&1 2019-07-09T04:09:28 mv -f .deps/libglpk_la-inftrees.Tpo .deps/libglpk_la-inftrees.Plo 2019-07-09T04:09:28 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-trees.lo -MD -MP -MF .deps/libglpk_la-trees.Tpo -c -o libglpk_la-trees.lo `test -f 'zlib/trees.c' || echo './'`zlib/trees.c 2019-07-09T04:09:28 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-trees.lo -MD -MP -MF .deps/libglpk_la-trees.Tpo -c zlib/trees.c -fPIC -DPIC -o .libs/libglpk_la-trees.o 2019-07-09T04:09:30 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-trees.lo -MD -MP -MF .deps/libglpk_la-trees.Tpo -c zlib/trees.c -o libglpk_la-trees.o >/dev/null 2>&1 2019-07-09T04:09:32 mv -f .deps/libglpk_la-trees.Tpo .deps/libglpk_la-trees.Plo 2019-07-09T04:09:32 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c -o libglpk_la-uncompr.lo `test -f 'zlib/uncompr.c' || echo './'`zlib/uncompr.c 2019-07-09T04:09:32 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c zlib/uncompr.c -fPIC -DPIC -o .libs/libglpk_la-uncompr.o 2019-07-09T04:09:32 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c zlib/uncompr.c -o libglpk_la-uncompr.o >/dev/null 2>&1 2019-07-09T04:09:33 mv -f .deps/libglpk_la-uncompr.Tpo .deps/libglpk_la-uncompr.Plo 2019-07-09T04:09:33 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c -o libglpk_la-zio.lo `test -f 'zlib/zio.c' || echo './'`zlib/zio.c 2019-07-09T04:09:33 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c zlib/zio.c -fPIC -DPIC -o .libs/libglpk_la-zio.o 2019-07-09T04:09:33 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c zlib/zio.c -o libglpk_la-zio.o >/dev/null 2>&1 2019-07-09T04:09:33 mv -f .deps/libglpk_la-zio.Tpo .deps/libglpk_la-zio.Plo 2019-07-09T04:09:33 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c -o libglpk_la-zutil.lo `test -f 'zlib/zutil.c' || echo './'`zlib/zutil.c 2019-07-09T04:09:34 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -fPIC -DPIC -o .libs/libglpk_la-zutil.o 2019-07-09T04:09:34 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -o libglpk_la-zutil.o >/dev/null 2>&1 2019-07-09T04:09:34 mv -f .deps/libglpk_la-zutil.Tpo .deps/libglpk_la-zutil.Plo 2019-07-09T04:09:34 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -version-info 37:2:1 -export-symbols-regex '^glp_*' -o libglpk.la -rpath /usr/lib libglpk_la-avl.lo libglpk_la-bfd.lo libglpk_la-bfx.lo libglpk_la-glpapi01.lo libglpk_la-glpapi02.lo libglpk_la-glpapi03.lo libglpk_la-glpapi04.lo libglpk_la-glpapi05.lo libglpk_la-glpapi06.lo libglpk_la-glpapi07.lo libglpk_la-glpapi08.lo libglpk_la-glpapi09.lo libglpk_la-glpapi10.lo libglpk_la-glpapi11.lo libglpk_la-glpapi12.lo libglpk_la-glpapi13.lo libglpk_la-glpapi14.lo libglpk_la-glpapi15.lo libglpk_la-glpapi16.lo libglpk_la-glpapi17.lo libglpk_la-glpapi18.lo libglpk_la-glpapi19.lo libglpk_la-glpapi20.lo libglpk_la-glpapi21.lo libglpk_la-glpcpx.lo libglpk_la-glpdmx.lo libglpk_la-glpgmp.lo libglpk_la-glphbm.lo libglpk_la-glpini01.lo libglpk_la-glpini02.lo libglpk_la-glpios01.lo libglpk_la-glpios02.lo libglpk_la-glpios03.lo libglpk_la-glpios04.lo libglpk_la-glpios05.lo libglpk_la-glpios06.lo libglpk_la-glpios07.lo libglpk_la-glpios08.lo libglpk_la-glpios09.lo libglpk_la-glpios10.lo libglpk_la-glpios11.lo libglpk_la-glpios12.lo libglpk_la-glpipm.lo libglpk_la-glpmat.lo libglpk_la-glpmpl01.lo libglpk_la-glpmpl02.lo libglpk_la-glpmpl03.lo libglpk_la-glpmpl04.lo libglpk_la-glpmpl05.lo libglpk_la-glpmpl06.lo libglpk_la-glpmps.lo libglpk_la-glpnet03.lo libglpk_la-glpnet04.lo