2019-07-14T15:43:23 Created temporary directory: /tmp/pip-ephem-wheel-cache-fqnsxs00
2019-07-14T15:43:23 Created temporary directory: /tmp/pip-req-tracker-2m5uka0z
2019-07-14T15:43:23 Created requirements tracker '/tmp/pip-req-tracker-2m5uka0z'
2019-07-14T15:43:23 Created temporary directory: /tmp/pip-wheel-wx9asy0u
2019-07-14T15:43:23 Collecting gat==1.3.2
2019-07-14T15:43:23   1 location(s) to search for versions of gat:
2019-07-14T15:43:23   * https://pypi.org/simple/gat/
2019-07-14T15:43:23   Getting page https://pypi.org/simple/gat/
2019-07-14T15:43:24   Analyzing links from page https://pypi.org/simple/gat/
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5
2019-07-14T15:43:24     Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6
2019-07-14T15:43:24   Using version 1.3.2 (newest of versions: 1.3.2)
2019-07-14T15:43:24   Created temporary directory: /tmp/pip-unpack-vrk5svxf
2019-07-14T15:43:24   Downloading https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz (90kB)
2019-07-14T15:43:24   Downloading from URL https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/)
2019-07-14T15:43:27   Added gat==1.3.2 from https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e to build tracker '/tmp/pip-req-tracker-2m5uka0z'
2019-07-14T15:43:27     Running setup.py (path:/tmp/pip-wheel-wx9asy0u/gat/setup.py) egg_info for package gat
2019-07-14T15:43:27     Running command python setup.py egg_info
2019-07-14T15:43:37     running egg_info
2019-07-14T15:43:37     creating pip-egg-info/gat.egg-info
2019-07-14T15:43:37     writing pip-egg-info/gat.egg-info/PKG-INFO
2019-07-14T15:43:37     writing dependency_links to pip-egg-info/gat.egg-info/dependency_links.txt
2019-07-14T15:43:37     writing requirements to pip-egg-info/gat.egg-info/requires.txt
2019-07-14T15:43:37     writing top-level names to pip-egg-info/gat.egg-info/top_level.txt
2019-07-14T15:43:37     writing manifest file 'pip-egg-info/gat.egg-info/SOURCES.txt'
2019-07-14T15:43:38     reading manifest file 'pip-egg-info/gat.egg-info/SOURCES.txt'
2019-07-14T15:43:38     reading manifest template 'MANIFEST.in'
2019-07-14T15:43:38     Error processing line 1 of /home/piwheels/.local/lib/python3.7/site-packages/zzz_register_dansk_encoding.pth:

2019-07-14T15:43:38       Traceback (most recent call last):
2019-07-14T15:43:38         File "/usr/lib/python3.7/site.py", line 174, in addpackage
2019-07-14T15:43:38           exec(line)
2019-07-14T15:43:38         File "<string>", line 1, in <module>
2019-07-14T15:43:38       ModuleNotFoundError: No module named 'dansk'

2019-07-14T15:43:38     Remainder of file ignored
2019-07-14T15:43:38     warning: no files found matching 'COPYING'
2019-07-14T15:43:38     warning: no files found matching 'INSTALL'
2019-07-14T15:43:38     warning: no files found matching 'KNOWN_BUGS'
2019-07-14T15:43:38     warning: no files found matching 'THANKS'
2019-07-14T15:43:38     writing manifest file 'pip-egg-info/gat.egg-info/SOURCES.txt'
2019-07-14T15:43:38   Source in /tmp/pip-wheel-wx9asy0u/gat has version 1.3.2, which satisfies requirement gat==1.3.2 from https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e
2019-07-14T15:43:38   Removed gat==1.3.2 from https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e from build tracker '/tmp/pip-req-tracker-2m5uka0z'
2019-07-14T15:43:38 Building wheels for collected packages: gat
2019-07-14T15:43:38   Created temporary directory: /tmp/pip-wheel-n5lvs9v4
2019-07-14T15:43:38   Building wheel for gat (setup.py): started
2019-07-14T15:43:38   Destination directory: /tmp/pip-wheel-n5lvs9v4
2019-07-14T15:43:38   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-wx9asy0u/gat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n5lvs9v4
2019-07-14T15:43:38   Error processing line 1 of /home/piwheels/.local/lib/python3.7/site-packages/zzz_register_dansk_encoding.pth:

2019-07-14T15:43:39     Traceback (most recent call last):
2019-07-14T15:43:39       File "/usr/lib/python3.7/site.py", line 174, in addpackage
2019-07-14T15:43:39         exec(line)
2019-07-14T15:43:39       File "<string>", line 1, in <module>
2019-07-14T15:43:39     ModuleNotFoundError: No module named 'dansk'

2019-07-14T15:43:39   Remainder of file ignored
2019-07-14T15:43:46   running bdist_wheel
2019-07-14T15:43:46   running build
2019-07-14T15:43:46   running build_py
2019-07-14T15:43:46   creating build
