Created temporary directory: /tmp/pip-ephem-wheel-cache-myme1mjk
Created temporary directory: /tmp/pip-req-tracker-chfgg4l6
Created requirements tracker '/tmp/pip-req-tracker-chfgg4l6'
Created temporary directory: /tmp/pip-wheel-zcf3pxu7
Collecting gemini==0.30.2
  1 location(s) to search for versions of gemini:
  * https://pypi.org/simple/gemini/
  Getting page https://pypi.org/simple/gemini/
  Analyzing links from page https://pypi.org/simple/gemini/
    Found link https://files.pythonhosted.org/packages/43/ff/dfa60e37fc31a7161cfd6ef32e04d301c3c50f667128860c0c6fb5fa9bce/gemini-0.6.2.tar.gz#sha256=02ea2301b9677a6245d82490ee22c8bb78dafa1ae6876003c2c67de2483c439e (from https://pypi.org/simple/gemini/), version: 0.6.2
    Found link https://files.pythonhosted.org/packages/30/f4/b5b5c9843f20b620811e5823552f5f17f674f7687cde083613629760bc32/gemini-0.6.2.1.tar.gz#sha256=dd89eff346a5b6543b480cf1b4aff97b3c740582de734973eb6bc846cf53b629 (from https://pypi.org/simple/gemini/), version: 0.6.2.1
    Found link https://files.pythonhosted.org/packages/76/61/a7e9dcc1e1a41ceb31a0814c44dfe9db212fb49ee2e22eec9cd3b62ac392/gemini-0.6.2.2.tar.gz#sha256=e1ae333c6fbb9ea665f9e1d5fc11d756183ad9149098e17f51e4df0d58078e87 (from https://pypi.org/simple/gemini/), version: 0.6.2.2
    Found link https://files.pythonhosted.org/packages/17/ca/78a2a25c3672f01ec06af2d46f2b63e977a36da7af3ce24878db0ca20b68/gemini-0.6.3.tar.gz#sha256=42b665b0124c2fd798f13170522ca7a8363a9e625232c5ce5989ba0f55ced594 (from https://pypi.org/simple/gemini/), version: 0.6.3
    Found link https://files.pythonhosted.org/packages/f7/af/8110c8df96a9a1f2670b3efb48b5fe289cd852febb83dd29a0217e0865d8/gemini-0.6.3.1.tar.gz#sha256=21bee794075a83a00ceaa9a3005a6bf840f99a9748af06136ff2b89ea87a3936 (from https://pypi.org/simple/gemini/), version: 0.6.3.1
    Found link https://files.pythonhosted.org/packages/6e/c0/31926b1387b44bf6443b4e82ad4a3d935cf9016235f24e15f8a775d9accf/gemini-0.6.3.2.tar.gz#sha256=f344373c8a8cf825146349840d127fe8d145aaebc60ff88d707ad2b41dc47bf3 (from https://pypi.org/simple/gemini/), version: 0.6.3.2
    Found link https://files.pythonhosted.org/packages/6d/40/1b5b8baa5d1a333d4e222323dc2494aff617b05252947a3da7178f6b315a/gemini-0.6.4.tar.gz#sha256=5a9e9370933c4fe4a56e066d477233128c66c3f744f76eb0e67a3d4034044b65 (from https://pypi.org/simple/gemini/), version: 0.6.4
    Found link https://files.pythonhosted.org/packages/83/93/434318713847459abf32d9d22d3a0548d4c1ac8f970e4195c83bbe269134/gemini-0.6.5.tar.gz#sha256=bcae06a6dedf0e7de71d91a9597ffa7d71d0df855d871bf3997a5df5aa2a6efd (from https://pypi.org/simple/gemini/), version: 0.6.5
    Found link https://files.pythonhosted.org/packages/64/7a/dfc0668f2365fbf76ff51d18b80786373f0dbeb0953efe478ba539648c79/gemini-0.7.0.tar.gz#sha256=ca8429415e60f257892f2fff0d66a05092179558f3af37a6f3527f63e14132e3 (from https://pypi.org/simple/gemini/), version: 0.7.0
    Found link https://files.pythonhosted.org/packages/39/c8/de6cd8a6cb6850678ef845535335e4aa0a4bfe148e59e07cfdca2988fd76/gemini-0.7.1.tar.gz#sha256=713ac193d9ca465dbb83ab93de55ba68dee7d104d86289dea4e8e43d9c4c0990 (from https://pypi.org/simple/gemini/), version: 0.7.1
    Found link https://files.pythonhosted.org/packages/ad/01/23de3860bc54f79022ae671edb9d051e99aa649a67d9ccc9f25f145caa7c/gemini-0.8.0.tar.gz#sha256=ae55266c293cf4034d594e2961e8be91dbb2198c6560f7d270cea24cd55d344e (from https://pypi.org/simple/gemini/), version: 0.8.0
    Found link https://files.pythonhosted.org/packages/3b/53/68b01c930ebfc42df09294c052d1975563ab6d11946bf9e52f9cfc4a5224/gemini-0.9.0.tar.gz#sha256=9e3bcc45401abe59dafc97a86945c74cf1ba33eec923b8ba1d56b6fc99f40991 (from https://pypi.org/simple/gemini/), version: 0.9.0
    Found link https://files.pythonhosted.org/packages/1f/ed/86134cf19037c8dcf3cf1b1b591d6ebdc8ce8fbf803521c43a8348e57480/gemini-0.9.1.tar.gz#sha256=6e77e952a1bfee7c716b05b2ff144f76953c49b0be7cc4623738c3e84199cd3b (from https://pypi.org/simple/gemini/), version: 0.9.1