libglpk_la-glpnet05.lo libglpk_la-glpnpp01.lo libglpk_la-glpnpp02.lo libglpk_la-glpnpp03.lo libglpk_la-glpnpp04.lo libglpk_la-glpnpp05.lo libglpk_la-glpnpp06.lo libglpk_la-glprgr.lo libglpk_la-glpscl.lo libglpk_la-glpsdf.lo libglpk_la-glpspm.lo libglpk_la-glpspx01.lo libglpk_la-glpspx02.lo libglpk_la-glpsql.lo libglpk_la-glpssx01.lo libglpk_la-glpssx02.lo libglpk_la-glptsp.lo libglpk_la-lux.lo libglpk_la-amd_1.lo libglpk_la-amd_2.lo libglpk_la-amd_aat.lo libglpk_la-amd_control.lo libglpk_la-amd_defaults.lo libglpk_la-amd_dump.lo libglpk_la-amd_info.lo libglpk_la-amd_order.lo libglpk_la-amd_post_tree.lo libglpk_la-amd_postorder.lo libglpk_la-amd_preprocess.lo libglpk_la-amd_valid.lo libglpk_la-btf.lo libglpk_la-btfint.lo libglpk_la-fhv.lo libglpk_la-fhvint.lo libglpk_la-ifu.lo libglpk_la-luf.lo libglpk_la-lufint.lo libglpk_la-scf.lo libglpk_la-scfint.lo libglpk_la-sgf.lo libglpk_la-sva.lo libglpk_la-cfg.lo libglpk_la-cfg1.lo libglpk_la-colamd.lo libglpk_la-alloc.lo libglpk_la-dlsup.lo libglpk_la-env.lo libglpk_la-error.lo libglpk_la-stdout.lo libglpk_la-stream.lo libglpk_la-time.lo libglpk_la-tls.lo libglpk_la-minisat.lo libglpk_la-bignum.lo libglpk_la-dmp.lo libglpk_la-ffalg.lo libglpk_la-fp2rat.lo libglpk_la-gcd.lo libglpk_la-jd.lo libglpk_la-keller.lo libglpk_la-mc13d.lo libglpk_la-mc21a.lo libglpk_la-okalg.lo libglpk_la-qmd.lo libglpk_la-relax4.lo libglpk_la-rng.lo libglpk_la-rng1.lo libglpk_la-round2n.lo libglpk_la-str2int.lo libglpk_la-str2num.lo libglpk_la-strspx.lo libglpk_la-strtrim.lo libglpk_la-triang.lo libglpk_la-wclique.lo libglpk_la-wclique1.lo libglpk_la-proxy.lo libglpk_la-proxy1.lo libglpk_la-adler32.lo libglpk_la-compress.lo libglpk_la-crc32.lo libglpk_la-deflate.lo libglpk_la-gzclose.lo libglpk_la-gzlib.lo libglpk_la-gzread.lo libglpk_la-gzwrite.lo libglpk_la-inffast.lo libglpk_la-inflate.lo libglpk_la-inftrees.lo libglpk_la-trees.lo libglpk_la-uncompr.lo libglpk_la-zio.lo libglpk_la-zutil.lo -lm 2019-07-09T04:09:35 libtool: link: /usr/bin/nm -B .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o | sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' | /bin/sed 's/.* //' | sort | uniq > .libs/libglpk.exp 2019-07-09T04:09:36 libtool: link: /bin/grep -E -e "^glp_*" ".libs/libglpk.exp" > ".libs/libglpk.expT" 2019-07-09T04:09:36 libtool: link: mv -f ".libs/libglpk.expT" ".libs/libglpk.exp" 2019-07-09T04:09:36 libtool: link: echo "{ global:" > .libs/libglpk.ver 2019-07-09T04:09:36 libtool: link: cat .libs/libglpk.exp | sed -e "s/\(.*\)/\1;/" >> .libs/libglpk.ver 2019-07-09T04:09:36 libtool: link: echo "local: *; };" >> .libs/libglpk.ver 2019-07-09T04:09:36 libtool: link: gcc -shared -fPIC -DPIC .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o -lm -O2 -Wl,-soname -Wl,libglpk.so.36 -Wl,-version-script -Wl,.libs/libglpk.ver -o .libs/libglpk.so.36.1.2 2019-07-09T04:09:37 libtool: link: (cd ".libs" && rm -f "libglpk.so.36" && ln -s "libglpk.so.36.1.2" "libglpk.so.36") 2019-07-09T04:09:37 libtool: link: (cd ".libs" && rm -f "libglpk.so" && ln -s "libglpk.so.36.1.2" "libglpk.so") 2019-07-09T04:09:37 libtool: link: ar cru .libs/libglpk.a libglpk_la-avl.o libglpk_la-bfd.o libglpk_la-bfx.o libglpk_la-glpapi01.o libglpk_la-glpapi02.o libglpk_la-glpapi03.o libglpk_la-glpapi04.o libglpk_la-glpapi05.o libglpk_la-glpapi06.o libglpk_la-glpapi07.o libglpk_la-glpapi08.o libglpk_la-glpapi09.o libglpk_la-glpapi10.o libglpk_la-glpapi11.o libglpk_la-glpapi12.o libglpk_la-glpapi13.o libglpk_la-glpapi14.o libglpk_la-glpapi15.o