2019-07-12T07:54:59 Created temporary directory: /tmp/pip-ephem-wheel-cache-npa8ha88
2019-07-12T07:54:59 Created temporary directory: /tmp/pip-req-tracker-tvufob1c
2019-07-12T07:54:59 Created requirements tracker '/tmp/pip-req-tracker-tvufob1c'
2019-07-12T07:54:59 Created temporary directory: /tmp/pip-wheel-lmeappb9
2019-07-12T07:54:59 Collecting refgenie==0.5.0
2019-07-12T07:54:59   1 location(s) to search for versions of refgenie:
2019-07-12T07:54:59   * https://pypi.org/simple/refgenie/
2019-07-12T07:54:59   Getting page https://pypi.org/simple/refgenie/
2019-07-12T07:55:00   Analyzing links from page https://pypi.org/simple/refgenie/
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/17/54/a0cc0afa24f558e0be77f717080c10e371750e79ffb1ac501485ca4fdfea/refgenie-0.0.1.tar.gz#sha256=71d69e2c21b08e59c68c1ef46c41542faca4e91efbb46a5745e3b3e5e199882e (from https://pypi.org/simple/refgenie/), version: 0.0.1
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/d9/ba/078d0aaadb0f9a93e9db100b377680c6308f24eef02e5b2c68376a6f4d34/refgenie-0.3.0.tar.gz#sha256=167e78d6dc3071c42ea651bdad6a8438f7b99b285a631ec79a6718ffa0ec07d1 (from https://pypi.org/simple/refgenie/), version: 0.3.0
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/b4/22/f4d122acae18ccda74ffbc4bd9e4b02aae9d6fa0dd34f0abed84abf815da/refgenie-0.3.1.tar.gz#sha256=7acd535abaaa519d793fa3286dd03c14e65d34590d2c6bf273a108fcf07c943b (from https://pypi.org/simple/refgenie/), version: 0.3.1
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/e6/11/e570020cef6b691bf9f2b040d18b5fed4536972b31a0bcb4ce3e7be5c2b5/refgenie-0.3.2.tar.gz#sha256=27bdf63883dc46debeb65713271247ced4276801c15c21390b9a07a34a983dd8 (from https://pypi.org/simple/refgenie/), version: 0.3.2
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/f5/7c/baccfeed0ab702f60f27f29801089de8744793233e7e9acdcc0762f5dbe1/refgenie-0.4.0.tar.gz#sha256=aa4fb08141f881431d21eab5be1b2442aaeab385916b2a9299f2333765286b57 (from https://pypi.org/simple/refgenie/), version: 0.4.0
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/d2/01/2ef4810d4bbfae03bfc83ec42fcad0889d266bdb07145cd15b07cec010fc/refgenie-0.4.1.tar.gz#sha256=45b3aaf1cf4cc09f36faeb39ac6aff4a80087379f4a90da36cbca8f0a9be7af4 (from https://pypi.org/simple/refgenie/), version: 0.4.1
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/72/e8/bcdd841edaa175dca9baff44dfe19cfa9d657266695413453c7fa3750040/refgenie-0.4.2.tar.gz#sha256=970132fa7d93b42457e9bffed9dceb816d0b8033825054e73da8c055d93cd326 (from https://pypi.org/simple/refgenie/), version: 0.4.2
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/eb/0b/0f524131a16ed7f61525207b33961195a024c02b297945e0b8a2e1e00610/refgenie-0.4.3.tar.gz#sha256=1b58f786ec82a9b2504f809d903f012e283758148ed94fdc430adbcbe7794f71 (from https://pypi.org/simple/refgenie/), version: 0.4.3
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/70/83/55da1456345a0aa79188f7dbe5fc40cc926b218c969d371aa91cde4857e4/refgenie-0.4.4.tar.gz#sha256=89d7edcb304a3ca966b158748d366e9e12fdc1ce296b3397d16c6f65eaf7d25b (from https://pypi.org/simple/refgenie/), version: 0.4.4
2019-07-12T07:55:00     Found link https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14 (from https://pypi.org/simple/refgenie/), version: 0.5.0
2019-07-12T07:55:00   Using version 0.5.0 (newest of versions: 0.5.0)
2019-07-12T07:55:00   Created temporary directory: /tmp/pip-unpack-_mad7xnl
