Created temporary directory: /tmp/pip-ephem-wheel-cache-43uavu52
Created temporary directory: /tmp/pip-req-tracker-pht_pa33
Created requirements tracker '/tmp/pip-req-tracker-pht_pa33'
Created temporary directory: /tmp/pip-wheel-zpsyb2ak
Collecting gtdbtk==0.3.1
  1 location(s) to search for versions of gtdbtk:
  * https://pypi.org/simple/gtdbtk/
  Getting page https://pypi.org/simple/gtdbtk/
  Analyzing links from page https://pypi.org/simple/gtdbtk/
    Found link https://files.pythonhosted.org/packages/77/1d/a47e727062761ea6108b1be340d24c711131df11415d82cdb30bcb51738b/gtdbtk-0.0.1.tar.gz#sha256=3f9a367bf64dc907226c2ac5f39204080fa5f305a995dcfa183ec0da6f4187a8 (from https://pypi.org/simple/gtdbtk/), version: 0.0.1
    Found link https://files.pythonhosted.org/packages/78/fc/021b3e4fc9fc1a8d8596ccf703ee4f5abd97b496bc714a9bfc69332e913e/gtdbtk-0.0.2.tar.gz#sha256=b350aa8766a772509197a361646104b17dd106cf834fb9ea517c1924f5a8d345 (from https://pypi.org/simple/gtdbtk/), version: 0.0.2
    Found link https://files.pythonhosted.org/packages/b8/55/a62d05d6a2d35a6e9f2247586a77f8033eaeeffb8e8d4db6511252c8a59b/gtdbtk-0.0.3.tar.gz#sha256=55d6be274b732fa9bda5682892900ad0edc06a32f44db1fd5990910c206692b8 (from https://pypi.org/simple/gtdbtk/), version: 0.0.3
    Found link https://files.pythonhosted.org/packages/88/3d/2dedbfdce682d2c73aebb1182835889222aecefac4072e205e885b601be5/gtdbtk-0.0.4b0.tar.gz#sha256=39e82b23287c42e89b097b7aa163425a46b8616f2ec356d6b9fa5b1dccd85984 (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b0
    Found link https://files.pythonhosted.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz#sha256=eb4de226ccd8f266cc31fe11f2df8d8582cfd7164d7b3b4bf08cf97e0acf5004 (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b1
    Found link https://files.pythonhosted.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz#sha256=a92edcfd6f7e15b3aad5154d10f08798417d49df4634b7e9165c0e0fe55f35f0 (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b2
    Found link https://files.pythonhosted.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz#sha256=c98f0847a434e9f88cfaaa33b11b99f97123e6982a59d90a7291370f3cc2cc46 (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b3
    Found link https://files.pythonhosted.org/packages/bf/f1/ebd7ba5d9ac68fc00ec0f7a69b52111d945a70f836dd4ba975600b088a98/gtdbtk-0.0.5.tar.gz#sha256=116c8aff980e2af0d18cf79a5ce452cb78cee11c226425554c9b6f2b2969ec27 (from https://pypi.org/simple/gtdbtk/), version: 0.0.5
    Found link https://files.pythonhosted.org/packages/ca/7c/fc51570da6722bd31e310bb1ac218cb9d839dfae5d5e94d0ea3666402812/gtdbtk-0.0.6.tar.gz#sha256=e83a8ec329637753a4f7fc4672ae89442aa464a7daba55067cbf05ff195ae8c9 (from https://pypi.org/simple/gtdbtk/), version: 0.0.6
    Found link https://files.pythonhosted.org/packages/68/72/fdfc81336d6a94e8f286f562bc265e5d215f653f5d08d91689b6cb69a6cb/gtdbtk-0.0.7.tar.gz#sha256=6fa59cd7cb19aee52b82b179bb6efa7ba00a22b9c2317f9d01837e1e35d4a1e0 (from https://pypi.org/simple/gtdbtk/), version: 0.0.7
    Found link https://files.pythonhosted.org/packages/00/bb/2c2c4a00d4ca637be0daa7ac6bca99011afa8c42de7148c4e5dd6fc28141/gtdbtk-0.0.8b1.tar.gz#sha256=09183582b140dd0f40bda9db70e1f49347934c61cc2deab7214a183b915a0057 (from https://pypi.org/simple/gtdbtk/), version: 0.0.8b1
    Found link https://files.pythonhosted.org/packages/c0/3e/4a7f207340198fb69fe0764236f9cfb562840796cca457317024f1bcfb65/gtdbtk-0.1.0.tar.gz#sha256=4970c3a740f9d40142b81104ededd65cf109b57b11ab6ca66b6b21ed0ea40307 (from https://pypi.org/simple/gtdbtk/), version: 0.1.0
    Found link https://files.pythonhosted.org/packages/5f/c1/f028b36863e2b27d0a4191f4033eec25cfff898abceb97b0ccfa1352e1f0/gtdbtk-0.1.1.tar.gz#sha256=acfaed6f97b88b5a4cc327f956d408f6a0f8b49c0088f6222f992e179c1a8b89 (from https://pypi.org/simple/gtdbtk/), version: 0.1.1
    Found link https://files.pythonhosted.org/packages/1f/40/6a7cae5b58902ff5add1db17bf0dd24857bfedacd73f47096e3ef5789899/gtdbtk-0.1.2.tar.gz#sha256=2702d6b289e93ef725d01b6fe13d55abbe00711cb6704de8b2ad20604d8d2267 (from https://pypi.org/simple/gtdbtk/), version: 0.1.2