libglpk_la-glpapi16.o libglpk_la-glpapi17.o libglpk_la-glpapi18.o libglpk_la-glpapi19.o libglpk_la-glpapi20.o libglpk_la-glpapi21.o libglpk_la-glpcpx.o libglpk_la-glpdmx.o libglpk_la-glpgmp.o libglpk_la-glphbm.o libglpk_la-glpini01.o libglpk_la-glpini02.o libglpk_la-glpios01.o libglpk_la-glpios02.o libglpk_la-glpios03.o libglpk_la-glpios04.o libglpk_la-glpios05.o libglpk_la-glpios06.o libglpk_la-glpios07.o libglpk_la-glpios08.o libglpk_la-glpios09.o libglpk_la-glpios10.o libglpk_la-glpios11.o libglpk_la-glpios12.o libglpk_la-glpipm.o libglpk_la-glpmat.o libglpk_la-glpmpl01.o libglpk_la-glpmpl02.o libglpk_la-glpmpl03.o libglpk_la-glpmpl04.o libglpk_la-glpmpl05.o libglpk_la-glpmpl06.o libglpk_la-glpmps.o libglpk_la-glpnet03.o libglpk_la-glpnet04.o libglpk_la-glpnet05.o libglpk_la-glpnpp01.o libglpk_la-glpnpp02.o libglpk_la-glpnpp03.o libglpk_la-glpnpp04.o libglpk_la-glpnpp05.o libglpk_la-glpnpp06.o libglpk_la-glprgr.o libglpk_la-glpscl.o libglpk_la-glpsdf.o libglpk_la-glpspm.o libglpk_la-glpspx01.o libglpk_la-glpspx02.o libglpk_la-glpsql.o libglpk_la-glpssx01.o libglpk_la-glpssx02.o libglpk_la-glptsp.o libglpk_la-lux.o libglpk_la-amd_1.o libglpk_la-amd_2.o libglpk_la-amd_aat.o libglpk_la-amd_control.o libglpk_la-amd_defaults.o libglpk_la-amd_dump.o libglpk_la-amd_info.o libglpk_la-amd_order.o libglpk_la-amd_post_tree.o libglpk_la-amd_postorder.o libglpk_la-amd_preprocess.o libglpk_la-amd_valid.o libglpk_la-btf.o libglpk_la-btfint.o libglpk_la-fhv.o libglpk_la-fhvint.o libglpk_la-ifu.o libglpk_la-luf.o libglpk_la-lufint.o libglpk_la-scf.o libglpk_la-scfint.o libglpk_la-sgf.o libglpk_la-sva.o libglpk_la-cfg.o libglpk_la-cfg1.o libglpk_la-colamd.o libglpk_la-alloc.o libglpk_la-dlsup.o libglpk_la-env.o libglpk_la-error.o libglpk_la-stdout.o libglpk_la-stream.o libglpk_la-time.o libglpk_la-tls.o libglpk_la-minisat.o libglpk_la-bignum.o libglpk_la-dmp.o libglpk_la-ffalg.o libglpk_la-fp2rat.o libglpk_la-gcd.o libglpk_la-jd.o libglpk_la-keller.o libglpk_la-mc13d.o libglpk_la-mc21a.o libglpk_la-okalg.o libglpk_la-qmd.o libglpk_la-relax4.o libglpk_la-rng.o libglpk_la-rng1.o libglpk_la-round2n.o libglpk_la-str2int.o libglpk_la-str2num.o libglpk_la-strspx.o libglpk_la-strtrim.o libglpk_la-triang.o libglpk_la-wclique.o libglpk_la-wclique1.o libglpk_la-proxy.o libglpk_la-proxy1.o libglpk_la-adler32.o libglpk_la-compress.o libglpk_la-crc32.o libglpk_la-deflate.o libglpk_la-gzclose.o libglpk_la-gzlib.o libglpk_la-gzread.o libglpk_la-gzwrite.o libglpk_la-inffast.o libglpk_la-inflate.o libglpk_la-inftrees.o libglpk_la-trees.o libglpk_la-uncompr.o libglpk_la-zio.o libglpk_la-zutil.o 2019-07-09T04:09:37 ar: `u' modifier ignored since `D' is the default (see `U') 2019-07-09T04:09:38 libtool: link: ranlib .libs/libglpk.a 2019-07-09T04:09:39 libtool: link: ( cd ".libs" && rm -f "libglpk.la" && ln -s "../libglpk.la" "libglpk.la" ) 2019-07-09T04:09:39 make[2]: Leaving directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/src' 2019-07-09T04:09:39 Making all in examples 2019-07-09T04:09:39 make[2]: Entering directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/examples' 2019-07-09T04:09:39 gcc -DHAVE_CONFIG_H -I. -I.. -I./../src -g -O2 -MT glpsol.o -MD -MP -MF .deps/glpsol.Tpo -c -o glpsol.o glpsol.c 2019-07-09T04:09:40 mv -f .deps/glpsol.Tpo .deps/glpsol.Po 2019-07-09T04:09:40 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -o glpsol glpsol.o ../src/libglpk.la -lm 2019-07-09T04:09:40 libtool: link: gcc -g -O2 -o .libs/glpsol