2019-07-14T15:43:46   creating build/lib.linux-armv7l-3.7
2019-07-14T15:43:46   creating build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:46   copying gat/IO.py -> build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:46   copying gat/Bed.py -> build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:46   copying gat/Stats.py -> build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:47   copying gat/Experiment.py -> build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:47   copying gat/__init__.py -> build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:47   copying gat/IOTools.py -> build/lib.linux-armv7l-3.7/gat
2019-07-14T15:43:47   running build_ext
2019-07-14T15:43:47   cythoning gat/CoordinateList.pyx to gat/CoordinateList.c
2019-07-14T15:43:49   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-wx9asy0u/gat/gat/CoordinateList.pxd
2019-07-14T15:43:49     tree = Parsing.p_module(s, pxd, full_module_name)
2019-07-14T15:43:50   building 'gat.CoordinateList' extension
2019-07-14T15:43:50   creating build/temp.linux-armv7l-3.7
2019-07-14T15:43:50   creating build/temp.linux-armv7l-3.7/gat
2019-07-14T15:43:50   creating build/temp.linux-armv7l-3.7/utils
2019-07-14T15:43:50   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c gat/CoordinateList.c -o build/temp.linux-armv7l-3.7/gat/CoordinateList.o
2019-07-14T15:44:00   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c utils/gat_utils.c -o build/temp.linux-armv7l-3.7/utils/gat_utils.o
2019-07-14T15:44:02   utils/gat_utils.c: In function ‘fromCompressedFile’:
2019-07-14T15:44:02   utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types]
2019-07-14T15:44:02      int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size);
2019-07-14T15:44:02                                    ^~~~~~~~~~~~~~~~~~
2019-07-14T15:44:02   In file included from /usr/include/zlib.h:34,
2019-07-14T15:44:02                    from utils/gat_utils.c:2:
2019-07-14T15:44:02   /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’}
2019-07-14T15:44:02    ZEXTERN int ZEXPORT uncompress OF((Bytef *dest,   uLongf *destLen,
2019-07-14T15:44:02                                   ^~
2019-07-14T15:44:02   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/gat/CoordinateList.o build/temp.linux-armv7l-3.7/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.7/gat/CoordinateList.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T15:44:05   cythoning gat/SegmentList.pyx to gat/SegmentList.c
2019-07-14T15:44:05   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-wx9asy0u/gat/gat/SegmentList.pxd
2019-07-14T15:44:05     tree = Parsing.p_module(s, pxd, full_module_name)
2019-07-14T15:44:15   building 'gat.SegmentList' extension
2019-07-14T15:44:15   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c gat/SegmentList.c -o build/temp.linux-armv7l-3.7/gat/SegmentList.o
2019-07-14T15:44:17   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-14T15:44:17                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-14T15:44:17                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T15:44:17                    from gat/SegmentList.c:624:
2019-07-14T15:44:17   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-14T15:44:17    #warning "Using deprecated NumPy API, disable it with " \
2019-07-14T15:44:17     ^~~~~~~
2019-07-14T15:44:21   gat/SegmentList.c:3532:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpDouble’ defined but not used [-Wunused-function]
2019-07-14T15:44:21    static int __pyx_f_3gat_11SegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-07-14T15:44:21               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:44:21   gat/SegmentList.c:3498:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpPosition’ defined but not used [-Wunused-function]
2019-07-14T15:44:21    static int __pyx_f_3gat_11SegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-07-14T15:44:21               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:44:54   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c utils/gat_utils.c -o build/temp.linux-armv7l-3.7/utils/gat_utils.o
2019-07-14T15:44:55   utils/gat_utils.c: In function ‘fromCompressedFile’:
2019-07-14T15:44:55   utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types]
2019-07-14T15:44:55      int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size);