    Found link https://files.pythonhosted.org/packages/c4/a4/121bf42401a591f671d0162f045a185af2c8ee6d08550b95b875fc6e99c5/gemini-0.10.0.tar.gz#sha256=0f70a40947109414b15fdf54042b525c6694e8ecb5e437886fd11bf62b907f78 (from https://pypi.org/simple/gemini/), version: 0.10.0
    Found link https://files.pythonhosted.org/packages/76/8f/b6e79da73c4fd3da57ef50d5feecdf0da2cad757f2d478973073fbeeb0d5/gemini-0.10.1.tar.gz#sha256=201918888025b2033d167847438c211d25ec5ea4b4ee0cb7458d1009441cacce (from https://pypi.org/simple/gemini/), version: 0.10.1
    Found link https://files.pythonhosted.org/packages/2f/c8/ddab3b2a93f153a4c2220dee45ab301a089fa34bd06ff52159488beb73a2/gemini-0.11.0.tar.gz#sha256=643e26899bbeb3dfb16fbdf5b15f63ec6ee99fab3028205d39091b6040d80d0e (from https://pypi.org/simple/gemini/), version: 0.11.0
    Found link https://files.pythonhosted.org/packages/bf/0f/07b69a012047b4b630595ab1936436ded419fe6987296aeb22c0af30db03/gemini-0.12.1.tar.gz#sha256=f4ad224729d729147cf5774ab11a75056c5c7690e689807ce1f72f7a3cd91702 (from https://pypi.org/simple/gemini/), version: 0.12.1
    Found link https://files.pythonhosted.org/packages/32/cc/b02e12272927f6a652f7a4e2e362ce33d84128ad728022b388f6405e05a4/gemini-0.12.2.tar.gz#sha256=bce8e30620ceb592ef788d5e8af2e47a0866d2e43410c65eea64bc30c7a0a247 (from https://pypi.org/simple/gemini/), version: 0.12.2
    Found link https://files.pythonhosted.org/packages/b4/cb/31ecae249ab63282d97bb4cb8797f2de2c757b39a61ade205b7b31c9e59b/gemini-0.13.0.tar.gz#sha256=78f9545c3be6553a54095c8fa9ca4cfa38a667858b09691a7e8b13582cf0569d (from https://pypi.org/simple/gemini/), version: 0.13.0
    Found link https://files.pythonhosted.org/packages/c5/a6/c3986db4e56dfecd799e3516651bb92b29a3a5ac3d9ae1b3b4d9ac9b4d7f/gemini-0.13.1.tar.gz#sha256=5191020c49c598768f4bccf62fbc49f4013ffe62ecf25d71f1fca3f301feb6f2 (from https://pypi.org/simple/gemini/), version: 0.13.1
    Found link https://files.pythonhosted.org/packages/f3/de/79e15399f0c68d8dd26804e7aa578ddd8b8abbe7a21849ef560cd45cf65f/gemini-0.14.0.tar.gz#sha256=d3ded8b775dfd7e6bb7b96cedb7697de33d7bdbc25631b34037f61246934c8a5 (from https://pypi.org/simple/gemini/), version: 0.14.0
    Found link https://files.pythonhosted.org/packages/b9/7a/b6da34f80c66daa7a8265df40d69949d66d29de6ecf08bbe5d6c348f711c/gemini-0.15.0.tar.gz#sha256=83984da09f2678dfed4bbc82fb8988474f33023db8033563583ce87ed54498fa (from https://pypi.org/simple/gemini/), version: 0.15.0
    Found link https://files.pythonhosted.org/packages/44/d0/7ca79202f0cab3018f71b98e6b562095ebc6f0976c148f8a5d278cd8ba21/gemini-0.15.1.tar.gz#sha256=9a8470842e931f740bbdead07ead325e8930e59a35ed9f8b350e5c344e69fc57 (from https://pypi.org/simple/gemini/), version: 0.15.1
    Found link https://files.pythonhosted.org/packages/ea/5f/a151441228614f535864bd9d9ae685f62faef8e84cc4bf13cd493ffaff3a/gemini-0.16.0.tar.gz#sha256=94ab0f142d0d6a20587cb0c89fbb725d17665c5b0dc351fb5224b255764284af (from https://pypi.org/simple/gemini/), version: 0.16.0
    Found link https://files.pythonhosted.org/packages/69/4f/42c5f3b80db785588c516a3c1ce2518a59209d9603db4a7db24df94c119b/gemini-0.16.1.tar.gz#sha256=e0622cf258513cf584bac10655e9e3ef0cc4a35157bc65995419e7c35c98ce8b (from https://pypi.org/simple/gemini/), version: 0.16.1
    Found link https://files.pythonhosted.org/packages/20/3b/0bf73172e803b5b9e93218bb400529dcf4177811ce9ea1261e04ff5bfd2f/gemini-0.16.2.tar.gz#sha256=bebf7efd144cb720307bca15c99faf0e3c43b7dab119e777056ecf0474687ca4 (from https://pypi.org/simple/gemini/), version: 0.16.2
    Found link https://files.pythonhosted.org/packages/a4/25/80a8c70c4f3700a7c42eddaf2f5fbeeda5fa7232ac1e5ec3243468ce43fa/gemini-0.16.3.tar.gz#sha256=8c35e7b64e66cf1b901e522f93022a24383e8edc79798a85b348bc2b48a70bf2 (from https://pypi.org/simple/gemini/), version: 0.16.3
