2019-07-14T07:16:20 Created temporary directory: /tmp/pip-ephem-wheel-cache-t03ceqj3
2019-07-14T07:16:20 Created temporary directory: /tmp/pip-req-tracker-0048g0uw
2019-07-14T07:16:20 Created requirements tracker '/tmp/pip-req-tracker-0048g0uw'
2019-07-14T07:16:20 Created temporary directory: /tmp/pip-wheel-fy0mvi7_
2019-07-14T07:16:20 Collecting moira==v1.0.1
2019-07-14T07:16:20   1 location(s) to search for versions of moira:
2019-07-14T07:16:20   * https://pypi.org/simple/moira/
2019-07-14T07:16:20   Getting page https://pypi.org/simple/moira/
2019-07-14T07:16:20   Analyzing links from page https://pypi.org/simple/moira/
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/50/c8/214268f5af1be0fadd0b993d96f3b3f5def49c1c9a693a695ab688bcb45c/moira-v1.0.0.tar.gz#sha256=cd1e465608b5d346f1a8b204fd9bb8c1634bf3db9ad3adc89ddafe3c569feb37 (from https://pypi.org/simple/moira/), version: v1.0.0
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8 (from https://pypi.org/simple/moira/), version: v1.0.1
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/92/f5/5af7667b9d4930d27b24597643d88b8c76ce715351ee59be3d1d128cf0ed/moira-v1.0.2b.tar.gz#sha256=c25307bfd838eea95d74f16d4a270be8c63b477b72957123a460b7b79088f34a (from https://pypi.org/simple/moira/), version: v1.0.2b
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/fd/42/e43dd8004e8330c625482ac2563222b7e780dd9c951543b7e0d9e20d5482/moira-v1.0.2.tar.gz#sha256=210485455aba232fc7625974ce026ae00e864c4a746739adf24701219f36730d (from https://pypi.org/simple/moira/), version: v1.0.2
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/45/82/2488293a6de58d96101ed49993a83cef82ed27b8b94683f0b48b3053d03c/moira-v1.1.0.tar.gz#sha256=284d89790de1de877ef78ab6a3604d57cf3a6c16a8132354986dfa81c38184ca (from https://pypi.org/simple/moira/), version: v1.1.0
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/7e/70/3f9ca73321fd8e7403a4673d2f66ce4a31cdc5007b6cf261a2767218dd8c/moira-v1.2.0.tar.gz#sha256=a47396bc7ea1fcda373613a773b8aeacb8f0db55d87a4302ead78f72755fb73d (from https://pypi.org/simple/moira/), version: v1.2.0
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/51/3b/500c09bd64d7dcf6e50516e5f91e9b121a4bd0dfbce255c066f77bf7d5de/moira-v1.2.1.tar.gz#sha256=404d6557cfbcaca85b5e6c8d0c2df1094d4bf7f69e9976c5bfb7625d1ad518d1 (from https://pypi.org/simple/moira/), version: v1.2.1
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/60/c5/d34cb2fdc1304e5bcd74488164543d51788f9d43a4fb6db89c4dd7397ab5/moira-v1.3.0.tar.gz#sha256=77f68974a17d928449055696632ced9ac56530bcb5abaddd4df88e445d6f497f (from https://pypi.org/simple/moira/), version: v1.3.0
2019-07-14T07:16:20     Found link https://files.pythonhosted.org/packages/2d/b0/6e752f6fd0423ed624387c94d5fcabaa6eef234b3cbd12d0db607af477bf/moira-v1.3.2.tar.gz#sha256=6b00b7d0e0e37724fc23ed03bf1ec3d5d2fcf7ec51a769967f729d68b014e00c (from https://pypi.org/simple/moira/), version: v1.3.2
2019-07-14T07:16:20   Using version 1.0.1 (newest of versions: 1.0.1)
2019-07-14T07:16:20   Created temporary directory: /tmp/pip-unpack-08142vy9
2019-07-14T07:16:21   Downloading https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz (44kB)
2019-07-14T07:16:21   Downloading from URL https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8 (from https://pypi.org/simple/moira/)
2019-07-14T07:16:21   Added moira==v1.0.1 from https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8 to build tracker '/tmp/pip-req-tracker-0048g0uw'
2019-07-14T07:16:21     Running setup.py (path:/tmp/pip-wheel-fy0mvi7_/moira/setup.py) egg_info for package moira
2019-07-14T07:16:21     Running command python setup.py egg_info
2019-07-14T07:16:22     running egg_info
2019-07-14T07:16:22     creating pip-egg-info/moira.egg-info
2019-07-14T07:16:22     writing pip-egg-info/moira.egg-info/PKG-INFO
2019-07-14T07:16:22     writing dependency_links to pip-egg-info/moira.egg-info/dependency_links.txt
