2019-07-14T18:03:53 Created temporary directory: /tmp/pip-ephem-wheel-cache-mzshqk79 2019-07-14T18:03:53 Created temporary directory: /tmp/pip-req-tracker-9mgevu1w 2019-07-14T18:03:53 Created requirements tracker '/tmp/pip-req-tracker-9mgevu1w' 2019-07-14T18:03:53 Created temporary directory: /tmp/pip-wheel-xamtq3sk 2019-07-14T18:03:53 Collecting yaff==1.4.1 2019-07-14T18:03:53 1 location(s) to search for versions of yaff: 2019-07-14T18:03:53 * https://pypi.org/simple/yaff/ 2019-07-14T18:03:53 Getting page https://pypi.org/simple/yaff/ 2019-07-14T18:03:53 Analyzing links from page https://pypi.org/simple/yaff/ 2019-07-14T18:03:53 Found link https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz#sha256=634d80f7afecf3003225aa0e06f4c95fcf4a1795d43b7210c0dd01df19b7e3c9 (from https://pypi.org/simple/yaff/), version: 1.2.0 2019-07-14T18:03:53 Found link https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz#sha256=536c62b0cc741a176309927dd6a47b6b449268f96e0556767faa624fae9f430f (from https://pypi.org/simple/yaff/), version: 1.3.0 2019-07-14T18:03:53 Found link https://files.pythonhosted.org/packages/18/d1/80fd22fb23b0991a9f09a7efc0f163d764205bac1eaed4fa6b322a6f7482/yaff-1.4.0.tar.gz#sha256=502dce64b79be76f240fdd4b9e85a959eeb5733eb2cd4386b4c047f9318434ad (from https://pypi.org/simple/yaff/), version: 1.4.0 2019-07-14T18:03:53 Found link https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz#sha256=360be217d2ebdc31b847c6e47f466f3f257990ed3ab3708711848ad128b82afa (from https://pypi.org/simple/yaff/), version: 1.4.1 2019-07-14T18:03:53 Found link https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz#sha256=7bd303f8a2c34d139cbba830b18ebfadb890d8a45f48e160c58dc66c974bba78 (from https://pypi.org/simple/yaff/), version: 1.4.2 2019-07-14T18:03:53 Using version 1.4.1 (newest of versions: 1.4.1) 2019-07-14T18:03:53 Created temporary directory: /tmp/pip-unpack-2f5u328c 2019-07-14T18:03:54 Downloading https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz (654kB) 2019-07-14T18:03:54 Downloading from URL https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz#sha256=360be217d2ebdc31b847c6e47f466f3f257990ed3ab3708711848ad128b82afa (from https://pypi.org/simple/yaff/) 2019-07-14T18:03:55 Added yaff==1.4.1 from https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz#sha256=360be217d2ebdc31b847c6e47f466f3f257990ed3ab3708711848ad128b82afa to build tracker '/tmp/pip-req-tracker-9mgevu1w' 2019-07-14T18:03:55 Running setup.py (path:/tmp/pip-wheel-xamtq3sk/yaff/setup.py) egg_info for package yaff 2019-07-14T18:03:55 Running command python setup.py egg_info 2019-07-14T18:03:58 fatal: not a git repository (or any of the parent directories): .git 2019-07-14T18:03:58 Trying to get the version from git describe 2019-07-14T18:03:58 Trying to get the version from {} /tmp/pip-wheel-xamtq3sk/yaff/yaff/version.py 2019-07-14T18:03:58 Version according to /tmp/pip-wheel-xamtq3sk/yaff/yaff/version.py: 1.4.1 2019-07-14T18:03:58 running egg_info 2019-07-14T18:03:58 creating pip-egg-info/yaff.egg-info 2019-07-14T18:03:58 writing pip-egg-info/yaff.egg-info/PKG-INFO 2019-07-14T18:03:58 writing dependency_links to pip-egg-info/yaff.egg-info/dependency_links.txt 2019-07-14T18:03:58 writing requirements to pip-egg-info/yaff.egg-info/requires.txt 2019-07-14T18:03:58 writing top-level names to pip-egg-info/yaff.egg-info/top_level.txt 2019-07-14T18:03:58 writing manifest file 'pip-egg-info/yaff.egg-info/SOURCES.txt' 2019-07-14T18:03:59 reading manifest file 'pip-egg-info/yaff.egg-info/SOURCES.txt' 2019-07-14T18:03:59 reading manifest template 'MANIFEST.in' 2019-07-14T18:03:59 warning: no files found matching 'README' 2019-07-14T18:03:59 warning: no files found matching 'LICENSE.txt' 2019-07-14T18:04:00 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2019-07-14T18:04:00 writing manifest file 'pip-egg-info/yaff.egg-info/SOURCES.txt' 2019-07-14T18:04:00 Source in /tmp/pip-wheel-xamtq3sk/yaff has version 1.4.1, which satisfies requirement yaff==1.4.1 from https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz#sha256=360be217d2ebdc31b847c6e47f466f3f257990ed3ab3708711848ad128b82afa 2019-07-14T18:04:00 Removed yaff==1.4.1 from https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz#sha256=360be217d2ebdc31b847c6e47f466f3f257990ed3ab3708711848ad128b82afa from build tracker '/tmp/pip-req-tracker-9mgevu1w' 2019-07-14T18:04:00 Building wheels for collected packages: yaff 2019-07-14T18:04:00 Created temporary directory: /tmp/pip-wheel-pfqux3b7 2019-07-14T18:04:00 Building wheel for yaff (setup.py): started 2019-07-14T18:04:00 Destination directory: /tmp/pip-wheel-pfqux3b7 2019-07-14T18:04:00 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-xamtq3sk/yaff/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pfqux3b7 2019-07-14T18:04:03 Trying to get the version from git describe 2019-07-14T18:04:03 fatal: not a git repository (or any of the parent directories): .git 2019-07-14T18:04:03 Trying to get the version from {} /tmp/pip-wheel-xamtq3sk/yaff/yaff/version.py 2019-07-14T18:04:03 Version according to /tmp/pip-wheel-xamtq3sk/yaff/yaff/version.py: 1.4.1 2019-07-14T18:04:03 running bdist_wheel 2019-07-14T18:04:03 running build 2019-07-14T18:04:03 running build_py 2019-07-14T18:04:03 creating build 2019-07-14T18:04:03 creating build/lib.linux-armv7l-3.7 2019-07-14T18:04:03 