2019-07-14T06:19:26 Created temporary directory: /tmp/pip-ephem-wheel-cache-82mvlugu
2019-07-14T06:19:26 Created temporary directory: /tmp/pip-req-tracker-iccqat3d
2019-07-14T06:19:26 Created requirements tracker '/tmp/pip-req-tracker-iccqat3d'
2019-07-14T06:19:26 Created temporary directory: /tmp/pip-wheel-6zgpnsy4
2019-07-14T06:19:26 Collecting biom-format==2.1.4
2019-07-14T06:19:26   1 location(s) to search for versions of biom-format:
2019-07-14T06:19:26   * https://pypi.org/simple/biom-format/
2019-07-14T06:19:26   Getting page https://pypi.org/simple/biom-format/
2019-07-14T06:19:26   Analyzing links from page https://pypi.org/simple/biom-format/
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6
2019-07-14T06:19:26     Skipping link https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/); it is not compatible with this Python
2019-07-14T06:19:26     Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7
2019-07-14T06:19:26     Skipping link https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/); it is not compatible with this Python
2019-07-14T06:19:26   Using version 2.1.4 (newest of versions: 2.1.4)
2019-07-14T06:19:26   Created temporary directory: /tmp/pip-unpack-gapvd31q
2019-07-14T06:19:26   Downloading https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (435kB)
2019-07-14T06:19:26   Downloading from URL https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/)
2019-07-14T06:19:27   Added biom-format==2.1.4 from https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 to build tracker '/tmp/pip-req-tracker-iccqat3d'
2019-07-14T06:19:27     Running setup.py (path:/tmp/pip-wheel-6zgpnsy4/biom-format/setup.py) egg_info for package biom-format
2019-07-14T06:19:27     Running command python setup.py egg_info
2019-07-14T06:19:29     running egg_info
2019-07-14T06:19:29     creating pip-egg-info/biom_format.egg-info
2019-07-14T06:19:29     writing pip-egg-info/biom_format.egg-info/PKG-INFO
2019-07-14T06:19:29     writing dependency_links to pip-egg-info/biom_format.egg-info/dependency_links.txt
2019-07-14T06:19:29     writing requirements to pip-egg-info/biom_format.egg-info/requires.txt
2019-07-14T06:19:29     writing top-level names to pip-egg-info/biom_format.egg-info/top_level.txt
2019-07-14T06:19:29     writing manifest file 'pip-egg-info/biom_format.egg-info/SOURCES.txt'
2019-07-14T06:19:29     reading manifest file 'pip-egg-info/biom_format.egg-info/SOURCES.txt'
2019-07-14T06:19:29     reading manifest template 'MANIFEST.in'
2019-07-14T06:19:29     no previously-included directories found matching 'docs/_build'
2019-07-14T06:19:29     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2019-07-14T06:19:29     warning: no previously-included files matching '*.pyo' found anywhere in distribution
2019-07-14T06:19:29     warning: no previously-included files matching '.git' found anywhere in distribution
2019-07-14T06:19:29     writing manifest file 'pip-egg-info/biom_format.egg-info/SOURCES.txt'
2019-07-14T06:19:29   Source in /tmp/pip-wheel-6zgpnsy4/biom-format has version 2.1.4, which satisfies requirement biom-format==2.1.4 from https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15
2019-07-14T06:19:29   Removed biom-format==2.1.4 from https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 from build tracker '/tmp/pip-req-tracker-iccqat3d'
2019-07-14T06:19:29 Building wheels for collected packages: biom-format
2019-07-14T06:19:29   Created temporary directory: /tmp/pip-wheel-umwq42dy
2019-07-14T06:19:29   Building wheel for biom-format (setup.py): started
2019-07-14T06:19:29   Destination directory: /tmp/pip-wheel-umwq42dy
2019-07-14T06:19:29   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-6zgpnsy4/biom-format/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-umwq42dy
2019-07-14T06:19:31   running bdist_wheel
2019-07-14T06:19:31   running build
2019-07-14T06:19:31   running build_py
2019-07-14T06:19:32   creating build
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   copying biom/parse.py -> build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   copying biom/__init__.py -> build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   copying biom/util.py -> build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   copying biom/exception.py -> build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   copying biom/err.py -> build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   copying biom/table.py -> build/lib.linux-armv7l-3.7/biom
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-3.7/biom/commands
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom/interfaces
2019-07-14T06:19:32   copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2019-07-14T06:19:32   copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2019-07-14T06:19:32   copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2019-07-14T06:19:32   copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom/interfaces/html
2019-07-14T06:19:32   copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html
2019-07-14T06:19:32   copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html
2019-07-14T06:19:32   copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html