    Found link https://files.pythonhosted.org/packages/e4/e7/481464381afdf57da5e920a1713a73627373583c57d292ad7155e8b4f32c/gtdbtk-0.1.3.tar.gz#sha256=1063a8cdb0f72164fbba0f41e3df12ab23e944b0b15fc9e264bb0a2903b8978e (from https://pypi.org/simple/gtdbtk/), version: 0.1.3
    Found link https://files.pythonhosted.org/packages/29/6d/e9dc39898e8cc79fe54b5109ca7ed03842bcab51368cc6dbf05c2b2c6f39/gtdbtk-0.1.6.tar.gz#sha256=d30abfb59a1d9180bdbdb6d07d26b0baaa6fdf70f5ef08576bf284854cf3b262 (from https://pypi.org/simple/gtdbtk/), version: 0.1.6
    Found link https://files.pythonhosted.org/packages/db/c8/b052434152065efc0d209401041a7f7ba51c153832f4fe0a424fe0990cfa/gtdbtk-0.2.1.tar.gz#sha256=043118d31a94902eed5d623cc94ed3eb941c397411084d3909e3b504e0d1c4ca (from https://pypi.org/simple/gtdbtk/), version: 0.2.1
    Found link https://files.pythonhosted.org/packages/0a/74/8cbe8afea3aa0f7d6b948210b8937f3edcf541b3212cae2ce6aa560276a9/gtdbtk-0.2.2.tar.gz#sha256=23f6dd77e0102cfbc88d0e1c1cc4ba61a1df64ec71848a160ac4d9b5d2e81d1d (from https://pypi.org/simple/gtdbtk/), version: 0.2.2
    Found link https://files.pythonhosted.org/packages/45/de/019db6634299b4086a49646891c9e99347e2908713baa14641e15687e4af/gtdbtk-0.3.0.tar.gz#sha256=1048113616b37e30201b6b85cb80bdd952644c6c42240f4f876f6249cff9c41c (from https://pypi.org/simple/gtdbtk/), version: 0.3.0
    Found link https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz#sha256=ac6329774211953e431b449788ac0bfbf16a6485eb33b4d4559e84a7cc080bda (from https://pypi.org/simple/gtdbtk/), version: 0.3.1
  Using version 0.3.1 (newest of versions: 0.3.1)
  Created temporary directory: /tmp/pip-unpack-dzqyddyt
  Downloading https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz (1.6MB)
  Downloading from URL https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz#sha256=ac6329774211953e431b449788ac0bfbf16a6485eb33b4d4559e84a7cc080bda (from https://pypi.org/simple/gtdbtk/)
  Added gtdbtk==0.3.1 from https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz#sha256=ac6329774211953e431b449788ac0bfbf16a6485eb33b4d4559e84a7cc080bda to build tracker '/tmp/pip-req-tracker-pht_pa33'
  Running setup.py (path:/tmp/pip-wheel-zpsyb2ak/gtdbtk/setup.py) egg_info for package gtdbtk
    Running command python setup.py egg_info
    running egg_info
    creating pip-egg-info/gtdbtk.egg-info
    writing top-level names to pip-egg-info/gtdbtk.egg-info/top_level.txt
    writing pip-egg-info/gtdbtk.egg-info/PKG-INFO
    writing requirements to pip-egg-info/gtdbtk.egg-info/requires.txt
    writing dependency_links to pip-egg-info/gtdbtk.egg-info/dependency_links.txt
    writing manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt'
    package init file 'gtdbtk/tests/__init__.py' not found (or not a regular file)
    reading manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no files found matching 'genome_1.fna'
    warning: no files found matching 'genome_2.fna'
    warning: no files found matching 'genome_3.fna'
    warning: no previously-included files matching 'genome_*_protein.fna' found anywhere in distribution
    writing manifest file 'pip-egg-info/gtdbtk.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-zpsyb2ak/gtdbtk has version 0.3.1, which satisfies requirement gtdbtk==0.3.1 from https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz#sha256=ac6329774211953e431b449788ac0bfbf16a6485eb33b4d4559e84a7cc080bda
  Removed gtdbtk==0.3.1 from https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz#sha256=ac6329774211953e431b449788ac0bfbf16a6485eb33b4d4559e84a7cc080bda from build tracker '/tmp/pip-req-tracker-pht_pa33'
Building wheels for collected packages: gtdbtk
  Created temporary directory: /tmp/pip-wheel-kj9ga18b
  Running setup.py bdist_wheel for gtdbtk: started
  Destination directory: /tmp/pip-wheel-kj9ga18b
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-zpsyb2ak/gtdbtk/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-kj9ga18b
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/gtdbtk
  copying gtdbtk/exceptions.py -> build/lib/gtdbtk