creating build/lib.linux-armv7l-3.7/yaff 2019-07-14T18:04:03 copying yaff/version.py -> build/lib.linux-armv7l-3.7/yaff 2019-07-14T18:04:03 copying yaff/__init__.py -> build/lib.linux-armv7l-3.7/yaff 2019-07-14T18:04:03 copying yaff/atselect.py -> build/lib.linux-armv7l-3.7/yaff 2019-07-14T18:04:03 copying yaff/system.py -> build/lib.linux-armv7l-3.7/yaff 2019-07-14T18:04:03 copying yaff/log.py -> build/lib.linux-armv7l-3.7/yaff 2019-07-14T18:04:03 creating build/lib.linux-armv7l-3.7/yaff/test 2019-07-14T18:04:03 copying yaff/test/__init__.py -> build/lib.linux-armv7l-3.7/yaff/test 2019-07-14T18:04:03 copying yaff/test/common.py -> build/lib.linux-armv7l-3.7/yaff/test 2019-07-14T18:04:03 copying yaff/test/test_atselect.py -> build/lib.linux-armv7l-3.7/yaff/test 2019-07-14T18:04:03 copying yaff/test/test_examples.py -> build/lib.linux-armv7l-3.7/yaff/test 2019-07-14T18:04:03 copying yaff/test/test_system.py -> build/lib.linux-armv7l-3.7/yaff/test 2019-07-14T18:04:03 creating build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/parameters.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/__init__.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/iclist.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/vlist.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/nlist.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/ff.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/generator.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/scaling.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 copying yaff/pes/dlist.py -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:03 creating build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_generator.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_grid.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_dlist.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_scaling.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/__init__.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_pext.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_nlist.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_md.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_topology.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_iclist.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/common.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_cell.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_vlist.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:03 copying yaff/pes/test/test_pair_pot.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:04 copying yaff/pes/test/test_truncation.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:04 copying yaff/pes/test/test_ewald.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:04 copying yaff/pes/test/test_parameters.py -> build/lib.linux-armv7l-3.7/yaff/pes/test 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/utils.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/opt.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/__init__.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/npt.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/iterative.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/nvt.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/dof.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/io.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/trajectory.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/verlet.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 copying yaff/sampling/harmonic.py -> build/lib.linux-armv7l-3.7/yaff/sampling 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_utils.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/__init__.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_opt.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_npt.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/common.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_verlet.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_harmonic.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_nvt.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 copying yaff/sampling/test/test_dof.py -> build/lib.linux-armv7l-3.7/yaff/sampling/test 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/basic.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/diffusion.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/utils.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/pca.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/__init__.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/blav.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/spectrum.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/rdf.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 copying yaff/analysis/hook.py -> build/lib.linux-armv7l-3.7/yaff/analysis 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/test_rdf.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/__init__.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/test_blav.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/common.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/test_spectrum.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/test_basic.