glpsol.o ../src/.libs/libglpk.so -lm 2019-07-09T04:09:40 make[2]: Leaving directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/examples' 2019-07-09T04:09:40 make[2]: Entering directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55' 2019-07-09T04:09:40 make[2]: Leaving directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55' 2019-07-09T04:09:40 make[1]: Leaving directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55' 2019-07-09T04:09:40 Making install in src 2019-07-09T04:09:41 make[1]: Entering directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/src' 2019-07-09T04:09:42 make[2]: Entering directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/src' 2019-07-09T04:09:42 /bin/mkdir -p '/usr/lib' 2019-07-09T04:09:42 /bin/bash ../libtool --mode=install /usr/bin/install -c libglpk.la '/usr/lib' 2019-07-09T04:09:42 libtool: install: /usr/bin/install -c .libs/libglpk.so.36.1.2 /usr/lib/libglpk.so.36.1.2 2019-07-09T04:09:42 /usr/bin/install: cannot create regular file '/usr/lib/libglpk.so.36.1.2': Permission denied 2019-07-09T04:09:42 Makefile:502: recipe for target 'install-libLTLIBRARIES' failed 2019-07-09T04:09:42 make[2]: *** [install-libLTLIBRARIES] Error 1 2019-07-09T04:09:42 make[2]: Leaving directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/src' 2019-07-09T04:09:42 Makefile:1862: recipe for target 'install-am' failed 2019-07-09T04:09:42 make[1]: *** [install-am] Error 2 2019-07-09T04:09:42 make[1]: Leaving directory '/tmp/pip-wheel-oe0xh19w/humann2/glpk_download_qg9l2bzf/glpk-4.55/src' 2019-07-09T04:09:42 Makefile:320: recipe for target 'install-recursive' failed 2019-07-09T04:09:42 make: *** [install-recursive] Error 1 2019-07-09T04:09:43 Installing diamond. 2019-07-09T04:09:43 Downloading http://github.com/bbuchfink/diamond/releases/download/v0.8.22/diamond-linux64.tar.gz 2019-07-09T04:09:44 Downloading file of size: 1.75 MB 2019-07-09T04:09:45 0.01 MB 0.45 % 0.10 MB/sec 0 min 18 sec 2019-07-09T04:09:45 0.02 MB 0.89 % 0.19 MB/sec 0 min 9 sec 2019-07-09T04:09:45 0.02 MB 1.34 % 0.28 MB/sec 0 min 6 sec 2019-07-09T04:09:45 0.03 MB 1.79 % 0.37 MB/sec 0 min 5 sec 2019-07-09T04:09:45 0.04 MB 2.24 % 0.24 MB/sec 0 min 7 sec 2019-07-09T04:09:45 0.05 MB 2.68 % 0.28 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1.74 MB 99.69 % 2.54 MB/sec 0 min 0 sec 2019-07-09T04:09:45 1.75 MB 100.14 % 2.55 MB/sec 0 min -0 sec 2019-07-09T04:09:45 WARNING: Unable to install diamond. Please install diamond. 2019-07-09T04:09:45 Installing bowtie2. 2019-07-09T04:09:45 Downloading http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip 2019-07-09T04:09:48 Downloading file of size: 25.18 MB 2019-07-09T04:09:54 0.01 MB 0.03 % 0.23 MB/sec 1 min 50 sec 2019-07-09T04:09:54 0.02 MB 0.06 % 0.45 MB/sec 0 min 56 sec 2019-07-09T04:09:54 0.02 MB 0.09 % 0.64 MB/sec 0 min 39 sec 2019-07-09T04:09:54 0.03 MB 0.12 % 0.84 MB/sec 0 min 30 sec 2019-07-09T04:09:54 0.04 MB 0.16 % 0.54 MB/sec 0 min 46 sec 2019-07-09T04:09:54 0.05 MB 0.19 % 0.65 MB/sec 0 min 39 sec 2019-07-09T04:09:54 0.05 MB 0.22 % 0.73 MB/sec 0 min 34 sec 2019-07-09T04:09:54 0.06 MB 0.25 % 0.83 MB/sec 0 min 30 sec 2019-07-09T04:09:54 0.07 MB 0.28 % 0.91 MB/sec 0 min 28 sec 2019-07-09T04:09:54 0.08 MB 0.31 % 1.00 MB/sec 0 min 25 sec 2019-07-09T04:09:54 0.09 MB 0.34 % 1.08 MB/sec 0 min 23 sec 2019-07-09T04:09:54 0.09 MB 0.37 % 1.17 MB/sec 0 min 21 sec 2019-07-09T04:09:54 0.10 MB 0.40 % 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Please install bowtie2. 