    Found link https://files.pythonhosted.org/packages/8f/f2/842f8aa0faef5c916eb09a45995bb5d6f4813def7b9cca8178a27409a135/gemini-0.17.0.tar.gz#sha256=a241d5a9210989d651bd5b5556981676f10544ad0d80fa35106e665149adf8f7 (from https://pypi.org/simple/gemini/), version: 0.17.0
    Found link https://files.pythonhosted.org/packages/fc/da/08015e9ee8726c334394d439f8d884b41618440288488404263b6f422c04/gemini-0.17.1.tar.gz#sha256=b4e10340ec7c78ad211c4f4569d50304eb88bfb3c9b7a1ca276e59babcb59d12 (from https://pypi.org/simple/gemini/), version: 0.17.1
    Found link https://files.pythonhosted.org/packages/e7/ec/589a09fc434d9e2cb475da6c81a794d9b72d7972e156f4a60b06a14b073d/gemini-0.17.2.tar.gz#sha256=97819681076a2757ba347b1580dafecb1dcd38508c365007489ad1891e9a697d (from https://pypi.org/simple/gemini/), version: 0.17.2
    Found link https://files.pythonhosted.org/packages/6a/57/4d6095c505111bbdc1b4f753ca4827968cf534c043b583dafecda389e4a3/gemini-0.18.0.tar.gz#sha256=ebd338a13c59811e75f720ba669723f17c577611187058b764a85f5184a6573f (from https://pypi.org/simple/gemini/), version: 0.18.0
    Found link https://files.pythonhosted.org/packages/9b/61/69fdfa4153bc2e781954acd7c873509356d820869ca711ded00612b26d8e/gemini-0.18.1.tar.gz#sha256=20c0c867efb89bee4ccce6ef323249c3e73c89573d319edb3e6b8e0575dd3b53 (from https://pypi.org/simple/gemini/), version: 0.18.1
    Found link https://files.pythonhosted.org/packages/94/ac/40a034cacb91f608abae32eac220d3367e6fae9b72c46433c5df6006ecd0/gemini-0.18.2.tar.gz#sha256=8781806c1e0b9955a4f45c078ea26729f1f5dcde4292645f49b1f591eb5d2fe9 (from https://pypi.org/simple/gemini/), version: 0.18.2
    Found link https://files.pythonhosted.org/packages/ad/92/b198270b52b4eb6e7ee84f9a4c7b0484b0cefdf59b814ff0b91fa682a227/gemini-0.18.3.tar.gz#sha256=8ce6fc37cf3a26afacdf6aa446ac607eff156dee010ff70cf567149f5e902a7b (from https://pypi.org/simple/gemini/), version: 0.18.3
    Found link https://files.pythonhosted.org/packages/79/46/d0b4e006fade0c9d17dff935c86946343f74f87f6ed37cb71a25c6d0fc40/gemini-0.30.2.tar.gz#sha256=a1640e375d0dcd7bc899809bd16f53053895e9cfbcad4dee34a6efb281647e7c (from https://pypi.org/simple/gemini/), version: 0.30.2
  Using version 0.30.2 (newest of versions: 0.30.2)
  Created temporary directory: /tmp/pip-unpack-aigcecvl
  Downloading https://files.pythonhosted.org/packages/79/46/d0b4e006fade0c9d17dff935c86946343f74f87f6ed37cb71a25c6d0fc40/gemini-0.30.2.tar.gz (1.6MB)
  Downloading from URL https://files.pythonhosted.org/packages/79/46/d0b4e006fade0c9d17dff935c86946343f74f87f6ed37cb71a25c6d0fc40/gemini-0.30.2.tar.gz#sha256=a1640e375d0dcd7bc899809bd16f53053895e9cfbcad4dee34a6efb281647e7c (from https://pypi.org/simple/gemini/)
  Added gemini==0.30.2 from https://files.pythonhosted.org/packages/79/46/d0b4e006fade0c9d17dff935c86946343f74f87f6ed37cb71a25c6d0fc40/gemini-0.30.2.tar.gz#sha256=a1640e375d0dcd7bc899809bd16f53053895e9cfbcad4dee34a6efb281647e7c to build tracker '/tmp/pip-req-tracker-chfgg4l6'
  Running setup.py (path:/tmp/pip-wheel-zcf3pxu7/gemini/setup.py) egg_info for package gemini
    Running command python setup.py egg_info
    running egg_info
    creating pip-egg-info/gemini.egg-info
    writing top-level names to pip-egg-info/gemini.egg-info/top_level.txt
    writing requirements to pip-egg-info/gemini.egg-info/requires.txt
    writing pip-egg-info/gemini.egg-info/PKG-INFO
    writing dependency_links to pip-egg-info/gemini.egg-info/dependency_links.txt
    writing manifest file 'pip-egg-info/gemini.egg-info/SOURCES.txt'
    reading manifest file 'pip-egg-info/gemini.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no previously-included files found matching 'gemini/annotation_provenance/*'
    warning: no previously-included files found matching '*.vcf.gz*'
    warning: no previously-included files found matching '*.db'
    warning: no previously-included files found matching 'test/*.db'
    warning: no previously-included files found matching '*.vcf'
