2019-07-12T23:03:16 Created temporary directory: /tmp/pip-ephem-wheel-cache-h29gzjvr
2019-07-12T23:03:16 Created temporary directory: /tmp/pip-req-tracker-fzi1sqgl
2019-07-12T23:03:16 Created requirements tracker '/tmp/pip-req-tracker-fzi1sqgl'
2019-07-12T23:03:16 Created temporary directory: /tmp/pip-wheel-dy3ft51y
2019-07-12T23:03:16 Collecting AdaptivePELE==1.6
2019-07-12T23:03:16   1 location(s) to search for versions of AdaptivePELE:
2019-07-12T23:03:16   * https://pypi.org/simple/adaptivepele/
2019-07-12T23:03:16   Getting page https://pypi.org/simple/adaptivepele/
2019-07-12T23:03:16   Analyzing links from page https://pypi.org/simple/adaptivepele/
2019-07-12T23:03:16     Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2019-07-12T23:03:16     Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2019-07-12T23:03:16     Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2019-07-12T23:03:16   Using version 1.6 (newest of versions: 1.6)
2019-07-12T23:03:16   Created temporary directory: /tmp/pip-unpack-mnqpype5
2019-07-12T23:03:16   Downloading https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz (4.5MB)
2019-07-12T23:03:16   Downloading from URL https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/)
2019-07-12T23:03:19   Added AdaptivePELE==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 to build tracker '/tmp/pip-req-tracker-fzi1sqgl'
2019-07-12T23:03:19     Running setup.py (path:/tmp/pip-wheel-dy3ft51y/AdaptivePELE/setup.py) egg_info for package AdaptivePELE
2019-07-12T23:03:19     Running command python setup.py egg_info
2019-07-12T23:03:21     Warning: 'classifiers' should be a list, got type 'tuple'
2019-07-12T23:03:21     running egg_info
2019-07-12T23:03:21     creating pip-egg-info/AdaptivePELE.egg-info
2019-07-12T23:03:21     writing pip-egg-info/AdaptivePELE.egg-info/PKG-INFO
2019-07-12T23:03:21     writing dependency_links to pip-egg-info/AdaptivePELE.egg-info/dependency_links.txt
2019-07-12T23:03:21     writing requirements to pip-egg-info/AdaptivePELE.egg-info/requires.txt
2019-07-12T23:03:21     writing top-level names to pip-egg-info/AdaptivePELE.egg-info/top_level.txt
2019-07-12T23:03:21     writing manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
2019-07-12T23:03:21     reading manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
2019-07-12T23:03:21     reading manifest template 'MANIFEST.in'
2019-07-12T23:03:21     writing manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
2019-07-12T23:03:21   Source in /tmp/pip-wheel-dy3ft51y/AdaptivePELE has version 1.6, which satisfies requirement AdaptivePELE==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5
2019-07-12T23:03:21   Removed AdaptivePELE==1.6 from https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 from build tracker '/tmp/pip-req-tracker-fzi1sqgl'
2019-07-12T23:03:21 Building wheels for collected packages: AdaptivePELE
2019-07-12T23:03:21   Created temporary directory: /tmp/pip-wheel-22to3q6f
2019-07-12T23:03:21   Building wheel for AdaptivePELE (setup.py): started
2019-07-12T23:03:21   Destination directory: /tmp/pip-wheel-22to3q6f
2019-07-12T23:03:21   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-dy3ft51y/AdaptivePELE/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-22to3q6f
2019-07-12T23:03:23   Warning: 'classifiers' should be a list, got type 'tuple'
2019-07-12T23:03:24   running bdist_wheel
2019-07-12T23:03:24   running build
2019-07-12T23:03:24   running build_py
2019-07-12T23:03:24   creating build
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-12T23:03:24   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-12T23:03:24   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-12T23:03:24   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-12T23:03:24   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-12T23:03:24   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-12T23:03:24   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-12T23:03:24   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-12T23:03:24   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-12T23:03:24   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-12T23:03:24   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-12T23:03:24   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-12T23:03:24   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-12T23:03:24   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-12T23:03:24   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-12T23:03:24   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-12T23:03:24   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-12T23:03:24   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-12T23:03:24   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-12T23:03:24   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-12T23:03:24   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-12T23:03:24   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-12T23:03:24   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-12T23:03:24   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-12T23:03:24   creating build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-12T23:03:24   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-12T23:03:24   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-12T23:03:24   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-12T23:03:24   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-12T23:03:24   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-12T23:03:24   running build_ext
2019-07-12T23:03:24   skipping 'AdaptivePELE/atomset/atomset.c' Cython extension (up-to-date)
2019-07-12T23:03:24   building 'AdaptivePELE.atomset.atomset' extension
2019-07-12T23:03:24   creating build/temp.linux-armv7l-3.7
2019-07-12T23:03:24   creating build/temp.linux-armv7l-3.7/AdaptivePELE
2019-07-12T23:03:24   creating build/temp.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-12T23:03:24   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.o
2019-07-12T23:03:25   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-12T23:03:25                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-12T23:03:25                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-12T23:03:25                    from AdaptivePELE/atomset/atomset.c:610:
2019-07-12T23:03:25   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-12T23:03:25    #warning "Using deprecated NumPy API, disable it with " \
2019-07-12T23:03:25     ^~~~~~~
2019-07-12T23:05:17   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so
2019-07-12T23:05:17   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2019-07-12T23:05:17   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2019-07-12T23:05:17   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2019-07-12T23:05:18   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-12T23:05:18                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-12T23:05:18                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-12T23:05:18                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2019-07-12T23:05:18   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-12T23:05:18    #warning "Using deprecated NumPy API, disable it with " \
