2019-07-14T07:57:54 Created temporary directory: /tmp/pip-ephem-wheel-cache-ei5src2f
2019-07-14T07:57:54 Created temporary directory: /tmp/pip-req-tracker-ces90r04
2019-07-14T07:57:54 Created requirements tracker '/tmp/pip-req-tracker-ces90r04'
2019-07-14T07:57:54 Created temporary directory: /tmp/pip-wheel-axatn5ys
2019-07-14T07:57:54 Collecting coral==0.1.0
2019-07-14T07:57:54   1 location(s) to search for versions of coral:
2019-07-14T07:57:54   * https://pypi.org/simple/coral/
2019-07-14T07:57:54   Getting page https://pypi.org/simple/coral/
2019-07-14T07:57:54   Analyzing links from page https://pypi.org/simple/coral/
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 (from https://pypi.org/simple/coral/), version: 0.1.0
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/5e/32/a978f786759decac49a3c01bc90b0ee0ca3d7057f144a8c34bcf8a04fcfa/coral-0.2.1.tar.gz#sha256=e276992eb9b27b444f610021fd56b2f2ee07c2a0f9adfcefea9924f470756e93 (from https://pypi.org/simple/coral/), version: 0.2.1
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/2e/93/013c15b7a8f45cf10db8407bcd093a36509c5d8e5401d549b3d9dd56188e/coral-0.3.0.tar.gz#sha256=defd18ef9b8edd3f4bc384a12a871a8678ab33ca26f822246730bd2fefeb5e58 (from https://pypi.org/simple/coral/), version: 0.3.0
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/0d/f0/fae5d6f962af4feca22ead719f30b8bffe9c72b39fc31c7ed784d367a4e5/coral-0.3.1.tar.gz#sha256=c2333204fcb0e538f71dc96e0ea2c4558a8f421e4b5c236c1757d8a9c263d0d6 (from https://pypi.org/simple/coral/), version: 0.3.1
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/93/9c/b1b04b1b899d4bbfa1ec0253d64fa314eb23d23a34a0e07cee70b9f2ae35/coral-0.3.2.tar.gz#sha256=4778b352cb88a45b13e0793305e3c9909538238be5dad487fa3a9aa3bd9c417a (from https://pypi.org/simple/coral/), version: 0.3.2
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/dd/eb/cab2e724fe9df60cea55d5df16a12999cb302e628f4069623cf4b3022b96/coral-0.3.3.tar.gz#sha256=5ba04b738b3b66c4e352e9e8a952c0f18c5199957c41babb891417f065a2e3a6 (from https://pypi.org/simple/coral/), version: 0.3.3
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/e0/98/e39408ac64c87765767caa582aff07b66d2f31329cb1647712c44fa99f1c/coral-0.3.4.tar.gz#sha256=d5b9123939c2a90b7bc195a58981a7a9c174d18325ac659458ecdba0602ac56c (from https://pypi.org/simple/coral/), version: 0.3.4
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/4c/3e/c067cd40b343c9f28f73a9601295d7ccca025ce4013d881d955a5ce7dfdc/coral-0.4.0.tar.gz#sha256=bc21e2ec04ed2497ab4e92877b900d9fe40352d56fd014928b7ae25946c46d5d (from https://pypi.org/simple/coral/), version: 0.4.0
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/81/3d/26bb52490da33b7045eafb6b130ae68bc05b65fbc2d17e2ea57f57f98291/coral-0.4.1.tar.gz#sha256=41ed525ee1a82c3624bdd0fc44d08aab87e3ab145505f91852c20e667a61b354 (from https://pypi.org/simple/coral/), version: 0.4.1
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/d0/36/89f1f3a35c9dc240f7ec72b157c7937a50fd4a884ff81470ecfa21f7d3f6/coral-0.4.2.tar.gz#sha256=14a5cafb8f177377df1536104bf895dc49111c76db60c2797170c990ea19fdb7 (from https://pypi.org/simple/coral/), version: 0.4.2
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/55/bb/dc671afad82512788ef48ac860bd0cacff56a7f168fe2dfa0135af8a14de/coral-0.4.3.tar.gz#sha256=8d6a7abb65ad671e5aeabcc9f2594a78baf0aa1007e9e1ece96894255eb1362e (from https://pypi.org/simple/coral/), version: 0.4.3
2019-07-14T07:57:54     Found link https://files.pythonhosted.org/packages/ef/3a/f46fe8052c0de4303554be16f07e9dc12c3fec80ed7672ec0a27e87ae04f/coral-0.5.0.tar.gz#sha256=f957e10217d53650219372f8def5a415064e66e1ad3a795a7489bdbea7fac38d (from https://pypi.org/simple/coral/), version: 0.5.0
2019-07-14T07:57:54   Using version 0.1.0 (newest of versions: 0.1.0)
2019-07-14T07:57:54   Created temporary directory: /tmp/pip-unpack-cy_k5yah
2019-07-14T07:57:54   Downloading https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz (121kB)
2019-07-14T07:57:54   Downloading from URL https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 (from https://pypi.org/simple/coral/)
2019-07-14T07:57:54   Added coral==0.1.0 from https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 to build tracker '/tmp/pip-req-tracker-ces90r04'
2019-07-14T07:57:54     Running setup.py (path:/tmp/pip-wheel-axatn5ys/coral/setup.py) egg_info for package coral
2019-07-14T07:57:54     Running command python setup.py egg_info
2019-07-14T07:57:59     running egg_info
2019-07-14T07:57:59     creating pip-egg-info/coral.egg-info