    writing manifest file 'pip-egg-info/gemini.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-zcf3pxu7/gemini has version 0.30.2, which satisfies requirement gemini==0.30.2 from https://files.pythonhosted.org/packages/79/46/d0b4e006fade0c9d17dff935c86946343f74f87f6ed37cb71a25c6d0fc40/gemini-0.30.2.tar.gz#sha256=a1640e375d0dcd7bc899809bd16f53053895e9cfbcad4dee34a6efb281647e7c
  Removed gemini==0.30.2 from https://files.pythonhosted.org/packages/79/46/d0b4e006fade0c9d17dff935c86946343f74f87f6ed37cb71a25c6d0fc40/gemini-0.30.2.tar.gz#sha256=a1640e375d0dcd7bc899809bd16f53053895e9cfbcad4dee34a6efb281647e7c from build tracker '/tmp/pip-req-tracker-chfgg4l6'
Building wheels for collected packages: gemini
  Created temporary directory: /tmp/pip-wheel-0f2gc448
  Running setup.py bdist_wheel for gemini: started
  Destination directory: /tmp/pip-wheel-0f2gc448
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-zcf3pxu7/gemini/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-0f2gc448
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/gemini
  copying gemini/gemini_stats.py -> build/lib/gemini
  copying gemini/config.py -> build/lib/gemini
  copying gemini/tool_qc.py -> build/lib/gemini
  copying gemini/version.py -> build/lib/gemini
  copying gemini/tool_pathways.py -> build/lib/gemini
  copying gemini/gemini_merge_chunks.py -> build/lib/gemini
  copying gemini/compression.py -> build/lib/gemini
  copying gemini/tool_interactions.py -> build/lib/gemini
  copying gemini/gemini_utils.py -> build/lib/gemini
  copying gemini/pdict.py -> build/lib/gemini
  copying gemini/gemini_constants.py -> build/lib/gemini
  copying gemini/gemini_load_chunk.py -> build/lib/gemini
  copying gemini/structural_variants.py -> build/lib/gemini
  copying gemini/gemini_subjects.py -> build/lib/gemini
  copying gemini/tool_lof_sieve.py -> build/lib/gemini
  copying gemini/gim.py -> build/lib/gemini
  copying gemini/gemini_actionable_mutations.py -> build/lib/gemini
  copying gemini/gemini_browser.py -> build/lib/gemini
  copying gemini/dgidb.py -> build/lib/gemini
  copying gemini/genewise.py -> build/lib/gemini
  copying gemini/gemini_query.py -> build/lib/gemini
  copying gemini/database.py -> build/lib/gemini
  copying gemini/ped.py -> build/lib/gemini
  copying gemini/tool_fusions.py -> build/lib/gemini
  copying gemini/anno_info.py -> build/lib/gemini
  copying gemini/gemini_plot.py -> build/lib/gemini
  copying gemini/install-data.py -> build/lib/gemini
  copying gemini/gemini_windower.py -> build/lib/gemini
  copying gemini/infotag.py -> build/lib/gemini
  copying gemini/annotations.py -> build/lib/gemini
  copying gemini/gemini_bcolz.py -> build/lib/gemini
  copying gemini/gemini_main.py -> build/lib/gemini
  copying gemini/gemini_amend.py -> build/lib/gemini
  copying gemini/GeminiQuery.py -> build/lib/gemini
  copying gemini/gene_table.py -> build/lib/gemini
  copying gemini/sql_utils.py -> build/lib/gemini
  copying gemini/stats.py -> build/lib/gemini
  copying gemini/tool_homozygosity_runs.py -> build/lib/gemini
  copying gemini/gemini_load.py -> build/lib/gemini
  copying gemini/popgen.py -> build/lib/gemini
  copying gemini/mendelianerror.py -> build/lib/gemini
  copying gemini/gemini_annotate.py -> build/lib/gemini
  copying gemini/tool_burden_tests.py -> build/lib/gemini
  copying gemini/gemini_region.py -> build/lib/gemini
  copying gemini/gemini_update.py -> build/lib/gemini
  copying gemini/__init__.py -> build/lib/gemini
  copying gemini/gemini_dump.py -> build/lib/gemini
  copying gemini/gemini_set_somatic.py -> build/lib/gemini
  copying gemini/gemini_dbinfo.py -> build/lib/gemini
  creating build/lib/gemini/scripts
  copying gemini/scripts/gemini_install.py -> build/lib/gemini/scripts
  copying gemini/scripts/__init__.py -> build/lib/gemini/scripts
  creating build/lib/gemini/tests
  copying gemini/tests/__init__.py -> build/lib/gemini/tests