2019-07-14T06:19:32   creating build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2019-07-14T06:19:32   running build_ext
2019-07-14T06:19:32   building 'biom._filter' extension
2019-07-14T06:19:32   creating build/temp.linux-armv7l-3.7
2019-07-14T06:19:32   creating build/temp.linux-armv7l-3.7/biom
2019-07-14T06:19:32   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-armv7l-3.7/biom/_filter.o
2019-07-14T06:19:33   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-14T06:19:33                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-14T06:19:33                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T06:19:33                    from biom/_filter.c:258:
2019-07-14T06:19:33   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-14T06:19:33    #warning "Using deprecated NumPy API, disable it with " \
2019-07-14T06:19:33     ^~~~~~~
2019-07-14T06:19:33   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2019-07-14T06:19:33                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T06:19:33                    from biom/_filter.c:258:
2019-07-14T06:19:33   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2019-07-14T06:19:33    _import_array(void)
2019-07-14T06:19:33    ^~~~~~~~~~~~~
2019-07-14T06:19:45   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/biom/_filter.o -o build/lib.linux-armv7l-3.7/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T06:19:45   building 'biom._transform' extension
2019-07-14T06:19:45   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-armv7l-3.7/biom/_transform.o
2019-07-14T06:19:45   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-14T06:19:45                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-14T06:19:45                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T06:19:45                    from biom/_transform.c:258:
2019-07-14T06:19:45   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-14T06:19:45    #warning "Using deprecated NumPy API, disable it with " \
2019-07-14T06:19:45     ^~~~~~~
2019-07-14T06:19:46   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2019-07-14T06:19:46                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T06:19:46                    from biom/_transform.c:258:
2019-07-14T06:19:46   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2019-07-14T06:19:46    _import_array(void)
2019-07-14T06:19:46    ^~~~~~~~~~~~~
2019-07-14T06:19:49   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/biom/_transform.o -o build/lib.linux-armv7l-3.7/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T06:19:49   building 'biom._subsample' extension
2019-07-14T06:19:49   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-armv7l-3.7/biom/_subsample.o
2019-07-14T06:19:49   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-14T06:19:49                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-14T06:19:49                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T06:19:49                    from biom/_subsample.c:258:
2019-07-14T06:19:49   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-14T06:19:49    #warning "Using deprecated NumPy API, disable it with " \
2019-07-14T06:19:49     ^~~~~~~
2019-07-14T06:19:50   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2019-07-14T06:19:50                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T06:19:50                    from biom/_subsample.c:258:
2019-07-14T06:19:50   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2019-07-14T06:19:50    _import_array(void)
2019-07-14T06:19:50    ^~~~~~~~~~~~~
2019-07-14T06:19:57   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/biom/_subsample.o -o build/lib.linux-armv7l-3.7/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T06:19:58   running build_scripts
2019-07-14T06:19:58   creating build/scripts-3.7
2019-07-14T06:19:58   copying scripts/biom -> build/scripts-3.7
2019-07-14T06:19:58   copying scripts/serve-biom -> build/scripts-3.7
2019-07-14T06:19:58   changing mode of build/scripts-3.7/serve-biom from 644 to 755
2019-07-14T06:19:58   installing to build/bdist.linux-armv7l/wheel
2019-07-14T06:19:58   running install
2019-07-14T06:19:58   running install_lib
2019-07-14T06:19:58   creating build/bdist.linux-armv7l
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/commands/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/commands
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/_filter.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom/interfaces
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom/interfaces/html
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/util.py -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/_transform.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/err.py -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   copying build/lib.linux-armv7l-3.7/biom/table.py -> build/bdist.linux-armv7l/wheel/biom
2019-07-14T06:19:58   running install_egg_info
2019-07-14T06:19:58   running egg_info
2019-07-14T06:19:58   writing biom_format.egg-info/PKG-INFO