2019-07-14T07:57:59     writing pip-egg-info/coral.egg-info/PKG-INFO
2019-07-14T07:57:59     writing dependency_links to pip-egg-info/coral.egg-info/dependency_links.txt
2019-07-14T07:57:59     writing requirements to pip-egg-info/coral.egg-info/requires.txt
2019-07-14T07:57:59     writing top-level names to pip-egg-info/coral.egg-info/top_level.txt
2019-07-14T07:57:59     writing manifest file 'pip-egg-info/coral.egg-info/SOURCES.txt'
2019-07-14T07:58:00     reading manifest file 'pip-egg-info/coral.egg-info/SOURCES.txt'
2019-07-14T07:58:00     reading manifest template 'MANIFEST.in'
2019-07-14T07:58:00     writing manifest file 'pip-egg-info/coral.egg-info/SOURCES.txt'
2019-07-14T07:58:00   Source in /tmp/pip-wheel-axatn5ys/coral has version 0.1.0, which satisfies requirement coral==0.1.0 from https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42
2019-07-14T07:58:00   Removed coral==0.1.0 from https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 from build tracker '/tmp/pip-req-tracker-ces90r04'
2019-07-14T07:58:00 Building wheels for collected packages: coral
2019-07-14T07:58:00   Created temporary directory: /tmp/pip-wheel-o5fb_768
2019-07-14T07:58:00   Building wheel for coral (setup.py): started
2019-07-14T07:58:00   Destination directory: /tmp/pip-wheel-o5fb_768
2019-07-14T07:58:00   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-axatn5ys/coral/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-o5fb_768
2019-07-14T07:58:02   running bdist_wheel
2019-07-14T07:58:02   running build
2019-07-14T07:58:02   running build_py
2019-07-14T07:58:02   creating build
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral
2019-07-14T07:58:02   copying coral/__init__.py -> build/lib.linux-armv7l-3.7/coral
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/analysis
2019-07-14T07:58:02   copying coral/analysis/utils.py -> build/lib.linux-armv7l-3.7/coral/analysis
2019-07-14T07:58:02   copying coral/analysis/__init__.py -> build/lib.linux-armv7l-3.7/coral/analysis
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/analysis/_sequence
2019-07-14T07:58:02   copying coral/analysis/_sequence/repeats.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequence
2019-07-14T07:58:02   copying coral/analysis/_sequence/melting_temp.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequence
2019-07-14T07:58:02   copying coral/analysis/_sequence/tm_params.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequence
2019-07-14T07:58:02   copying coral/analysis/_sequence/__init__.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequence
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:02   copying coral/analysis/_sequencing/needle.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:02   copying coral/analysis/_sequencing/__init__.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:02   copying coral/analysis/_sequencing/align.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:02   copying coral/analysis/_sequencing/sanger.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/analysis/_structure
2019-07-14T07:58:02   copying coral/analysis/_structure/structure_windows.py -> build/lib.linux-armv7l-3.7/coral/analysis/_structure
2019-07-14T07:58:02   copying coral/analysis/_structure/vienna.py -> build/lib.linux-armv7l-3.7/coral/analysis/_structure
2019-07-14T07:58:02   copying coral/analysis/_structure/dimers.py -> build/lib.linux-armv7l-3.7/coral/analysis/_structure
2019-07-14T07:58:02   copying coral/analysis/_structure/__init__.py -> build/lib.linux-armv7l-3.7/coral/analysis/_structure
2019-07-14T07:58:02   copying coral/analysis/_structure/nupack.py -> build/lib.linux-armv7l-3.7/coral/analysis/_structure
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/constants
2019-07-14T07:58:02   copying coral/constants/genbank.py -> build/lib.linux-armv7l-3.7/coral/constants
2019-07-14T07:58:02   copying coral/constants/restriction_sites.py -> build/lib.linux-armv7l-3.7/coral/constants
2019-07-14T07:58:02   copying coral/constants/molecular_bio.py -> build/lib.linux-armv7l-3.7/coral/constants
2019-07-14T07:58:02   copying coral/constants/__init__.py -> build/lib.linux-armv7l-3.7/coral/constants
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/database
2019-07-14T07:58:02   copying coral/database/_entrez.py -> build/lib.linux-armv7l-3.7/coral/database
2019-07-14T07:58:02   copying coral/database/_yeast.py -> build/lib.linux-armv7l-3.7/coral/database
2019-07-14T07:58:02   copying coral/database/_rebase.py -> build/lib.linux-armv7l-3.7/coral/database