2019-07-12T07:55:00   Downloading https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz
2019-07-12T07:55:00   Downloading from URL https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14 (from https://pypi.org/simple/refgenie/)
2019-07-12T07:55:00   Added refgenie==0.5.0 from https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14 to build tracker '/tmp/pip-req-tracker-tvufob1c'
2019-07-12T07:55:00     Running setup.py (path:/tmp/pip-wheel-lmeappb9/refgenie/setup.py) egg_info for package refgenie
2019-07-12T07:55:00     Running command python setup.py egg_info
2019-07-12T07:55:02     Warning -- couldn't convert README to rst
2019-07-12T07:55:02     running egg_info
2019-07-12T07:55:02     creating pip-egg-info/refgenie.egg-info
2019-07-12T07:55:02     writing requirements to pip-egg-info/refgenie.egg-info/requires.txt
2019-07-12T07:55:02     writing pip-egg-info/refgenie.egg-info/PKG-INFO
2019-07-12T07:55:02     writing dependency_links to pip-egg-info/refgenie.egg-info/dependency_links.txt
2019-07-12T07:55:02     writing top-level names to pip-egg-info/refgenie.egg-info/top_level.txt
2019-07-12T07:55:02     writing entry points to pip-egg-info/refgenie.egg-info/entry_points.txt
2019-07-12T07:55:02     writing manifest file 'pip-egg-info/refgenie.egg-info/SOURCES.txt'
2019-07-12T07:55:03     reading manifest file 'pip-egg-info/refgenie.egg-info/SOURCES.txt'
2019-07-12T07:55:03     reading manifest template 'MANIFEST.in'
2019-07-12T07:55:03     writing manifest file 'pip-egg-info/refgenie.egg-info/SOURCES.txt'
2019-07-12T07:55:03     Maybe try:

2019-07-12T07:55:03         sudo apt-get install pandoc
2019-07-12T07:55:03     See http://johnmacfarlane.net/pandoc/installing.html
2019-07-12T07:55:03     for installation options
2019-07-12T07:55:03     ---------------------------------------------------------------

2019-07-12T07:55:03   Source in /tmp/pip-wheel-lmeappb9/refgenie has version 0.5.0, which satisfies requirement refgenie==0.5.0 from https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14
2019-07-12T07:55:03   Removed refgenie==0.5.0 from https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14 from build tracker '/tmp/pip-req-tracker-tvufob1c'
2019-07-12T07:55:03 Building wheels for collected packages: refgenie
2019-07-12T07:55:03   Created temporary directory: /tmp/pip-wheel-nx064lzm
2019-07-12T07:55:03   Building wheel for refgenie (setup.py): started
2019-07-12T07:55:03   Destination directory: /tmp/pip-wheel-nx064lzm
2019-07-12T07:55:03   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-lmeappb9/refgenie/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nx064lzm
2019-07-12T07:55:05   Maybe try:

2019-07-12T07:55:05       sudo apt-get install pandoc
2019-07-12T07:55:05   See http://johnmacfarlane.net/pandoc/installing.html
2019-07-12T07:55:05   for installation options
2019-07-12T07:55:05   ---------------------------------------------------------------

2019-07-12T07:55:05   Warning -- couldn't convert README to rst
2019-07-12T07:55:05   running bdist_wheel
2019-07-12T07:55:05   running build
2019-07-12T07:55:05   running build_py
2019-07-12T07:55:05   creating build
2019-07-12T07:55:05   creating build/lib
2019-07-12T07:55:05   creating build/lib/refgenie
2019-07-12T07:55:05   copying refgenie/exceptions.py -> build/lib/refgenie
2019-07-12T07:55:05   copying refgenie/__init__.py -> build/lib/refgenie
2019-07-12T07:55:05   copying refgenie/asset_build_packages.py -> build/lib/refgenie