2019-07-09T04:10:04 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2019-07-09T04:10:04 creating build/bdist.linux-armv7l/wheel/humann2-2.8.0.dist-info/WHEEL 2019-07-09T04:10:04 creating '/tmp/pip-wheel-lalrz97x/humann2-2.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2019-07-09T04:10:04 adding 'humann2/__init__.py' 2019-07-09T04:10:04 adding 'humann2/check.py' 2019-07-09T04:10:04 adding 'humann2/config.py' 2019-07-09T04:10:04 adding 'humann2/humann2.cfg' 2019-07-09T04:10:04 adding 'humann2/humann2.py' 2019-07-09T04:10:04 adding 'humann2/store.py' 2019-07-09T04:10:04 adding 'humann2/utilities.py' 2019-07-09T04:10:05 adding 'humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz' 2019-07-09T04:10:05 adding 'humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/KeggOrgId2OrgNameTable.txt' 2019-07-09T04:10:05 adding 'humann2/data/misc/README.txt' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_eggnog_name.txt.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_go_name.txt.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_kegg-mdl_name.txt.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_kegg-pwy_name.txt.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_ko_name.txt.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_level4ec_name.txt.gz' 2019-07-09T04:10:05 adding 'humann2/data/misc/map_metacyc-pwy_name.txt.gz' 2019-07-09T04:10:06 adding 'humann2/data/misc/map_metacyc-rxn_name.txt.gz' 2019-07-09T04:10:06 adding 'humann2/data/misc/map_pfam_name.txt.gz' 2019-07-09T04:10:06 adding 'humann2/data/misc/map_transporter_uniref50.txt.gz' 2019-07-09T04:10:12 adding 'humann2/data/misc/map_uniref50_name.txt.bz2' 2019-07-09T04:10:12 adding 'humann2/data/pathways/metacyc_pathways' 2019-07-09T04:10:12 adding 'humann2/data/pathways/metacyc_pathways_structured' 2019-07-09T04:10:12 adding 'humann2/data/pathways/metacyc_pathways_structured_filtered' 2019-07-09T04:10:12 adding 'humann2/data/pathways/metacyc_pathways_to_organisms' 2019-07-09T04:10:14 adding 'humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2' 2019-07-09T04:10:15 adding 'humann2/data/pathways/unipathway_pathways' 2019-07-09T04:10:15 adding 'humann2/data/pathways/unipathway_uniprots.uniref.bz2' 2019-07-09T04:10:15 adding 'humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd' 2019-07-09T04:10:15 adding 'humann2/data/uniref_DEMO/uniref90_demo_prots.faa' 2019-07-09T04:10:15 adding 'humann2/quantify/MinPath12hmp.py' 2019-07-09T04:10:15 adding 'humann2/quantify/__init__.py' 2019-07-09T04:10:15 adding 'humann2/quantify/chi2cdf.py' 2019-07-09T04:10:15 adding 'humann2/quantify/families.py' 2019-07-09T04:10:15 adding 'humann2/quantify/modules.py' 2019-07-09T04:10:15 adding 'humann2/quantify/xipe.py' 2019-07-09T04:10:15 adding 'humann2/search/__init__.py' 2019-07-09T04:10:15 adding 'humann2/search/blastx_coverage.py' 2019-07-09T04:10:15 adding 'humann2/search/nucleotide.py' 2019-07-09T04:10:15 adding 'humann2/search/pick_frames.py' 2019-07-09T04:10:15 adding 'humann2/search/prescreen.py' 2019-07-09T04:10:15 adding 'humann2/search/translated.py' 2019-07-09T04:10:15 adding 'humann2/tests/__init__.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_blastx_coverage.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_nucleotide_search.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_quantify_families.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_quantify_modules.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_store.