2019-07-14T07:58:02   copying coral/database/__init__.py -> build/lib.linux-armv7l-3.7/coral/database
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/design
2019-07-14T07:58:02   copying coral/design/_gibson.py -> build/lib.linux-armv7l-3.7/coral/design
2019-07-14T07:58:02   copying coral/design/_primers.py -> build/lib.linux-armv7l-3.7/coral/design
2019-07-14T07:58:02   copying coral/design/__init__.py -> build/lib.linux-armv7l-3.7/coral/design
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/design/_oligo_synthesis
2019-07-14T07:58:02   copying coral/design/_oligo_synthesis/oligo_assembly.py -> build/lib.linux-armv7l-3.7/coral/design/_oligo_synthesis
2019-07-14T07:58:02   copying coral/design/_oligo_synthesis/__init__.py -> build/lib.linux-armv7l-3.7/coral/design/_oligo_synthesis
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/design/_sequence_generation
2019-07-14T07:58:02   copying coral/design/_sequence_generation/__init__.py -> build/lib.linux-armv7l-3.7/coral/design/_sequence_generation
2019-07-14T07:58:02   copying coral/design/_sequence_generation/random_sequences.py -> build/lib.linux-armv7l-3.7/coral/design/_sequence_generation
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/seqio
2019-07-14T07:58:02   copying coral/seqio/_dna.py -> build/lib.linux-armv7l-3.7/coral/seqio
2019-07-14T07:58:02   copying coral/seqio/__init__.py -> build/lib.linux-armv7l-3.7/coral/seqio
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/_oligo_assembly.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/_gibson.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/_resect.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/_restriction.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/utils.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/_pcr.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/__init__.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   copying coral/reaction/_central_dogma.py -> build/lib.linux-armv7l-3.7/coral/reaction
2019-07-14T07:58:02   creating build/lib.linux-armv7l-3.7/coral/sequence
2019-07-14T07:58:02   copying coral/sequence/_rna.py -> build/lib.linux-armv7l-3.7/coral/sequence
2019-07-14T07:58:02   copying coral/sequence/_dna.py -> build/lib.linux-armv7l-3.7/coral/sequence
2019-07-14T07:58:02   copying coral/sequence/_peptide.py -> build/lib.linux-armv7l-3.7/coral/sequence
2019-07-14T07:58:02   copying coral/sequence/__init__.py -> build/lib.linux-armv7l-3.7/coral/sequence
2019-07-14T07:58:02   copying coral/sequence/_sequence.py -> build/lib.linux-armv7l-3.7/coral/sequence
2019-07-14T07:58:02   running egg_info
2019-07-14T07:58:02   writing coral.egg-info/PKG-INFO
2019-07-14T07:58:02   writing dependency_links to coral.egg-info/dependency_links.txt
2019-07-14T07:58:02   writing requirements to coral.egg-info/requires.txt
2019-07-14T07:58:02   writing top-level names to coral.egg-info/top_level.txt
2019-07-14T07:58:02   reading manifest file 'coral.egg-info/SOURCES.txt'
2019-07-14T07:58:02   reading manifest template 'MANIFEST.in'
2019-07-14T07:58:02   writing manifest file 'coral.egg-info/SOURCES.txt'
2019-07-14T07:58:03   copying coral/analysis/_sequencing/calign.c -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:03   creating build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data
2019-07-14T07:58:03   copying coral/analysis/_sequencing/data/BLOSUM62 -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data
2019-07-14T07:58:03   copying coral/analysis/_sequencing/data/DNA -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data
2019-07-14T07:58:03   copying coral/analysis/_sequencing/data/DNA_simple -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data
2019-07-14T07:58:03   copying coral/analysis/_sequencing/data/__init__.py -> build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data
2019-07-14T07:58:03   running build_ext
2019-07-14T07:58:03   building 'coral.analysis._sequencing.calign' extension
2019-07-14T07:58:03   creating build/temp.linux-armv7l-3.7
2019-07-14T07:58:03   creating build/temp.linux-armv7l-3.7/coral
2019-07-14T07:58:03   creating build/temp.linux-armv7l-3.7/coral/analysis
2019-07-14T07:58:03   creating build/temp.linux-armv7l-3.7/coral/analysis/_sequencing
2019-07-14T07:58:03   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c coral/analysis/_sequencing/calign.c -o build/temp.linux-armv7l-3.7/coral/analysis/_sequencing/calign.o