2019-07-12T23:05:18     ^~~~~~~
2019-07-12T23:05:41   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so
2019-07-12T23:05:42   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2019-07-12T23:05:42   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2019-07-12T23:05:42   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.o
2019-07-12T23:05:42   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-12T23:05:42                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-12T23:05:42                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-12T23:05:42                    from AdaptivePELE/atomset/RMSDCalculator.c:502:
2019-07-12T23:05:42   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-12T23:05:42    #warning "Using deprecated NumPy API, disable it with " \
2019-07-12T23:05:42     ^~~~~~~
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c: In function ‘__Pyx__ExceptionSave’:
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8544:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-12T23:05:42        *type = tstate->exc_type;
2019-07-12T23:05:42                        ^~~~~~~~
2019-07-12T23:05:42                        curexc_type
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8545:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-12T23:05:42        *value = tstate->exc_value;
2019-07-12T23:05:42                         ^~~~~~~~~
2019-07-12T23:05:42                         curexc_value
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8546:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-12T23:05:42        *tb = tstate->exc_traceback;
2019-07-12T23:05:42                      ^~~~~~~~~~~~~
2019-07-12T23:05:42                      curexc_traceback
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c: In function ‘__Pyx__ExceptionReset’:
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8553:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-12T23:05:42        tmp_type = tstate->exc_type;
2019-07-12T23:05:42                           ^~~~~~~~
2019-07-12T23:05:42                           curexc_type
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8554:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-12T23:05:42        tmp_value = tstate->exc_value;
2019-07-12T23:05:42                            ^~~~~~~~~
2019-07-12T23:05:42                            curexc_value
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8555:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-12T23:05:42        tmp_tb = tstate->exc_traceback;
2019-07-12T23:05:42                         ^~~~~~~~~~~~~
2019-07-12T23:05:42                         curexc_traceback
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8556:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-12T23:05:42        tstate->exc_type = type;
2019-07-12T23:05:42                ^~~~~~~~
2019-07-12T23:05:42                curexc_type
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8557:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-12T23:05:42        tstate->exc_value = value;
2019-07-12T23:05:42                ^~~~~~~~~
2019-07-12T23:05:42                curexc_value
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8558:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-12T23:05:42        tstate->exc_traceback = tb;
2019-07-12T23:05:42                ^~~~~~~~~~~~~
2019-07-12T23:05:42                curexc_traceback
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c: In function ‘__Pyx__GetException’:
2019-07-12T23:05:42   AdaptivePELE/atomset/RMSDCalculator.c:8613:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-12T23:05:43        tmp_type = tstate->exc_type;
2019-07-12T23:05:43                           ^~~~~~~~
2019-07-12T23:05:43                           curexc_type
2019-07-12T23:05:43   AdaptivePELE/atomset/RMSDCalculator.c:8614:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-12T23:05:43        tmp_value = tstate->exc_value;
2019-07-12T23:05:43                            ^~~~~~~~~
2019-07-12T23:05:43                            curexc_value
2019-07-12T23:05:43   AdaptivePELE/atomset/RMSDCalculator.c:8615:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-12T23:05:43        tmp_tb = tstate->exc_traceback;
2019-07-12T23:05:43                         ^~~~~~~~~~~~~
2019-07-12T23:05:43                         curexc_traceback
2019-07-12T23:05:43   AdaptivePELE/atomset/RMSDCalculator.c:8616:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2019-07-12T23:05:43        tstate->exc_type = local_type;
2019-07-12T23:05:43                ^~~~~~~~
2019-07-12T23:05:43                curexc_type
2019-07-12T23:05:43   AdaptivePELE/atomset/RMSDCalculator.c:8617:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2019-07-12T23:05:43        tstate->exc_value = local_value;
2019-07-12T23:05:43                ^~~~~~~~~
2019-07-12T23:05:43                curexc_value
2019-07-12T23:05:43   AdaptivePELE/atomset/RMSDCalculator.c:8618:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2019-07-12T23:05:43        tstate->exc_traceback = local_tb;
2019-07-12T23:05:43                ^~~~~~~~~~~~~
2019-07-12T23:05:43                curexc_traceback
2019-07-12T23:05:43   error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1
2019-07-12T23:05:43   Building wheel for AdaptivePELE (setup.py): finished with status 'error'
2019-07-12T23:05:43   ERROR: Failed building wheel for AdaptivePELE
2019-07-12T23:05:43   Running setup.py clean for AdaptivePELE
2019-07-12T23:05:43   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-dy3ft51y/AdaptivePELE/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2019-07-12T23:05:45   Warning: 'classifiers' should be a list, got type 'tuple'
2019-07-12T23:05:45   running clean
2019-07-12T23:05:45   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2019-07-12T23:05:45   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2019-07-12T23:05:45   'build/bdist.linux-armv7l' does not exist -- can't clean it
2019-07-12T23:05:45   'build/scripts-3.7' does not exist -- can't clean it
2019-07-12T23:05:45   removing 'build'
2019-07-12T23:05:46 Failed to build AdaptivePELE
2019-07-12T23:05:46 Cleaning up...
2019-07-12T23:05:46   Removing source in /tmp/pip-wheel-dy3ft51y/AdaptivePELE
2019-07-12T23:05:46 Removed build tracker '/tmp/pip-req-tracker-fzi1sqgl'
2019-07-12T23:05:46 ERROR: Failed to build one or more wheels
2019-07-12T23:05:46 Exception information:
2019-07-12T23:05:46 Traceback (most recent call last):
2019-07-12T23:05:46   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-12T23:05:46     status = self.run(options, args)
2019-07-12T23:05:46   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run
2019-07-12T23:05:46     "Failed to build one or more wheels"
2019-07-12T23:05:46 pip._internal.exceptions.CommandError: Failed to build one or more wheels