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_translated_search.py' 2019-07-09T04:10:15 adding 'humann2/tests/advanced_tests_utilities.py' 2019-07-09T04:10:15 adding 'humann2/tests/basic_tests_nucleotide_search.py' 2019-07-09T04:10:15 adding 'humann2/tests/basic_tests_quantify_modules.py' 2019-07-09T04:10:15 adding 'humann2/tests/basic_tests_store.py' 2019-07-09T04:10:16 adding 'humann2/tests/basic_tests_utilities.py' 2019-07-09T04:10:16 adding 'humann2/tests/cfg.py' 2019-07-09T04:10:16 adding 'humann2/tests/functional_tests_biom_humann2.py' 2019-07-09T04:10:16 adding 'humann2/tests/functional_tests_biom_tools.py' 2019-07-09T04:10:16 adding 'humann2/tests/functional_tests_humann2.py' 2019-07-09T04:10:16 adding 'humann2/tests/functional_tests_tools.py' 2019-07-09T04:10:16 adding 'humann2/tests/humann2_test.py' 2019-07-09T04:10:16 adding 'humann2/tests/utils.py' 2019-07-09T04:10:16 adding 'humann2/tests/data/2_aligned_3_unaligned.sam' 2019-07-09T04:10:16 adding 'humann2/tests/data/annotations.m8' 2019-07-09T04:10:16 adding 'humann2/tests/data/annotations.sam' 2019-07-09T04:10:16 adding 'humann2/tests/data/convert_file.fasta' 2019-07-09T04:10:16 adding 'humann2/tests/data/convert_file.fastq' 2019-07-09T04:10:16 adding 'humann2/tests/data/convert_file_at_character.fastq' 2019-07-09T04:10:16 adding 'humann2/tests/data/convert_file_multiline.fasta' 2019-07-09T04:10:16 adding 'humann2/tests/data/convert_file_pick_frames.fasta' 2019-07-09T04:10:17 adding 'humann2/tests/data/demo.fasta' 2019-07-09T04:10:19 adding 'humann2/tests/data/demo.fastq' 2019-07-09T04:10:19 adding 'humann2/tests/data/demo.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo.sam' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo_genefamilies.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo_genefamilies.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo_genefamilies_with_names.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo_metaphlan_bugs_list.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo_pathabundance_with_names.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/demo_pathcoverage_with_names.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/file.bam' 2019-07-09T04:10:20 adding 'humann2/tests/data/file.fasta' 2019-07-09T04:10:20 adding 'humann2/tests/data/file.fastq' 2019-07-09T04:10:20 adding 'humann2/tests/data/file_no_space_identifier.fastq' 2019-07-09T04:10:20 adding 'humann2/tests/data/file_single_line_sequences.fasta' 2019-07-09T04:10:20 adding 'humann2/tests/data/file_space_identifier.fastq' 2019-07-09T04:10:20 adding 'humann2/tests/data/file_with_header.sam' 2019-07-09T04:10:20 adding 'humann2/tests/data/file_without_header.sam' 2019-07-09T04:10:20 adding 'humann2/tests/data/file_without_header_with_tags.sam' 2019-07-09T04:10:20 adding 'humann2/tests/data/gene_families.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/gene_families_uniref50_with_names.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/genefamilies.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/genefamilies_biom_match.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/id_mapping.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/id_mapping_coverage_filter.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/id_mapping_gene_table.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/multi_sample_genefamilies.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/multi_sample_genefamilies.