2019-07-14T06:19:58   writing dependency_links to biom_format.egg-info/dependency_links.txt
2019-07-14T06:19:58   writing requirements to biom_format.egg-info/requires.txt
2019-07-14T06:19:58   writing top-level names to biom_format.egg-info/top_level.txt
2019-07-14T06:19:58   reading manifest file 'biom_format.egg-info/SOURCES.txt'
2019-07-14T06:19:58   reading manifest template 'MANIFEST.in'
2019-07-14T06:19:58   no previously-included directories found matching 'docs/_build'
2019-07-14T06:19:58   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2019-07-14T06:19:58   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2019-07-14T06:19:58   warning: no previously-included files matching '.git' found anywhere in distribution
2019-07-14T06:19:58   writing manifest file 'biom_format.egg-info/SOURCES.txt'
2019-07-14T06:19:58   Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.4-py3.7.egg-info
2019-07-14T06:19:58   running install_scripts
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts
2019-07-14T06:19:58   copying build/scripts-3.7/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts
2019-07-14T06:19:58   copying build/scripts-3.7/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts
2019-07-14T06:19:58   changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts/serve-biom to 755
2019-07-14T06:19:58   changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts/biom to 755
2019-07-14T06:19:58   adding license file "COPYING.txt" (matched pattern "COPYING*")
2019-07-14T06:19:58   creating build/bdist.linux-armv7l/wheel/biom_format-2.1.4.dist-info/WHEEL
2019-07-14T06:19:58   creating '/tmp/pip-wheel-umwq42dy/biom_format-2.1.4-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-14T06:19:58   adding 'biom/__init__.py'
2019-07-14T06:19:58   adding 'biom/_filter.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T06:19:58   adding 'biom/_subsample.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T06:19:59   adding 'biom/_transform.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T06:19:59   adding 'biom/err.py'
2019-07-14T06:19:59   adding 'biom/exception.py'
2019-07-14T06:19:59   adding 'biom/parse.py'
2019-07-14T06:19:59   adding 'biom/table.py'
2019-07-14T06:19:59   adding 'biom/util.py'
2019-07-14T06:19:59   adding 'biom/commands/__init__.py'
2019-07-14T06:19:59   adding 'biom/commands/installation_informer.py'
2019-07-14T06:19:59   adding 'biom/commands/metadata_adder.py'
2019-07-14T06:19:59   adding 'biom/commands/table_converter.py'
2019-07-14T06:19:59   adding 'biom/commands/table_normalizer.py'
2019-07-14T06:19:59   adding 'biom/commands/table_subsetter.py'
2019-07-14T06:19:59   adding 'biom/commands/table_summarizer.py'
2019-07-14T06:19:59   adding 'biom/commands/table_validator.py'
2019-07-14T06:19:59   adding 'biom/interfaces/__init__.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/__init__.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/input_handler.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/output_handler.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/__init__.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/add_metadata.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/convert.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/normalize_table.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/show_install_info.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/summarize_table.py'
2019-07-14T06:19:59   adding 'biom/interfaces/html/config/validate_table.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/__init__.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/input_handler.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/output_handler.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/__init__.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/add_metadata.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/convert.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/normalize_table.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/show_install_info.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/subset_table.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/summarize_table.py'
2019-07-14T06:19:59   adding 'biom/interfaces/optparse/config/validate_table.py'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.data/scripts/biom'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.data/scripts/serve-biom'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.dist-info/COPYING.txt'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.dist-info/METADATA'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.dist-info/WHEEL'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.dist-info/top_level.txt'
2019-07-14T06:19:59   adding 'biom_format-2.1.4.dist-info/RECORD'
2019-07-14T06:19:59   removing build/bdist.linux-armv7l/wheel
2019-07-14T06:19:59   Building wheel for biom-format (setup.py): finished with status 'done'
2019-07-14T06:19:59   Stored in directory: /tmp/tmpo58x6u64
2019-07-14T06:19:59 Successfully built biom-format
2019-07-14T06:19:59 Cleaning up...
2019-07-14T06:19:59   Removing source in /tmp/pip-wheel-6zgpnsy4/biom-format
2019-07-14T06:19:59 Removed build tracker '/tmp/pip-req-tracker-iccqat3d'