2019-07-14T15:44:55                                    ^~~~~~~~~~~~~~~~~~
2019-07-14T15:44:55   In file included from /usr/include/zlib.h:34,
2019-07-14T15:44:55                    from utils/gat_utils.c:2:
2019-07-14T15:44:55   /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’}
2019-07-14T15:44:55    ZEXTERN int ZEXPORT uncompress OF((Bytef *dest,   uLongf *destLen,
2019-07-14T15:44:55                                   ^~
2019-07-14T15:44:55   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/gat/SegmentList.o build/temp.linux-armv7l-3.7/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.7/gat/SegmentList.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T15:44:57   cythoning gat/PositionList.pyx to gat/PositionList.c
2019-07-14T15:44:57   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-wx9asy0u/gat/gat/PositionList.pxd
2019-07-14T15:44:57     tree = Parsing.p_module(s, pxd, full_module_name)
2019-07-14T15:45:00   building 'gat.PositionList' extension
2019-07-14T15:45:00   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c gat/PositionList.c -o build/temp.linux-armv7l-3.7/gat/PositionList.o
2019-07-14T15:45:05   gat/PositionList.c:1769:18: warning: ‘__pyx_f_3gat_12PositionList_force_bytes’ defined but not used [-Wunused-function]
2019-07-14T15:45:05    static PyObject *__pyx_f_3gat_12PositionList_force_bytes(PyObject *__pyx_v_s, struct __pyx_opt_args_3gat_12PositionList_force_bytes *__pyx_optional_args) {
2019-07-14T15:45:05                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:19   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c utils/gat_utils.c -o build/temp.linux-armv7l-3.7/utils/gat_utils.o
2019-07-14T15:45:20   utils/gat_utils.c: In function ‘fromCompressedFile’:
2019-07-14T15:45:20   utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types]
2019-07-14T15:45:20      int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size);
2019-07-14T15:45:20                                    ^~~~~~~~~~~~~~~~~~
2019-07-14T15:45:20   In file included from /usr/include/zlib.h:34,
2019-07-14T15:45:20                    from utils/gat_utils.c:2:
2019-07-14T15:45:20   /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’}
2019-07-14T15:45:20    ZEXTERN int ZEXPORT uncompress OF((Bytef *dest,   uLongf *destLen,
2019-07-14T15:45:20                                   ^~
2019-07-14T15:45:20   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/gat/PositionList.o build/temp.linux-armv7l-3.7/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.7/gat/PositionList.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T15:45:21   cythoning gat/Engine.pyx to gat/Engine.c
2019-07-14T15:45:21   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-wx9asy0u/gat/gat/Engine.pxd
2019-07-14T15:45:21     tree = Parsing.p_module(s, pxd, full_module_name)
2019-07-14T15:45:33   building 'gat.Engine' extension
2019-07-14T15:45:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c gat/Engine.c -o build/temp.linux-armv7l-3.7/gat/Engine.o
2019-07-14T15:45:36   In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-14T15:45:36                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-14T15:45:36                    from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-14T15:45:36                    from gat/Engine.c:622:
2019-07-14T15:45:36   /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-14T15:45:36    #warning "Using deprecated NumPy API, disable it with " \
2019-07-14T15:45:36     ^~~~~~~
2019-07-14T15:45:50   gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_13SamplesCached_12load’:
2019-07-14T15:45:50   gat/Engine.c:55579:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
2019-07-14T15:45:50      (void)(fread((&__pyx_v_nsegments), (sizeof(__pyx_t_3gat_11SegmentList_Position)), 1, __pyx_v_self->fcache));
2019-07-14T15:45:50            ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:50   gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_13SamplesCached_2loadIndex’:
2019-07-14T15:45:50   gat/Engine.c:54445:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
2019-07-14T15:45:50        (void)(fread((&__pyx_v_keylen), (sizeof(char)), 1, __pyx_v_findex));
2019-07-14T15:45:50              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:50   gat/Engine.c:54482:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
2019-07-14T15:45:50        (void)(fread(__pyx_v_ckey, (sizeof(char)), __pyx_v_keylen, __pyx_v_findex));