  copying gtdbtk/misc.py -> build/lib/gtdbtk
  copying gtdbtk/relative_distance.py -> build/lib/gtdbtk
  copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk
  copying gtdbtk/markers.py -> build/lib/gtdbtk
  copying gtdbtk/main.py -> build/lib/gtdbtk
  copying gtdbtk/trim_msa.py -> build/lib/gtdbtk
  copying gtdbtk/classify.py -> build/lib/gtdbtk
  copying gtdbtk/tools.py -> build/lib/gtdbtk
  copying gtdbtk/__init__.py -> build/lib/gtdbtk
  creating build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite
  copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite
  creating build/lib/gtdbtk/config
  copying gtdbtk/config/config.py -> build/lib/gtdbtk/config
  copying gtdbtk/config/output.py -> build/lib/gtdbtk/config
  copying gtdbtk/config/config_template.py -> build/lib/gtdbtk/config
  copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config
  creating build/lib/gtdbtk/external
  copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external
  copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external
  copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external
  copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external
  copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external
  copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external
  package init file 'gtdbtk/tests/__init__.py' not found (or not a regular file)
  creating build/lib/gtdbtk/external/pypfam
  copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam
  creating build/lib/gtdbtk/external/pypfam/HMM
  copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM
  copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM
  copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM
  copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM
  copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM
  copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM
  creating build/lib/gtdbtk/external/pypfam/Scan
  copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan
  copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan
  copying gtdbtk/VERSION -> build/lib/gtdbtk
  creating build/lib/gtdbtk/tests
  creating build/lib/gtdbtk/tests/data
  creating build/lib/gtdbtk/tests/data/genomes
  copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes
  copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes
  copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes
  running build_scripts
  creating build/scripts-3.5
  copying and adjusting bin/gtdbtk -> build/scripts-3.5
  changing mode of build/scripts-3.5/gtdbtk from 644 to 755
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  creating build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite
  copying build/lib/gtdbtk/misc.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  creating build/bdist.linux-armv7l/wheel/gtdbtk/tests
  creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data
  creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
  copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
  copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
  copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes
  copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  creating build/bdist.linux-armv7l/wheel/gtdbtk/config
  copying build/lib/gtdbtk/config/config.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
  copying build/lib/gtdbtk/config/output.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
  copying build/lib/gtdbtk/config/config_template.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
  copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config
  copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  creating build/bdist.linux-armv7l/wheel/gtdbtk/external
  copying build/lib/gtdbtk/external/pplacer.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
  copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
  copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
  copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
  creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
  creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
  copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
  copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan
  creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM
  copying build/lib/gtdbtk/external/pypfam/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam
  copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
  copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external
  copying build/lib/gtdbtk/VERSION -> build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/trim_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk
  running install_egg_info
  running egg_info
  writing dependency_links to gtdbtk.egg-info/dependency_links.txt
  writing requirements to gtdbtk.egg-info/requires.txt
  writing gtdbtk.egg-info/PKG-INFO
  writing top-level names to gtdbtk.egg-info/top_level.txt
  reading manifest file 'gtdbtk.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'genome_1.fna'
  warning: no files found matching 'genome_2.fna'
  warning: no files found matching 'genome_3.fna'
  warning: no previously-included files matching 'genome_*_protein.fna' found anywhere in distribution
  writing manifest file 'gtdbtk.egg-info/SOURCES.txt'
  Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-0.3.1-py3.5.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/gtdbtk-0.3.1.data
  creating build/bdist.linux-armv7l/wheel/gtdbtk-0.3.1.data/scripts
  copying build/scripts-3.5/gtdbtk -> build/bdist.linux-armv7l/wheel/gtdbtk-0.3.1.data/scripts
  changing mode of build/bdist.linux-armv7l/wheel/gtdbtk-0.3.1.data/scripts/gtdbtk to 755
  creating build/bdist.linux-armv7l/wheel/gtdbtk-0.3.1.dist-info/WHEEL
  creating '/tmp/pip-wheel-kj9ga18b/gtdbtk-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
  adding 'gtdbtk/VERSION'
  adding 'gtdbtk/__init__.py'
  adding 'gtdbtk/classify.py'
  adding 'gtdbtk/exceptions.py'
  adding 'gtdbtk/main.py'
  adding 'gtdbtk/markers.py'
  adding 'gtdbtk/misc.py'
  adding 'gtdbtk/relative_distance.py'
  adding 'gtdbtk/reroot_tree.py'
  adding 'gtdbtk/tools.py'
  adding 'gtdbtk/trim_msa.py'
  adding 'gtdbtk/biolib_lite/__init__.py'
  adding 'gtdbtk/biolib_lite/common.py'
  adding 'gtdbtk/biolib_lite/custom_help_formatter.py'
  adding 'gtdbtk/biolib_lite/exceptions.py'
  adding 'gtdbtk/biolib_lite/execute.py'
  adding 'gtdbtk/biolib_lite/logger.py'
  adding 'gtdbtk/biolib_lite/newick.py'
  adding 'gtdbtk/biolib_lite/parallel.py'
  adding 'gtdbtk/biolib_lite/prodigal_biolib.py'
  adding 'gtdbtk/biolib_lite/seq_io.py'
  adding 'gtdbtk/biolib_lite/taxonomy.py'
  adding 'gtdbtk/config/__init__.py'
  adding 'gtdbtk/config/config.py'
  adding 'gtdbtk/config/config_template.py'
  adding 'gtdbtk/config/output.py'
  adding 'gtdbtk/external/__init__.py'
  adding 'gtdbtk/external/hmm_aligner.py'
  adding 'gtdbtk/external/pfam_search.py'
  adding 'gtdbtk/external/pplacer.py'
  adding 'gtdbtk/external/prodigal.py'
  adding 'gtdbtk/external/tigrfam_search.py'
  adding 'gtdbtk/external/pypfam/__init__.py'
  adding 'gtdbtk/external/pypfam/HMM/HMMMatch.py'
  adding 'gtdbtk/external/pypfam/HMM/HMMResults.py'
  adding 'gtdbtk/external/pypfam/HMM/HMMResultsIO.py'
  adding 'gtdbtk/external/pypfam/HMM/HMMSequence.py'
  adding 'gtdbtk/external/pypfam/HMM/HMMUnit.py'
  adding 'gtdbtk/external/pypfam/HMM/__init__.py'
  adding 'gtdbtk/external/pypfam/Scan/PfamScan.py'
  adding 'gtdbtk/external/pypfam/Scan/__init__.py'
  adding 'gtdbtk/tests/data/genomes/genome_1.fna'
  adding 'gtdbtk/tests/data/genomes/genome_2.fna'
  adding 'gtdbtk/tests/data/genomes/genome_3.fna'
  adding 'gtdbtk-0.3.1.data/scripts/gtdbtk'
  adding 'gtdbtk-0.3.1.dist-info/METADATA'
  adding 'gtdbtk-0.3.1.dist-info/WHEEL'
  adding 'gtdbtk-0.3.1.dist-info/top_level.txt'
  adding 'gtdbtk-0.3.1.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for gtdbtk: finished with status 'done'
  Stored in directory: /tmp/tmpvdykfqll
Successfully built gtdbtk
Cleaning up...
  Removing source in /tmp/pip-wheel-zpsyb2ak/gtdbtk
Removed build tracker '/tmp/pip-req-tracker-pht_pa33'