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/multi_sample_genefamilies_sample1.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/multi_sample_genefamilies_sample2.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/rapsearch2_output_with_header.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/rapsearch2_output_with_header_no_log.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/rapsearch2_output_without_header.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8' 2019-07-09T04:10:20 adding 'humann2/tests/data/reactions.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/small_map_uniref50_name.txt.gz' 2019-07-09T04:10:20 adding 'humann2/tests/data/test_pathways.dat' 2019-07-09T04:10:20 adding 'humann2/tests/data/test_pathways_flat.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/test_pathways_results.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/usearch_output.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/usearch_with_uniref50_output.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-infer_taxonomy/genes.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-input.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-input.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh' 2019-07-09T04:10:20 adding 'humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt' 2019-07-09T04:10:20 adding 'humann2/tools/__init__.py' 2019-07-09T04:10:20 adding 'humann2/tools/build_custom_database.py' 2019-07-09T04:10:20 adding 'humann2/tools/genefamilies_genus_level.py' 2019-07-09T04:10:20 adding 'humann2/tools/humann2_associate.py' 2019-07-09T04:10:20 adding 'humann2/tools/humann2_barplot.py' 2019-07-09T04:10:21 adding 'humann2/tools/humann2_benchmark.py' 2019-07-09T04:10:21 adding 'humann2/tools/humann2_config.py' 2019-07-09T04:10:21 adding 'humann2/tools/humann2_databases.py' 2019-07-09T04:10:21 adding 'humann2/tools/humann2_expand_results_taxonomy.py' 2019-07-09T04:10:21 adding 'humann2/tools/humann2_humann1_kegg.py' 2019-07-09T04:10:21 adding 'humann2/tools/infer_taxonomy.py' 2019-07-09T04:10:21 adding 'humann2/tools/join_tables.py' 2019-07-09T04:10:21 adding 'humann2/tools/merge_abundance.py' 2019-07-09T04:10:21 adding 'humann2/tools/reduce_table.py' 2019-07-09T04:10:21 adding 'humann2/tools/regroup_table.py' 2019-07-09T04:10:21 adding 'humann2/tools/rename_table.py' 2019-07-09T04:10:21 adding 'humann2/tools/renorm_table.py' 2019-07-09T04:10:21 adding 'humann2/tools/rna_dna_norm.py' 2019-07-09T04:10:21 adding 'humann2/tools/split_stratified_table.py' 2019-07-09T04:10:21 adding 'humann2/tools/split_table.py' 2019-07-09T04:10:21 adding 'humann2/tools/strain_profiler.py' 2019-07-09T04:10:21 adding 'humann2/tools/util.py' 2019-07-09T04:10:21 adding 'humann2-2.8.0.dist-info/LICENSE' 2019-07-09T04:10:21 adding 'humann2-2.8.0.dist-info/METADATA' 2019-07-09T04:10:21 adding 'humann2-2.8.0.dist-info/WHEEL' 2019-07-09T04:10:21 adding 'humann2-2.8.0.dist-info/entry_points.txt' 2019-07-09T04:10:21 adding 'humann2-2.8.0.dist-info/top_level.txt' 2019-07-09T04:10:21 adding 'humann2-2.8.0.dist-info/RECORD' 2019-07-09T04:10:26 removing build/bdist.linux-armv7l/wheel 2019-07-09T04:10:26 Building wheel for humann2 (setup.py): finished with status 'done' 2019-07-09T04:10:26 Stored in directory: /tmp/tmpkda2l2wp 2019-07-09T04:10:26 Successfully built humann2 2019-07-09T04:10:26 Cleaning up... 2019-07-09T04:10:26 Removing source in /tmp/pip-wheel-oe0xh19w/humann2 2019-07-09T04:10:27 Removed build tracker '/tmp/pip-req-tracker-czu78ywr'