2019-07-12T07:55:05   copying refgenie/_version.py -> build/lib/refgenie
2019-07-12T07:55:05   copying refgenie/refgenie.py -> build/lib/refgenie
2019-07-12T07:55:05   copying refgenie/build_all_genome.py -> build/lib/refgenie
2019-07-12T07:55:05   running egg_info
2019-07-12T07:55:05   writing requirements to refgenie.egg-info/requires.txt
2019-07-12T07:55:05   writing refgenie.egg-info/PKG-INFO
2019-07-12T07:55:05   writing top-level names to refgenie.egg-info/top_level.txt
2019-07-12T07:55:05   writing dependency_links to refgenie.egg-info/dependency_links.txt
2019-07-12T07:55:05   writing entry points to refgenie.egg-info/entry_points.txt
2019-07-12T07:55:05   reading manifest file 'refgenie.egg-info/SOURCES.txt'
2019-07-12T07:55:05   reading manifest template 'MANIFEST.in'
2019-07-12T07:55:05   writing manifest file 'refgenie.egg-info/SOURCES.txt'
2019-07-12T07:55:05   copying refgenie/refgenie.yaml -> build/lib/refgenie
2019-07-12T07:55:05   Fixing build/lib/refgenie/exceptions.py build/lib/refgenie/__init__.py build/lib/refgenie/asset_build_packages.py build/lib/refgenie/_version.py build/lib/refgenie/refgenie.py build/lib/refgenie/build_all_genome.py
2019-07-12T07:55:05   Skipping optional fixer: buffer
2019-07-12T07:55:06   Skipping optional fixer: idioms
2019-07-12T07:55:07   Skipping optional fixer: set_literal
2019-07-12T07:55:07   Skipping optional fixer: ws_comma
2019-07-12T07:55:10   Fixing build/lib/refgenie/exceptions.py build/lib/refgenie/__init__.py build/lib/refgenie/asset_build_packages.py build/lib/refgenie/_version.py build/lib/refgenie/refgenie.py build/lib/refgenie/build_all_genome.py
2019-07-12T07:55:10   Skipping optional fixer: buffer
2019-07-12T07:55:10   Skipping optional fixer: idioms
2019-07-12T07:55:11   Skipping optional fixer: set_literal
2019-07-12T07:55:12   Skipping optional fixer: ws_comma
2019-07-12T07:55:12   installing to build/bdist.linux-armv7l/wheel
2019-07-12T07:55:12   running install
2019-07-12T07:55:12   running install_lib
2019-07-12T07:55:12   creating build/bdist.linux-armv7l
2019-07-12T07:55:12   creating build/bdist.linux-armv7l/wheel
2019-07-12T07:55:12   creating build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/exceptions.py -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/__init__.py -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/asset_build_packages.py -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/_version.py -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/refgenie.py -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/build_all_genome.py -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   copying build/lib/refgenie/refgenie.yaml -> build/bdist.linux-armv7l/wheel/refgenie
2019-07-12T07:55:12   running install_egg_info
2019-07-12T07:55:12   Copying refgenie.egg-info to build/bdist.linux-armv7l/wheel/refgenie-0.5.0-py3.5.egg-info
2019-07-12T07:55:12   running install_scripts
2019-07-12T07:55:12   creating build/bdist.linux-armv7l/wheel/refgenie-0.5.0.dist-info/WHEEL
2019-07-12T07:55:13   Building wheel for refgenie (setup.py): finished with status 'done'
2019-07-12T07:55:13   Stored in directory: /tmp/tmp9ngp0ald
2019-07-12T07:55:13 Successfully built refgenie
2019-07-12T07:55:13 Cleaning up...
2019-07-12T07:55:13   Removing source in /tmp/pip-wheel-lmeappb9/refgenie
2019-07-12T07:55:13 Removed build tracker '/tmp/pip-req-tracker-tvufob1c'