  creating build/lib/gemini/data
  copying gemini/data/__init__.py -> build/lib/gemini/data
  running egg_info
  writing gemini.egg-info/PKG-INFO
  writing requirements to gemini.egg-info/requires.txt
  writing top-level names to gemini.egg-info/top_level.txt
  writing dependency_links to gemini.egg-info/dependency_links.txt
  reading manifest file 'gemini.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files found matching 'gemini/annotation_provenance/*'
  warning: no previously-included files found matching '*.vcf.gz*'
  warning: no previously-included files found matching '*.db'
  warning: no previously-included files found matching 'test/*.db'
  warning: no previously-included files found matching '*.vcf'
  writing manifest file 'gemini.egg-info/SOURCES.txt'
  creating build/lib/gemini/static
  creating build/lib/gemini/static/css
  copying gemini/static/css/gemini.css -> build/lib/gemini/static/css
  creating build/lib/gemini/static/img
  copying gemini/static/img/gemini.png -> build/lib/gemini/static/img
  creating build/lib/gemini/static/third_party
  creating build/lib/gemini/static/third_party/bootstrap
  creating build/lib/gemini/static/third_party/bootstrap/css
  copying gemini/static/third_party/bootstrap/css/bootstrap-responsive.css -> build/lib/gemini/static/third_party/bootstrap/css
  copying gemini/static/third_party/bootstrap/css/bootstrap-responsive.min.css -> build/lib/gemini/static/third_party/bootstrap/css
  copying gemini/static/third_party/bootstrap/css/bootstrap-rowlink.css -> build/lib/gemini/static/third_party/bootstrap/css
  copying gemini/static/third_party/bootstrap/css/bootstrap-rowlink.min.css -> build/lib/gemini/static/third_party/bootstrap/css
  copying gemini/static/third_party/bootstrap/css/bootstrap.css -> build/lib/gemini/static/third_party/bootstrap/css
  copying gemini/static/third_party/bootstrap/css/bootstrap.min.css -> build/lib/gemini/static/third_party/bootstrap/css
  creating build/lib/gemini/static/third_party/bootstrap/img
  copying gemini/static/third_party/bootstrap/img/glyphicons-halflings-white.png -> build/lib/gemini/static/third_party/bootstrap/img
  copying gemini/static/third_party/bootstrap/img/glyphicons-halflings.png -> build/lib/gemini/static/third_party/bootstrap/img
  creating build/lib/gemini/static/third_party/bootstrap/js
  copying gemini/static/third_party/bootstrap/js/bootstrap-rowlink.js -> build/lib/gemini/static/third_party/bootstrap/js
  copying gemini/static/third_party/bootstrap/js/bootstrap-rowlink.min.js -> build/lib/gemini/static/third_party/bootstrap/js
  copying gemini/static/third_party/bootstrap/js/bootstrap.js -> build/lib/gemini/static/third_party/bootstrap/js
  copying gemini/static/third_party/bootstrap/js/bootstrap.min.js -> build/lib/gemini/static/third_party/bootstrap/js
  creating build/lib/gemini/static/third_party/jquery
  copying gemini/static/third_party/jquery/jquery-1.7.1.js -> build/lib/gemini/static/third_party/jquery
  creating build/lib/gemini/static/third_party/jquery-ui
  copying gemini/static/third_party/jquery-ui/jquery-ui.min.js -> build/lib/gemini/static/third_party/jquery-ui
  creating build/lib/gemini/views
  copying gemini/views/auto_dom.j2.html -> build/lib/gemini/views
  copying gemini/views/auto_rec.j2.html -> build/lib/gemini/views
  copying gemini/views/base.j2.html -> build/lib/gemini/views
  copying gemini/views/db_schema.j2.html -> build/lib/gemini/views
  copying gemini/views/de_novo.j2.html -> build/lib/gemini/views
  copying gemini/views/index.j2.html -> build/lib/gemini/views
  copying gemini/views/query.j2.html -> build/lib/gemini/views
  copying gemini/scripts/__init__.pyc -> build/lib/gemini/scripts
  copying gemini/scripts/gemini -> build/lib/gemini/scripts
  copying gemini/data/gemini.conf -> build/lib/gemini/data
  running build_scripts
  creating build/scripts-3.5