2019-07-14T15:45:50              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:50   gat/Engine.c:54491:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
2019-07-14T15:45:50        (void)(fread((&__pyx_v_pos), (sizeof(off_t)), 1, __pyx_v_findex));
2019-07-14T15:45:50              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:51   At top level:
2019-07-14T15:45:51   gat/Engine.c:23887:13: warning: ‘__pyx_f_3gat_6Engine_compressSampleIndex’ defined but not used [-Wunused-function]
2019-07-14T15:45:51    static void __pyx_f_3gat_6Engine_compressSampleIndex(__pyx_t_3gat_6Engine_EnrichmentStatistics *__pyx_v_stats) {
2019-07-14T15:45:51                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:51   gat/Engine.c:5201:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function]
2019-07-14T15:45:51    static int __pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-07-14T15:45:51               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:45:51   gat/Engine.c:5164:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegments’ defined but not used [-Wunused-function]
2019-07-14T15:45:51    static int __pyx_f_3gat_6Engine_cmpSegments(const void* __pyx_v_s1, const void* __pyx_v_s2) {
2019-07-14T15:45:51               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-07-14T15:46:52   gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_24SamplerGlobalPermutation_sample’:
2019-07-14T15:46:52   gat/Engine.c:526:40: warning: ‘__pyx_v_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2019-07-14T15:46:52      #define PyInt_FromLong               PyLong_FromLong
2019-07-14T15:46:52                                           ^~~~~~~~~~~~~~~
2019-07-14T15:46:52   gat/Engine.c:17707:49: note: ‘__pyx_v_start’ was declared here
2019-07-14T15:46:52      __pyx_t_3gat_11SegmentList_PositionDifference __pyx_v_start;
2019-07-14T15:46:52                                                    ^~~~~~~~~~~~~
2019-07-14T15:48:48   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c utils/gat_utils.c -o build/temp.linux-armv7l-3.7/utils/gat_utils.o
2019-07-14T15:48:50   utils/gat_utils.c: In function ‘fromCompressedFile’:
2019-07-14T15:48:50   utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types]
2019-07-14T15:48:50      int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size);
2019-07-14T15:48:50                                    ^~~~~~~~~~~~~~~~~~
2019-07-14T15:48:50   In file included from /usr/include/zlib.h:34,
2019-07-14T15:48:50                    from utils/gat_utils.c:2:
2019-07-14T15:48:50   /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’}
2019-07-14T15:48:50    ZEXTERN int ZEXPORT uncompress OF((Bytef *dest,   uLongf *destLen,
2019-07-14T15:48:50                                   ^~
2019-07-14T15:48:50   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/gat/Engine.o build/temp.linux-armv7l-3.7/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.7/gat/Engine.cpython-37m-arm-linux-gnueabihf.so
2019-07-14T15:48:52   running build_scripts
2019-07-14T15:48:52   creating build/scripts-3.7
2019-07-14T15:48:52   copying and adjusting scripts/gat-run.py -> build/scripts-3.7
2019-07-14T15:48:52   copying and adjusting scripts/gat-great.py -> build/scripts-3.7
2019-07-14T15:48:52   copying and adjusting scripts/gat-compare.py -> build/scripts-3.7
2019-07-14T15:48:53   copying and adjusting scripts/gat-plot.py -> build/scripts-3.7
2019-07-14T15:48:53   changing mode of build/scripts-3.7/gat-run.py from 644 to 755
2019-07-14T15:48:53   changing mode of build/scripts-3.7/gat-great.py from 644 to 755
2019-07-14T15:48:53   changing mode of build/scripts-3.7/gat-compare.py from 644 to 755
2019-07-14T15:48:53   changing mode of build/scripts-3.7/gat-plot.py from 644 to 755
2019-07-14T15:48:53   installing to build/bdist.linux-armv7l/wheel
2019-07-14T15:48:53   running install
2019-07-14T15:48:53   running install_lib
2019-07-14T15:48:53   creating build/bdist.linux-armv7l
2019-07-14T15:48:53   creating build/bdist.linux-armv7l/wheel