2019-07-14T07:58:03   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-14T07:58:03                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-14T07:58:03                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T07:58:03                    from coral/analysis/_sequencing/calign.c:314:
2019-07-14T07:58:03   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-14T07:58:03    #warning "Using deprecated NumPy API, disable it with " \
2019-07-14T07:58:03     ^~~~~~~
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c: In function ‘__pyx_pf_5coral_8analysis_11_sequencing_6calign_2aligner’:
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4369:16: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration]
2019-07-14T07:58:04      __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-07-14T07:58:04                   ^~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T07:58:04                   PyBytes_FromStringAndSize
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4369:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-07-14T07:58:04      __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-07-14T07:58:04                 ^
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4378:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-07-14T07:58:04      __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen);
2019-07-14T07:58:04                 ^
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4387:21: warning: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration]
2019-07-14T07:58:04      __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj);
2019-07-14T07:58:04                        ^~~~~~~~~~~~~~~~~~
2019-07-14T07:58:04                        PyBytes_AS_STRING
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4387:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-07-14T07:58:04      __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj);
2019-07-14T07:58:04                      ^
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4396:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2019-07-14T07:58:04      __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai);
2019-07-14T07:58:04                      ^
2019-07-14T07:58:04   coral/analysis/_sequencing/calign.c:4651:3: warning: implicit declaration of function ‘_PyString_Resize’; did you mean ‘_PyTuple_Resize’? [-Wimplicit-function-declaration]
2019-07-14T07:58:04      _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter);
2019-07-14T07:58:04      ^~~~~~~~~~~~~~~~
2019-07-14T07:58:04      _PyTuple_Resize
2019-07-14T07:58:05   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2019-07-14T07:58:05                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T07:58:05                    from coral/analysis/_sequencing/calign.c:314:
2019-07-14T07:58:05   At top level:
2019-07-14T07:58:05   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2019-07-14T07:58:05    _import_array(void)
2019-07-14T07:58:05    ^~~~~~~~~~~~~
2019-07-14T07:58:11   coral/analysis/_sequencing/calign.c: In function ‘__pyx_pf_5coral_8analysis_11_sequencing_6calign_2aligner.isra.10’:
2019-07-14T07:58:11   coral/analysis/_sequencing/calign.c:4413:16: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2019-07-14T07:58:11        __pyx_t_19 += __pyx_pybuffernd_pointer.diminfo[1].shape;
2019-07-14T07:58:11        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T07:58:11   coral/analysis/_sequencing/calign.c:4409:16: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2019-07-14T07:58:11        __pyx_t_20 += __pyx_pybuffernd_pointer.diminfo[0].shape;
2019-07-14T07:58:11        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T07:58:11   coral/analysis/_sequencing/calign.c:4098:3: warning: ‘__pyx_v_imethod’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2019-07-14T07:58:11      switch (__pyx_v_imethod) {
2019-07-14T07:58:11      ^~~~~~
2019-07-14T07:58:19   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/coral/analysis/_sequencing/calign.o -o build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/calign.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T07:58:20   installing to build/bdist.linux-armv7l/wheel
2019-07-14T07:58:20   running install
2019-07-14T07:58:20   running install_lib
2019-07-14T07:58:20   creating build/bdist.linux-armv7l
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/constants
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/constants/genbank.py -> build/bdist.linux-armv7l/wheel/coral/constants