  copying and adjusting gemini/scripts/gemini -> build/scripts-3.5
  changing mode of build/scripts-3.5/gemini from 644 to 755
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_stats.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/config.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_qc.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/version.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_pathways.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_merge_chunks.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/compression.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_interactions.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_utils.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/pdict.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_constants.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_load_chunk.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/structural_variants.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_subjects.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_lof_sieve.py -> build/bdist.linux-armv7l/wheel/gemini
  creating build/bdist.linux-armv7l/wheel/gemini/tests
  copying build/lib/gemini/tests/__init__.py -> build/bdist.linux-armv7l/wheel/gemini/tests
  copying build/lib/gemini/gim.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_actionable_mutations.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_browser.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/dgidb.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/genewise.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_query.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/database.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/ped.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_fusions.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/anno_info.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_plot.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/install-data.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_windower.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/infotag.py -> build/bdist.linux-armv7l/wheel/gemini
  creating build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/auto_dom.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/auto_rec.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/index.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/de_novo.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/db_schema.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/base.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/views/query.j2.html -> build/bdist.linux-armv7l/wheel/gemini/views
  copying build/lib/gemini/annotations.py -> build/bdist.linux-armv7l/wheel/gemini
  creating build/bdist.linux-armv7l/wheel/gemini/scripts
  copying build/lib/gemini/scripts/gemini -> build/bdist.linux-armv7l/wheel/gemini/scripts
  copying build/lib/gemini/scripts/gemini_install.py -> build/bdist.linux-armv7l/wheel/gemini/scripts
  copying build/lib/gemini/scripts/__init__.pyc -> build/bdist.linux-armv7l/wheel/gemini/scripts
  copying build/lib/gemini/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/gemini/scripts
  copying build/lib/gemini/gemini_bcolz.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_main.py -> build/bdist.linux-armv7l/wheel/gemini
  creating build/bdist.linux-armv7l/wheel/gemini/data
  copying build/lib/gemini/data/gemini.conf -> build/bdist.linux-armv7l/wheel/gemini/data
  copying build/lib/gemini/data/__init__.py -> build/bdist.linux-armv7l/wheel/gemini/data
  copying build/lib/gemini/gemini_amend.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/GeminiQuery.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gene_table.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/sql_utils.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/stats.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_homozygosity_runs.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_load.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/popgen.py -> build/bdist.linux-armv7l/wheel/gemini