2019-07-14T07:16:22     writing top-level names to pip-egg-info/moira.egg-info/top_level.txt
2019-07-14T07:16:22     writing manifest file 'pip-egg-info/moira.egg-info/SOURCES.txt'
2019-07-14T07:16:23     reading manifest file 'pip-egg-info/moira.egg-info/SOURCES.txt'
2019-07-14T07:16:23     writing manifest file 'pip-egg-info/moira.egg-info/SOURCES.txt'
2019-07-14T07:16:23     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing 'v1.0.1' to '1.0.1'
2019-07-14T07:16:23       normalized_version,
2019-07-14T07:16:23   Source in /tmp/pip-wheel-fy0mvi7_/moira has version 1.0.1, which satisfies requirement moira==v1.0.1 from https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8
2019-07-14T07:16:23   Removed moira==v1.0.1 from https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8 from build tracker '/tmp/pip-req-tracker-0048g0uw'
2019-07-14T07:16:23 Building wheels for collected packages: moira
2019-07-14T07:16:23   Created temporary directory: /tmp/pip-wheel-anslvcct
2019-07-14T07:16:23   Building wheel for moira (setup.py): started
2019-07-14T07:16:23   Destination directory: /tmp/pip-wheel-anslvcct
2019-07-14T07:16:23   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-fy0mvi7_/moira/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-anslvcct
2019-07-14T07:16:24   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing 'v1.0.1' to '1.0.1'
2019-07-14T07:16:24     normalized_version,
2019-07-14T07:16:24   running bdist_wheel
2019-07-14T07:16:24   running build
2019-07-14T07:16:24   running build_py
2019-07-14T07:16:24   creating build
2019-07-14T07:16:24   creating build/lib.linux-armv7l-3.7
2019-07-14T07:16:24   creating build/lib.linux-armv7l-3.7/moira
2019-07-14T07:16:24   copying moira/__init__.py -> build/lib.linux-armv7l-3.7/moira
2019-07-14T07:16:24   copying moira/moira.py -> build/lib.linux-armv7l-3.7/moira
2019-07-14T07:16:24   running build_ext
2019-07-14T07:16:25   building 'bernoulli' extension
2019-07-14T07:16:25   creating build/temp.linux-armv7l-3.7
2019-07-14T07:16:25   creating build/temp.linux-armv7l-3.7/moira
2019-07-14T07:16:25   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c moira/bernoullimodule.c -o build/temp.linux-armv7l-3.7/moira/bernoullimodule.o
2019-07-14T07:16:25   moira/bernoullimodule.c: In function ‘calculate_errors_PB’:
2019-07-14T07:16:25   moira/bernoullimodule.c:89:37: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2019-07-14T07:16:25                contig_quals [i] = (int)PyInt_AsLong(intObj); //Since python integers are actually implemented as C long integers.
2019-07-14T07:16:25                                        ^~~~~~~~~~~~
2019-07-14T07:16:25                                        PyLong_AsLong
2019-07-14T07:16:25   moira/bernoullimodule.c: In function ‘initbernoulli2’:
2019-07-14T07:16:25   moira/bernoullimodule.c:106:9: warning: implicit declaration of function ‘Py_InitModule’; did you mean ‘Py_Initialize’? [-Wimplicit-function-declaration]
2019-07-14T07:16:25     (void) Py_InitModule("bernoulli2", module_methods);
2019-07-14T07:16:25            ^~~~~~~~~~~~~
2019-07-14T07:16:25            Py_Initialize
2019-07-14T07:16:25   moira/bernoullimodule.c: In function ‘test’:
2019-07-14T07:16:25   moira/bernoullimodule.c:194:6: warning: unused variable ‘j’ [-Wunused-variable]
2019-07-14T07:16:25     int j;
2019-07-14T07:16:25         ^
2019-07-14T07:16:25   moira/bernoullimodule.c: In function ‘initbernoulli2’:
2019-07-14T07:16:25   moira/bernoullimodule.c:107:1: warning: control reaches end of non-void function [-Wreturn-type]
2019-07-14T07:16:25    }
2019-07-14T07:16:25    ^
2019-07-14T07:16:25   At top level:
2019-07-14T07:16:25   moira/bernoullimodule.c:55:13: warning: ‘module_docstring’ defined but not used [-Wunused-variable]
2019-07-14T07:16:25    static char module_docstring[] = "This module provides an interface for calculating the expected errors of a given sequence using a sum of Bernoulli random variables.";
2019-07-14T07:16:25                ^~~~~~~~~~~~~~~~