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/constants/restriction_sites.py -> build/bdist.linux-armv7l/wheel/coral/constants
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/constants/molecular_bio.py -> build/bdist.linux-armv7l/wheel/coral/constants
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/constants/__init__.py -> build/bdist.linux-armv7l/wheel/coral/constants
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/analysis
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/utils.py -> build/bdist.linux-armv7l/wheel/coral/analysis
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/needle.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/calign.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/align.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/sanger.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/calign.c -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data/DNA_simple -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data/BLOSUM62 -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequencing/data/DNA -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/analysis/_structure
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_structure/structure_windows.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_structure/vienna.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_structure/dimers.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_structure/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_structure/nupack.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequence/repeats.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequence/melting_temp.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequence/tm_params.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/analysis/_sequence/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/seqio
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/seqio/_dna.py -> build/bdist.linux-armv7l/wheel/coral/seqio
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/seqio/__init__.py -> build/bdist.linux-armv7l/wheel/coral/seqio
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/database
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/database/_entrez.py -> build/bdist.linux-armv7l/wheel/coral/database
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/database/_yeast.py -> build/bdist.linux-armv7l/wheel/coral/database
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/database/_rebase.py -> build/bdist.linux-armv7l/wheel/coral/database
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/database/__init__.py -> build/bdist.linux-armv7l/wheel/coral/database
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/_oligo_assembly.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/_gibson.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/_resect.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/_restriction.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/utils.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/_pcr.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/__init__.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/reaction/_central_dogma.py -> build/bdist.linux-armv7l/wheel/coral/reaction
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/__init__.py -> build/bdist.linux-armv7l/wheel/coral
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/sequence/_rna.py -> build/bdist.linux-armv7l/wheel/coral/sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/sequence/_dna.py -> build/bdist.linux-armv7l/wheel/coral/sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/sequence/_peptide.py -> build/bdist.linux-armv7l/wheel/coral/sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/coral/sequence
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/sequence/_sequence.py -> build/bdist.linux-armv7l/wheel/coral/sequence
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/design
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/_gibson.py -> build/bdist.linux-armv7l/wheel/coral/design
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/_primers.py -> build/bdist.linux-armv7l/wheel/coral/design
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/_sequence_generation/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/_sequence_generation/random_sequences.py -> build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/_oligo_synthesis/oligo_assembly.py -> build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/_oligo_synthesis/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis