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 copying yaff/analysis/test/test_diffusion.py -> build/lib.linux-armv7l-3.7/yaff/analysis/test 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/tune 2019-07-14T18:04:04 copying yaff/tune/cost.py -> build/lib.linux-armv7l-3.7/yaff/tune 2019-07-14T18:04:04 copying yaff/tune/__init__.py -> build/lib.linux-armv7l-3.7/yaff/tune 2019-07-14T18:04:04 copying yaff/tune/transform.py -> build/lib.linux-armv7l-3.7/yaff/tune 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/tune/test 2019-07-14T18:04:04 copying yaff/tune/test/__init__.py -> build/lib.linux-armv7l-3.7/yaff/tune/test 2019-07-14T18:04:04 copying yaff/tune/test/test_cost.py -> build/lib.linux-armv7l-3.7/yaff/tune/test 2019-07-14T18:04:04 copying yaff/tune/test/test_transform.py -> build/lib.linux-armv7l-3.7/yaff/tune/test 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 copying yaff/conversion/dlpoly.py -> build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 copying yaff/conversion/gaussian.py -> build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 copying yaff/conversion/__init__.py -> build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 copying yaff/conversion/xyz.py -> build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 copying yaff/conversion/cp2k.py -> build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 copying yaff/conversion/common.py -> build/lib.linux-armv7l-3.7/yaff/conversion 2019-07-14T18:04:04 creating build/lib.linux-armv7l-3.7/yaff/conversion/test 2019-07-14T18:04:04 copying yaff/conversion/test/test_xyz.py -> build/lib.linux-armv7l-3.7/yaff/conversion/test 2019-07-14T18:04:04 copying yaff/conversion/test/__init__.py -> build/lib.linux-armv7l-3.7/yaff/conversion/test 2019-07-14T18:04:04 copying yaff/conversion/test/test_cp2k.py -> build/lib.linux-armv7l-3.7/yaff/conversion/test 2019-07-14T18:04:04 copying yaff/conversion/test/test_gaussian.py -> build/lib.linux-armv7l-3.7/yaff/conversion/test 2019-07-14T18:04:04 copying yaff/conversion/test/test_dlpoly.py -> build/lib.linux-armv7l-3.7/yaff/conversion/test 2019-07-14T18:04:04 running egg_info 2019-07-14T18:04:04 writing yaff.egg-info/PKG-INFO 2019-07-14T18:04:04 writing dependency_links to yaff.egg-info/dependency_links.txt 2019-07-14T18:04:04 writing requirements to yaff.egg-info/requires.txt 2019-07-14T18:04:04 writing top-level names to yaff.egg-info/top_level.txt 2019-07-14T18:04:04 reading manifest file 'yaff.egg-info/SOURCES.txt' 2019-07-14T18:04:04 reading manifest template 'MANIFEST.in' 2019-07-14T18:04:04 warning: no files found matching 'README' 2019-07-14T18:04:04 warning: no files found matching 'LICENSE.txt' 2019-07-14T18:04:05 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2019-07-14T18:04:05 writing manifest file 'yaff.egg-info/SOURCES.txt' 2019-07-14T18:04:05 creating build/lib.linux-armv7l-3.7/yaff/data 2019-07-14T18:04:05 creating build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:05 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/alpha_quartz.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/alpha_quartz_distorted.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/cases.txt -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/merlonite_debug.pot -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/merlonite_fragment.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 copying yaff/data/opttest/water_dimer.chk -> build/lib.linux-armv7l-3.7/yaff/data/opttest 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/chloro_pos.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/chloro_vol.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/cp2k-1.ener -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/dlpoly_HISTORY_an1 -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/dlpoly_HISTORY_sam -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/dlpoly_HISTORY_uo -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/gaussian_sioh4_md.log -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/gaussian_sioh4_md.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/guaianolide.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/guaianolide_framework_ordered.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/nobornane.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_alkane.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_bks.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_d3bj.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_dampdisp1.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_exprep1.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_lj.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_mm3.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_qmdffrep.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_torsion1.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_fake_torsion2.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_formaldehyde_cross.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_formaldehyde_cross_alt.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_formaldehyde_inversion.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_formaldehyde_wrong_cross.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_glycine_fixq.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_glycine_torsion.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_nacl.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_polyene.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_bendaharm.