2019-07-14T07:16:25   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/moira/bernoullimodule.o -o build/lib.linux-armv7l-3.7/bernoulli.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T07:16:26   building 'nw_align' extension
2019-07-14T07:16:26   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c moira/nw_align.c -o build/temp.linux-armv7l-3.7/moira/nw_align.o
2019-07-14T07:16:32   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/moira/nw_align.o -o build/lib.linux-armv7l-3.7/nw_align.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T07:16:32   running build_scripts
2019-07-14T07:16:32   creating build/scripts-3.7
2019-07-14T07:16:32   copying and adjusting moira/moira.py -> build/scripts-3.7
2019-07-14T07:16:32   changing mode of build/scripts-3.7/moira.py from 644 to 755
2019-07-14T07:16:32   installing to build/bdist.linux-armv7l/wheel
2019-07-14T07:16:32   running install
2019-07-14T07:16:32   running install_lib
2019-07-14T07:16:32   creating build/bdist.linux-armv7l
2019-07-14T07:16:32   creating build/bdist.linux-armv7l/wheel
2019-07-14T07:16:32   copying build/lib.linux-armv7l-3.7/nw_align.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2019-07-14T07:16:32   creating build/bdist.linux-armv7l/wheel/moira
2019-07-14T07:16:32   copying build/lib.linux-armv7l-3.7/moira/__init__.py -> build/bdist.linux-armv7l/wheel/moira
2019-07-14T07:16:32   copying build/lib.linux-armv7l-3.7/moira/moira.py -> build/bdist.linux-armv7l/wheel/moira
2019-07-14T07:16:32   copying build/lib.linux-armv7l-3.7/bernoulli.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2019-07-14T07:16:32   running install_egg_info
2019-07-14T07:16:32   running egg_info
2019-07-14T07:16:32   creating moira.egg-info
2019-07-14T07:16:32   writing moira.egg-info/PKG-INFO
2019-07-14T07:16:32   writing dependency_links to moira.egg-info/dependency_links.txt
2019-07-14T07:16:33   writing top-level names to moira.egg-info/top_level.txt
2019-07-14T07:16:33   writing manifest file 'moira.egg-info/SOURCES.txt'
2019-07-14T07:16:33   reading manifest file 'moira.egg-info/SOURCES.txt'
2019-07-14T07:16:33   writing manifest file 'moira.egg-info/SOURCES.txt'
2019-07-14T07:16:33   Copying moira.egg-info to build/bdist.linux-armv7l/wheel/moira-1.0.1-py3.7.egg-info
2019-07-14T07:16:33   running install_scripts
2019-07-14T07:16:33   creating build/bdist.linux-armv7l/wheel/moira-1.0.1.data
2019-07-14T07:16:33   creating build/bdist.linux-armv7l/wheel/moira-1.0.1.data/scripts
2019-07-14T07:16:33   copying build/scripts-3.7/moira.py -> build/bdist.linux-armv7l/wheel/moira-1.0.1.data/scripts
2019-07-14T07:16:33   changing mode of build/bdist.linux-armv7l/wheel/moira-1.0.1.data/scripts/moira.py to 755
2019-07-14T07:16:33   creating build/bdist.linux-armv7l/wheel/moira-1.0.1.dist-info/WHEEL
2019-07-14T07:16:33   creating '/tmp/pip-wheel-anslvcct/moira-1.0.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-14T07:16:33   adding 'bernoulli.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T07:16:33   adding 'nw_align.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T07:16:33   adding 'moira/__init__.py'
2019-07-14T07:16:33   adding 'moira/moira.py'
2019-07-14T07:16:33   adding 'moira-1.0.1.data/scripts/moira.py'
2019-07-14T07:16:33   adding 'moira-1.0.1.dist-info/METADATA'
2019-07-14T07:16:33   adding 'moira-1.0.1.dist-info/WHEEL'
2019-07-14T07:16:33   adding 'moira-1.0.1.dist-info/top_level.txt'
2019-07-14T07:16:33   adding 'moira-1.0.1.dist-info/RECORD'
2019-07-14T07:16:33   removing build/bdist.linux-armv7l/wheel
2019-07-14T07:16:33   Building wheel for moira (setup.py): finished with status 'done'
2019-07-14T07:16:33   Stored in directory: /tmp/tmp3ejlu2gf
2019-07-14T07:16:33 Successfully built moira
2019-07-14T07:16:33 Cleaning up...
2019-07-14T07:16:33   Removing source in /tmp/pip-wheel-fy0mvi7_/moira
2019-07-14T07:16:33 Removed build tracker '/tmp/pip-req-tracker-0048g0uw'