2019-07-10T15:26:08 Created temporary directory: /tmp/pip-ephem-wheel-cache-32hae3a7
2019-07-10T15:26:08 Created temporary directory: /tmp/pip-req-tracker-y0odkj8q
2019-07-10T15:26:08 Created requirements tracker '/tmp/pip-req-tracker-y0odkj8q'
2019-07-10T15:26:08 Created temporary directory: /tmp/pip-wheel-s2ri0qab
2019-07-10T15:26:08 Collecting ssw_aligner==0.0.6
2019-07-10T15:26:08   1 location(s) to search for versions of ssw-aligner:
2019-07-10T15:26:08   * https://pypi.org/simple/ssw-aligner/
2019-07-10T15:26:08   Getting page https://pypi.org/simple/ssw-aligner/
2019-07-10T15:26:08   Analyzing links from page https://pypi.org/simple/ssw-aligner/
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/26/c5/d6d45f897bcaabc6413b3eba32aceb83da292e4837d172fd478e679326ae/ssw_aligner-0.0.0.tar.gz#sha256=351e349a3bdae762af3ae7b75ccc2b370249637b6f07bfc37b4dc49108c52622 (from https://pypi.org/simple/ssw-aligner/), version: 0.0.0
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/db/90/df5f1864262c4dfdca23700b93fd6f12e7525d050c2e3a059f756ce3cb5c/ssw_aligner-0.0.1.tar.gz#sha256=e73c3131d28286036e24febfea053f1c7da307089aae45f67fafc52edd3efbcb (from https://pypi.org/simple/ssw-aligner/), version: 0.0.1
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/00/40/c2aee762db470efb345706da1fdafcba22fa9458f702f5867cbc2a2202f4/ssw_aligner-0.0.2.tar.gz#sha256=7eb5f68217f3b4e0cbae45efb1e0f51c49d4545f9023243e54b66392ff1e8b55 (from https://pypi.org/simple/ssw-aligner/), version: 0.0.2
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/07/28/37a2fbf4b0bc91cc3d441524aec94dc8bb7a4f62fea679a6c25dbd3235c5/ssw_aligner-0.0.3.tar.gz#sha256=a2cb3c681fca5b51967474163c0ca51e9d22834785f06040570c9c9444c8cd40 (from https://pypi.org/simple/ssw-aligner/), version: 0.0.3
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/5c/c9/1b596cea0939fcde6549b0be70518b7bad3d23335006c5641438b3605813/ssw_aligner-0.0.4.tar.gz#sha256=093d4998d0b5bc43bf5549a764d25bff8b2d371963b8496b63049ff9fd360613 (from https://pypi.org/simple/ssw-aligner/), version: 0.0.4
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/96/3b/1fda982e7c2264d8164fd3cacd82a1a00de575a1eff68b3f86c578af2a7b/ssw_aligner-0.0.5.tar.gz#sha256=07074bd56e69ecd83aeb1aade3a63bf78c0f16a14afaca44fa27952f049bbd68 (from https://pypi.org/simple/ssw-aligner/), version: 0.0.5
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz#sha256=6e155f4d5f97cbf86711b20431a4213bbf02e635b74bd8a1b1b4c5c4ae14dbbc (from https://pypi.org/simple/ssw-aligner/), version: 0.0.6
2019-07-10T15:26:08     Found link https://files.pythonhosted.org/packages/09/33/a6ec7a29e0c5112a4626e82de22f1d3041a9848deeedb0eb10b29f955fd0/ssw_aligner-0.0.7.tar.gz#sha256=ea2cd0f4a03dd2d49c7cc0d7f10ffaedfeb2f3bbc84e156f4c5e1d8c4a7cb538 (from https://pypi.org/simple/ssw-aligner/), version: 0.0.7
2019-07-10T15:26:08   Using version 0.0.6 (newest of versions: 0.0.6)
2019-07-10T15:26:08   Created temporary directory: /tmp/pip-unpack-7gu63k20
2019-07-10T15:26:08   Downloading https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz (104kB)
2019-07-10T15:26:08   Downloading from URL https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz#sha256=6e155f4d5f97cbf86711b20431a4213bbf02e635b74bd8a1b1b4c5c4ae14dbbc (from https://pypi.org/simple/ssw-aligner/)
2019-07-10T15:26:09   Added ssw_aligner==0.0.6 from https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz#sha256=6e155f4d5f97cbf86711b20431a4213bbf02e635b74bd8a1b1b4c5c4ae14dbbc to build tracker '/tmp/pip-req-tracker-y0odkj8q'
2019-07-10T15:26:09     Running setup.py (path:/tmp/pip-wheel-s2ri0qab/ssw-aligner/setup.py) egg_info for package ssw-aligner
2019-07-10T15:26:09     Running command python setup.py egg_info
2019-07-10T15:26:16     Compiling ssw_aligner/ssw_wrapper.pyx because it depends on /usr/lib/python3/dist-packages/Cython/Includes/numpy/__init__.pxd.