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_bendcharm.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_bondcross.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_bondfues.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_bondharm.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_cross.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_dampdisp1.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_dampdisp2.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_exprep1.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_exprep2.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_exprep3.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_fixq.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_fixq_dielectric.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_lj.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_mm3.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_ubharm.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/parameters_water_wrong_cross.txt -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/rhodium_complex_nobornane.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/water_hessian.chk -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 copying yaff/data/test/water_trajectory.xyz -> build/lib.linux-armv7l-3.7/yaff/data/test 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples 2019-07-14T18:04:06 copying yaff/examples/.gitignore -> build/lib.linux-armv7l-3.7/yaff/examples 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/000_overview 2019-07-14T18:04:06 copying yaff/examples/000_overview/parameters.txt -> build/lib.linux-armv7l-3.7/yaff/examples/000_overview 2019-07-14T18:04:06 copying yaff/examples/000_overview/simulation.py -> build/lib.linux-armv7l-3.7/yaff/examples/000_overview 2019-07-14T18:04:06 copying yaff/examples/000_overview/system.chk -> build/lib.linux-armv7l-3.7/yaff/examples/000_overview 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/bks.pot -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/runall.py -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/init/mksystem.py -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/init/struct.xyz -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/nvt 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/nvt 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/nvt 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/opt 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/opt/analysis.py -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/opt 2019-07-14T18:04:06 copying yaff/examples/001_tutorial_bks/opt/simulation.py -> build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/opt 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/002_external_trajectory 2019-07-14T18:04:06 copying yaff/examples/002_external_trajectory/rdf.py -> build/lib.linux-armv7l-3.7/yaff/examples/002_external_trajectory 2019-07-14T18:04:06 copying yaff/examples/002_external_trajectory/trajectory.xyz -> build/lib.linux-armv7l-3.7/yaff/examples/002_external_trajectory 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat 2019-07-14T18:04:06 copying yaff/examples/003_water_thermostat/md.py -> build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat 2019-07-14T18:04:06 copying yaff/examples/003_water_thermostat/parameters.txt -> build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat 2019-07-14T18:04:06 copying yaff/examples/003_water_thermostat/system.chk -> build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat 2019-07-14T18:04:06 creating build/lib.linux-armv7l-3.7/yaff/examples/999_back_propagation 2019-07-14T18:04:06 copying yaff/examples/999_back_propagation/bp.py -> build/lib.linux-armv7l-3.7/yaff/examples/999_back_propagation 2019-07-14T18:04:06 copying yaff/pes/cell.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/cell.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/cell.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/constants.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/dlist.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/dlist.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/dlist.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/ewald.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/ewald.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/ewald.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/ext.pyx -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/grid.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/grid.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/grid.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/iclist.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/iclist.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/iclist.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/nlist.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/nlist.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/nlist.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/pair_pot.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/pair_pot.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/pair_pot.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/slater.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/slater.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/slater.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/truncation.