  creating build/bdist.linux-armv7l/wheel/gemini/static
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  copying build/lib/gemini/static/third_party/bootstrap/css/bootstrap-responsive.css -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  copying build/lib/gemini/static/third_party/bootstrap/css/bootstrap-responsive.min.css -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  copying build/lib/gemini/static/third_party/bootstrap/css/bootstrap-rowlink.min.css -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  copying build/lib/gemini/static/third_party/bootstrap/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  copying build/lib/gemini/static/third_party/bootstrap/css/bootstrap.css -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  copying build/lib/gemini/static/third_party/bootstrap/css/bootstrap-rowlink.css -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/css
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/js
  copying build/lib/gemini/static/third_party/bootstrap/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/js
  copying build/lib/gemini/static/third_party/bootstrap/js/bootstrap-rowlink.js -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/js
  copying build/lib/gemini/static/third_party/bootstrap/js/bootstrap-rowlink.min.js -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/js
  copying build/lib/gemini/static/third_party/bootstrap/js/bootstrap.js -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/js
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/img
  copying build/lib/gemini/static/third_party/bootstrap/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/img
  copying build/lib/gemini/static/third_party/bootstrap/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/bootstrap/img
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party/jquery
  copying build/lib/gemini/static/third_party/jquery/jquery-1.7.1.js -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/jquery
  creating build/bdist.linux-armv7l/wheel/gemini/static/third_party/jquery-ui
  copying build/lib/gemini/static/third_party/jquery-ui/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/gemini/static/third_party/jquery-ui
  creating build/bdist.linux-armv7l/wheel/gemini/static/css
  copying build/lib/gemini/static/css/gemini.css -> build/bdist.linux-armv7l/wheel/gemini/static/css
  creating build/bdist.linux-armv7l/wheel/gemini/static/img
  copying build/lib/gemini/static/img/gemini.png -> build/bdist.linux-armv7l/wheel/gemini/static/img
  copying build/lib/gemini/mendelianerror.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_annotate.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/tool_burden_tests.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_region.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_update.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/__init__.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_dump.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_set_somatic.py -> build/bdist.linux-armv7l/wheel/gemini
  copying build/lib/gemini/gemini_dbinfo.py -> build/bdist.linux-armv7l/wheel/gemini
  running install_egg_info
  Copying gemini.egg-info to build/bdist.linux-armv7l/wheel/gemini-0.30.2-py3.5.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/gemini-0.30.2.data
  creating build/bdist.linux-armv7l/wheel/gemini-0.30.2.data/scripts
  copying build/scripts-3.5/gemini -> build/bdist.linux-armv7l/wheel/gemini-0.30.2.data/scripts
  changing mode of build/bdist.linux-armv7l/wheel/gemini-0.30.2.data/scripts/gemini to 755
  adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
  creating build/bdist.linux-armv7l/wheel/gemini-0.30.2.dist-info/WHEEL