2019-07-14T07:58:20   copying build/lib.linux-armv7l-3.7/coral/design/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design
2019-07-14T07:58:20   running install_egg_info
2019-07-14T07:58:20   Copying coral.egg-info to build/bdist.linux-armv7l/wheel/coral-0.1.0-py3.7.egg-info
2019-07-14T07:58:20   running install_scripts
2019-07-14T07:58:20   creating build/bdist.linux-armv7l/wheel/coral-0.1.0.dist-info/WHEEL
2019-07-14T07:58:20   creating '/tmp/pip-wheel-o5fb_768/coral-0.1.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-14T07:58:20   adding 'coral/__init__.py'
2019-07-14T07:58:20   adding 'coral/analysis/__init__.py'
2019-07-14T07:58:20   adding 'coral/analysis/utils.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequence/__init__.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequence/melting_temp.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequence/repeats.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequence/tm_params.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/__init__.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/align.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/calign.c'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/calign.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/needle.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/sanger.py'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/data/BLOSUM62'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/data/DNA'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/data/DNA_simple'
2019-07-14T07:58:20   adding 'coral/analysis/_sequencing/data/__init__.py'
2019-07-14T07:58:20   adding 'coral/analysis/_structure/__init__.py'
2019-07-14T07:58:20   adding 'coral/analysis/_structure/dimers.py'
2019-07-14T07:58:20   adding 'coral/analysis/_structure/nupack.py'
2019-07-14T07:58:20   adding 'coral/analysis/_structure/structure_windows.py'
2019-07-14T07:58:20   adding 'coral/analysis/_structure/vienna.py'
2019-07-14T07:58:20   adding 'coral/constants/__init__.py'
2019-07-14T07:58:20   adding 'coral/constants/genbank.py'
2019-07-14T07:58:20   adding 'coral/constants/molecular_bio.py'
2019-07-14T07:58:20   adding 'coral/constants/restriction_sites.py'
2019-07-14T07:58:20   adding 'coral/database/__init__.py'
2019-07-14T07:58:20   adding 'coral/database/_entrez.py'
2019-07-14T07:58:20   adding 'coral/database/_rebase.py'
2019-07-14T07:58:20   adding 'coral/database/_yeast.py'
2019-07-14T07:58:20   adding 'coral/design/__init__.py'
2019-07-14T07:58:20   adding 'coral/design/_gibson.py'
2019-07-14T07:58:20   adding 'coral/design/_primers.py'
2019-07-14T07:58:20   adding 'coral/design/_oligo_synthesis/__init__.py'
2019-07-14T07:58:20   adding 'coral/design/_oligo_synthesis/oligo_assembly.py'
2019-07-14T07:58:20   adding 'coral/design/_sequence_generation/__init__.py'
2019-07-14T07:58:20   adding 'coral/design/_sequence_generation/random_sequences.py'
2019-07-14T07:58:20   adding 'coral/reaction/__init__.py'
2019-07-14T07:58:20   adding 'coral/reaction/_central_dogma.py'
2019-07-14T07:58:20   adding 'coral/reaction/_gibson.py'
2019-07-14T07:58:20   adding 'coral/reaction/_oligo_assembly.py'
2019-07-14T07:58:20   adding 'coral/reaction/_pcr.py'
2019-07-14T07:58:20   adding 'coral/reaction/_resect.py'
2019-07-14T07:58:20   adding 'coral/reaction/_restriction.py'
2019-07-14T07:58:20   adding 'coral/reaction/utils.py'
2019-07-14T07:58:20   adding 'coral/seqio/__init__.py'
2019-07-14T07:58:20   adding 'coral/seqio/_dna.py'
2019-07-14T07:58:20   adding 'coral/sequence/__init__.py'
2019-07-14T07:58:20   adding 'coral/sequence/_dna.py'
2019-07-14T07:58:20   adding 'coral/sequence/_peptide.py'
2019-07-14T07:58:20   adding 'coral/sequence/_rna.py'
2019-07-14T07:58:20   adding 'coral/sequence/_sequence.py'
2019-07-14T07:58:20   adding 'coral-0.1.0.dist-info/METADATA'
2019-07-14T07:58:20   adding 'coral-0.1.0.dist-info/WHEEL'
2019-07-14T07:58:20   adding 'coral-0.1.0.dist-info/top_level.txt'
2019-07-14T07:58:20   adding 'coral-0.1.0.dist-info/RECORD'
2019-07-14T07:58:20   removing build/bdist.linux-armv7l/wheel
2019-07-14T07:58:21   Building wheel for coral (setup.py): finished with status 'done'
2019-07-14T07:58:21   Stored in directory: /tmp/tmpegn9lerr
2019-07-14T07:58:21 Successfully built coral
2019-07-14T07:58:21 Cleaning up...
2019-07-14T07:58:21   Removing source in /tmp/pip-wheel-axatn5ys/coral
2019-07-14T07:58:21 Removed build tracker '/tmp/pip-req-tracker-ces90r04'