2019-07-10T15:26:16     [1/1] Cythonizing ssw_aligner/ssw_wrapper.pyx
2019-07-10T15:26:16     running egg_info
2019-07-10T15:26:16     creating pip-egg-info/ssw_aligner.egg-info
2019-07-10T15:26:16     writing pip-egg-info/ssw_aligner.egg-info/PKG-INFO
2019-07-10T15:26:16     writing dependency_links to pip-egg-info/ssw_aligner.egg-info/dependency_links.txt
2019-07-10T15:26:16     writing top-level names to pip-egg-info/ssw_aligner.egg-info/top_level.txt
2019-07-10T15:26:16     writing manifest file 'pip-egg-info/ssw_aligner.egg-info/SOURCES.txt'
2019-07-10T15:26:16     reading manifest file 'pip-egg-info/ssw_aligner.egg-info/SOURCES.txt'
2019-07-10T15:26:16     reading manifest template 'MANIFEST.in'
2019-07-10T15:26:16     /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-s2ri0qab/ssw-aligner/ssw_aligner/ssw_wrapper.pyx
2019-07-10T15:26:16       tree = Parsing.p_module(s, pxd, full_module_name)
2019-07-10T15:26:16     warning: no files found matching 'RELEASE.md'
2019-07-10T15:26:16     writing manifest file 'pip-egg-info/ssw_aligner.egg-info/SOURCES.txt'
2019-07-10T15:26:17   Source in /tmp/pip-wheel-s2ri0qab/ssw-aligner has version 0.0.6, which satisfies requirement ssw_aligner==0.0.6 from https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz#sha256=6e155f4d5f97cbf86711b20431a4213bbf02e635b74bd8a1b1b4c5c4ae14dbbc
2019-07-10T15:26:17   Removed ssw_aligner==0.0.6 from https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz#sha256=6e155f4d5f97cbf86711b20431a4213bbf02e635b74bd8a1b1b4c5c4ae14dbbc from build tracker '/tmp/pip-req-tracker-y0odkj8q'
2019-07-10T15:26:17 Building wheels for collected packages: ssw-aligner
2019-07-10T15:26:17   Created temporary directory: /tmp/pip-wheel-ve46r7qw
2019-07-10T15:26:17   Building wheel for ssw-aligner (setup.py): started
2019-07-10T15:26:17   Destination directory: /tmp/pip-wheel-ve46r7qw
2019-07-10T15:26:17   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-s2ri0qab/ssw-aligner/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ve46r7qw
2019-07-10T15:26:20   running bdist_wheel
2019-07-10T15:26:20   running build
2019-07-10T15:26:20   running build_py
2019-07-10T15:26:20   creating build
2019-07-10T15:26:20   creating build/lib.linux-armv7l-3.7
2019-07-10T15:26:20   creating build/lib.linux-armv7l-3.7/ssw_aligner
2019-07-10T15:26:20   copying ssw_aligner/__init__.py -> build/lib.linux-armv7l-3.7/ssw_aligner
2019-07-10T15:26:20   creating build/lib.linux-armv7l-3.7/ssw_aligner/_lib
2019-07-10T15:26:20   copying ssw_aligner/_lib/__init__.py -> build/lib.linux-armv7l-3.7/ssw_aligner/_lib
2019-07-10T15:26:20   running build_ext
2019-07-10T15:26:20   building 'ssw_aligner.ssw_wrapper' extension
2019-07-10T15:26:20   creating build/temp.linux-armv7l-3.7
2019-07-10T15:26:20   creating build/temp.linux-armv7l-3.7/ssw_aligner
2019-07-10T15:26:20   creating build/temp.linux-armv7l-3.7/ssw_aligner/_lib
2019-07-10T15:26:20   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Issw_aligner -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c ssw_aligner/ssw_wrapper.c -o build/temp.linux-armv7l-3.7/ssw_aligner/ssw_wrapper.o -Wno-error=declaration-after-statement
2019-07-10T15:26:21   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-10T15:26:21                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-10T15:26:21                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-10T15:26:21                    from ssw_aligner/ssw_wrapper.c:636:
2019-07-10T15:26:21   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-10T15:26:21    #warning "Using deprecated NumPy API, disable it with " \
2019-07-10T15:26:21     ^~~~~~~
2019-07-10T15:26:21   In file included from ssw_aligner/ssw_wrapper.c:638:
2019-07-10T15:26:21   ssw_aligner/_lib/ssw.h:17:10: fatal error: emmintrin.h: No such file or directory
2019-07-10T15:26:21    #include <emmintrin.h>
2019-07-10T15:26:21             ^~~~~~~~~~~~~
2019-07-10T15:26:21   compilation terminated.
2019-07-10T15:26:21   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-07-10T15:26:21   Building wheel for ssw-aligner (setup.py): finished with status 'error'
2019-07-10T15:26:21   ERROR: Failed building wheel for ssw-aligner
2019-07-10T15:26:21   Running setup.py clean for ssw-aligner
2019-07-10T15:26:21   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-s2ri0qab/ssw-aligner/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-10T15:26:24   running clean
2019-07-10T15:26:24   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-07-10T15:26:24   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-10T15:26:24   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-10T15:26:24   'build/scripts-3.7' does not exist -- can't clean it
2019-07-10T15:26:24   removing 'build'
2019-07-10T15:26:24 Failed to build ssw-aligner
2019-07-10T15:26:24 Cleaning up...
2019-07-10T15:26:24   Removing source in /tmp/pip-wheel-s2ri0qab/ssw-aligner
2019-07-10T15:26:24 Removed build tracker '/tmp/pip-req-tracker-y0odkj8q'
2019-07-10T15:26:24 ERROR: Failed to build one or more wheels
2019-07-10T15:26:24 Exception information:
2019-07-10T15:26:24 Traceback (most recent call last):
2019-07-10T15:26:24   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-10T15:26:24     status = self.run(options, args)
2019-07-10T15:26:24   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-10T15:26:24     "Failed to build one or more wheels"
2019-07-10T15:26:24 pip._internal.exceptions.CommandError: Failed to build one or more wheels