  creating '/tmp/pip-wheel-0f2gc448/gemini-0.30.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
  adding 'gemini/GeminiQuery.py'
  adding 'gemini/__init__.py'
  adding 'gemini/anno_info.py'
  adding 'gemini/annotations.py'
  adding 'gemini/compression.py'
  adding 'gemini/config.py'
  adding 'gemini/database.py'
  adding 'gemini/dgidb.py'
  adding 'gemini/gemini_actionable_mutations.py'
  adding 'gemini/gemini_amend.py'
  adding 'gemini/gemini_annotate.py'
  adding 'gemini/gemini_bcolz.py'
  adding 'gemini/gemini_browser.py'
  adding 'gemini/gemini_constants.py'
  adding 'gemini/gemini_dbinfo.py'
  adding 'gemini/gemini_dump.py'
  adding 'gemini/gemini_load.py'
  adding 'gemini/gemini_load_chunk.py'
  adding 'gemini/gemini_main.py'
  adding 'gemini/gemini_merge_chunks.py'
  adding 'gemini/gemini_plot.py'
  adding 'gemini/gemini_query.py'
  adding 'gemini/gemini_region.py'
  adding 'gemini/gemini_set_somatic.py'
  adding 'gemini/gemini_stats.py'
  adding 'gemini/gemini_subjects.py'
  adding 'gemini/gemini_update.py'
  adding 'gemini/gemini_utils.py'
  adding 'gemini/gemini_windower.py'
  adding 'gemini/gene_table.py'
  adding 'gemini/genewise.py'
  adding 'gemini/gim.py'
  adding 'gemini/infotag.py'
  adding 'gemini/install-data.py'
  adding 'gemini/mendelianerror.py'
  adding 'gemini/pdict.py'
  adding 'gemini/ped.py'
  adding 'gemini/popgen.py'
  adding 'gemini/sql_utils.py'
  adding 'gemini/stats.py'
  adding 'gemini/structural_variants.py'
  adding 'gemini/tool_burden_tests.py'
  adding 'gemini/tool_fusions.py'
  adding 'gemini/tool_homozygosity_runs.py'
  adding 'gemini/tool_interactions.py'
  adding 'gemini/tool_lof_sieve.py'
  adding 'gemini/tool_pathways.py'
  adding 'gemini/tool_qc.py'
  adding 'gemini/version.py'
  adding 'gemini/data/__init__.py'
  adding 'gemini/data/gemini.conf'
  adding 'gemini/scripts/__init__.py'
  adding 'gemini/scripts/__init__.pyc'
  adding 'gemini/scripts/gemini'
  adding 'gemini/scripts/gemini_install.py'
  adding 'gemini/static/css/gemini.css'
  adding 'gemini/static/img/gemini.png'
  adding 'gemini/static/third_party/bootstrap/css/bootstrap-responsive.css'
  adding 'gemini/static/third_party/bootstrap/css/bootstrap-responsive.min.css'
  adding 'gemini/static/third_party/bootstrap/css/bootstrap-rowlink.css'
  adding 'gemini/static/third_party/bootstrap/css/bootstrap-rowlink.min.css'
  adding 'gemini/static/third_party/bootstrap/css/bootstrap.css'
  adding 'gemini/static/third_party/bootstrap/css/bootstrap.min.css'
  adding 'gemini/static/third_party/bootstrap/img/glyphicons-halflings-white.png'
  adding 'gemini/static/third_party/bootstrap/img/glyphicons-halflings.png'
  adding 'gemini/static/third_party/bootstrap/js/bootstrap-rowlink.js'
  adding 'gemini/static/third_party/bootstrap/js/bootstrap-rowlink.min.js'
  adding 'gemini/static/third_party/bootstrap/js/bootstrap.js'
  adding 'gemini/static/third_party/bootstrap/js/bootstrap.min.js'
  adding 'gemini/static/third_party/jquery/jquery-1.7.1.js'
  adding 'gemini/static/third_party/jquery-ui/jquery-ui.min.js'
  adding 'gemini/tests/__init__.py'
  adding 'gemini/views/auto_dom.j2.html'
  adding 'gemini/views/auto_rec.j2.html'
  adding 'gemini/views/base.j2.html'
  adding 'gemini/views/db_schema.j2.html'
  adding 'gemini/views/de_novo.j2.html'
  adding 'gemini/views/index.j2.html'
  adding 'gemini/views/query.j2.html'
  adding 'gemini-0.30.2.data/scripts/gemini'
  adding 'gemini-0.30.2.dist-info/LICENSE'
  adding 'gemini-0.30.2.dist-info/METADATA'
  adding 'gemini-0.30.2.dist-info/WHEEL'
  adding 'gemini-0.30.2.dist-info/top_level.txt'
  adding 'gemini-0.30.2.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for gemini: finished with status 'done'
  Stored in directory: /tmp/tmp7cp6vnbu
Successfully built gemini
Cleaning up...
  Removing source in /tmp/pip-wheel-zcf3pxu7/gemini
Removed build tracker '/tmp/pip-req-tracker-chfgg4l6'