2019-07-14T15:48:53   creating build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:53   copying build/lib.linux-armv7l-3.7/gat/IO.py -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:53   copying build/lib.linux-armv7l-3.7/gat/Engine.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:53   copying build/lib.linux-armv7l-3.7/gat/Bed.py -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/Stats.py -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/PositionList.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/SegmentList.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/Experiment.py -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/__init__.py -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/CoordinateList.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   copying build/lib.linux-armv7l-3.7/gat/IOTools.py -> build/bdist.linux-armv7l/wheel/gat
2019-07-14T15:48:54   running install_egg_info
2019-07-14T15:48:54   running egg_info
2019-07-14T15:48:54   writing gat.egg-info/PKG-INFO
2019-07-14T15:48:54   writing dependency_links to gat.egg-info/dependency_links.txt
2019-07-14T15:48:55   writing requirements to gat.egg-info/requires.txt
2019-07-14T15:48:55   writing top-level names to gat.egg-info/top_level.txt
2019-07-14T15:48:55   reading manifest file 'gat.egg-info/SOURCES.txt'
2019-07-14T15:48:55   reading manifest template 'MANIFEST.in'
2019-07-14T15:48:55   warning: no files found matching 'COPYING'
2019-07-14T15:48:55   warning: no files found matching 'INSTALL'
2019-07-14T15:48:55   warning: no files found matching 'KNOWN_BUGS'
2019-07-14T15:48:55   warning: no files found matching 'THANKS'
2019-07-14T15:48:55   writing manifest file 'gat.egg-info/SOURCES.txt'
2019-07-14T15:48:55   Copying gat.egg-info to build/bdist.linux-armv7l/wheel/gat-1.3.2-py3.7.egg-info
2019-07-14T15:48:55   running install_scripts
2019-07-14T15:48:56   creating build/bdist.linux-armv7l/wheel/gat-1.3.2.data
2019-07-14T15:48:56   creating build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts
2019-07-14T15:48:56   copying build/scripts-3.7/gat-plot.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts
2019-07-14T15:48:56   copying build/scripts-3.7/gat-compare.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts
2019-07-14T15:48:56   copying build/scripts-3.7/gat-run.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts
2019-07-14T15:48:56   copying build/scripts-3.7/gat-great.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts
2019-07-14T15:48:56   changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-plot.py to 755
2019-07-14T15:48:56   changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-compare.py to 755
2019-07-14T15:48:56   changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-run.py to 755
2019-07-14T15:48:56   changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-great.py to 755
2019-07-14T15:48:57   creating build/bdist.linux-armv7l/wheel/gat-1.3.2.dist-info/WHEEL
2019-07-14T15:48:57   creating '/tmp/pip-wheel-n5lvs9v4/gat-1.3.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-14T15:48:57   adding 'gat/Bed.py'
2019-07-14T15:48:57   adding 'gat/CoordinateList.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T15:48:58   adding 'gat/Engine.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T15:48:58   adding 'gat/Experiment.py'
2019-07-14T15:48:58   adding 'gat/IO.py'
2019-07-14T15:48:58   adding 'gat/IOTools.py'
2019-07-14T15:48:58   adding 'gat/PositionList.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T15:48:59   adding 'gat/SegmentList.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T15:48:59   adding 'gat/Stats.py'
2019-07-14T15:48:59   adding 'gat/__init__.py'
2019-07-14T15:48:59   adding 'gat-1.3.2.data/scripts/gat-compare.py'
2019-07-14T15:48:59   adding 'gat-1.3.2.data/scripts/gat-great.py'
2019-07-14T15:48:59   adding 'gat-1.3.2.data/scripts/gat-plot.py'
2019-07-14T15:48:59   adding 'gat-1.3.2.data/scripts/gat-run.py'
2019-07-14T15:48:59   adding 'gat-1.3.2.dist-info/METADATA'
2019-07-14T15:48:59   adding 'gat-1.3.2.dist-info/WHEEL'
2019-07-14T15:48:59   adding 'gat-1.3.2.dist-info/pbr.json'
2019-07-14T15:48:59   adding 'gat-1.3.2.dist-info/top_level.txt'
2019-07-14T15:48:59   adding 'gat-1.3.2.dist-info/RECORD'
2019-07-14T15:48:59   removing build/bdist.linux-armv7l/wheel
2019-07-14T15:49:00   Building wheel for gat (setup.py): finished with status 'done'
2019-07-14T15:49:00   Stored in directory: /tmp/tmpxc0vs70j
2019-07-14T15:49:00 Successfully built gat
2019-07-14T15:49:00 Cleaning up...
2019-07-14T15:49:00   Removing source in /tmp/pip-wheel-wx9asy0u/gat
2019-07-14T15:49:02 Removed build tracker '/tmp/pip-req-tracker-2m5uka0z'