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/truncation.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/truncation.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/vlist.c -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/vlist.h -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 copying yaff/pes/vlist.pxd -> build/lib.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:06 running build_ext 2019-07-14T18:04:06 cythoning yaff/pes/ext.pyx to yaff/pes/ext.c 2019-07-14T18:04:08 /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-xamtq3sk/yaff/yaff/pes/ext.pyx 2019-07-14T18:04:08 tree = Parsing.p_module(s, pxd, full_module_name) 2019-07-14T18:04:22 building 'yaff.pes.ext' extension 2019-07-14T18:04:22 creating build/temp.linux-armv7l-3.7 2019-07-14T18:04:22 creating build/temp.linux-armv7l-3.7/yaff 2019-07-14T18:04:22 creating build/temp.linux-armv7l-3.7/yaff/pes 2019-07-14T18:04:22 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/ext.c -o build/temp.linux-armv7l-3.7/yaff/pes/ext.o 2019-07-14T18:04:23 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-07-14T18:04:23 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-07-14T18:04:23 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T18:04:23 from yaff/pes/ext.c:613: 2019-07-14T18:04:23 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-07-14T18:04:23 #warning "Using deprecated NumPy API, disable it with " \ 2019-07-14T18:04:23 ^~~~~~~ 2019-07-14T18:07:05 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/nlist.c -o build/temp.linux-armv7l-3.7/yaff/pes/nlist.o 2019-07-14T18:07:05 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/pair_pot.c -o build/temp.linux-armv7l-3.7/yaff/pes/pair_pot.o 2019-07-14T18:07:07 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/ewald.c -o build/temp.linux-armv7l-3.7/yaff/pes/ewald.o 2019-07-14T18:07:09 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/dlist.c -o build/temp.linux-armv7l-3.7/yaff/pes/dlist.o 2019-07-14T18:07:09 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/grid.c -o build/temp.linux-armv7l-3.7/yaff/pes/grid.o 2019-07-14T18:07:09 yaff/pes/grid.c: In function ‘compute_grid3d’: 2019-07-14T18:07:09 yaff/pes/grid.c:46:20: warning: implicit declaration of function ‘floor’ [-Wimplicit-function-declaration] 2019-07-14T18:07:09 frac[i] -= floor(frac[i]); 2019-07-14T18:07:09 ^~~~~ 2019-07-14T18:07:09 yaff/pes/grid.c:46:20: warning: incompatible implicit declaration of built-in function ‘floor’ 2019-07-14T18:07:09 yaff/pes/grid.c:46:20: note: include ‘’ or provide a declaration of ‘floor’ 2019-07-14T18:07:09 yaff/pes/grid.c:32:1: 2019-07-14T18:07:09 +#include 2019-07-14T18:07:09 yaff/pes/grid.c:46:20: 2019-07-14T18:07:09 frac[i] -= floor(frac[i]); 2019-07-14T18:07:09 ^~~~~ 2019-07-14T18:07:09 yaff/pes/grid.c:35:36: warning: unused variable ‘e22’ [-Wunused-variable] 2019-07-14T18:07:09 double frac[3], e11, e12, e21, e22; 2019-07-14T18:07:09 ^~~ 2019-07-14T18:07:09 yaff/pes/grid.c:35:31: warning: unused variable ‘e21’ [-Wunused-variable] 2019-07-14T18:07:09 double frac[3], e11, e12, e21, e22; 2019-07-14T18:07:09 ^~~ 2019-07-14T18:07:09 yaff/pes/grid.c:35:26: warning: unused variable ‘e12’ [-Wunused-variable] 2019-07-14T18:07:09 double frac[3], e11, e12, e21, e22; 2019-07-14T18:07:09 ^~~ 2019-07-14T18:07:09 yaff/pes/grid.c:35:21: warning: unused variable ‘e11’ [-Wunused-variable] 2019-07-14T18:07:09 double frac[3], e11, e12, e21, e22; 2019-07-14T18:07:09 ^~~ 2019-07-14T18:07:10 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/iclist.c -o build/temp.linux-armv7l-3.7/yaff/pes/iclist.o 2019-07-14T18:07:11 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/vlist.c -o build/temp.linux-armv7l-3.7/yaff/pes/vlist.o 2019-07-14T18:07:12 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/cell.c -o build/temp.linux-armv7l-3.7/yaff/pes/cell.o 2019-07-14T18:07:13 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/truncation.c -o build/temp.linux-armv7l-3.7/yaff/pes/truncation.o 2019-07-14T18:07:14 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c yaff/pes/slater.c -o build/temp.linux-armv7l-3.7/yaff/pes/slater.o 2019-07-14T18:07:15 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/yaff/pes/ext.o build/temp.linux-armv7l-3.7/yaff/pes/nlist.o build/temp.linux-armv7l-3.7/yaff/pes/pair_pot.o build/temp.linux-armv7l-3.7/yaff/pes/ewald.o build/temp.linux-armv7l-3.7/yaff/pes/dlist.o build/temp.linux-armv7l-3.7/yaff/pes/grid.o build/temp.linux-armv7l-3.7/yaff/pes/iclist.o build/temp.linux-armv7l-3.7/yaff/pes/vlist.o build/temp.linux-armv7l-3.7/yaff/pes/cell.o build/temp.linux-armv7l-3.7/yaff/pes/truncation.o build/temp.linux-armv7l-3.7/yaff/pes/slater.o -o build/lib.linux-armv7l-3.7/yaff/pes/ext.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T18:07:16 running build_scripts 2019-07-14T18:07:16 creating build/scripts-3.7 2019-07-14T18:07:16 copying and adjusting scripts/yaff-opttest -> build/scripts-3.7 2019-07-14T18:07:16 changing mode of build/scripts-3.7/yaff-opttest from 644 to 755 2019-07-14T18:07:16 installing to build/bdist.linux-armv7l/wheel 2019-07-14T18:07:16 running install 2019-07-14T18:07:16 running install_lib 2019-07-14T18:07:16 creating build/bdist.linux-armv7l 2019-07-14T18:07:16 creating build/bdist.linux-armv7l/wheel 2019-07-14T18:07:16 creating build/bdist.linux-armv7l/wheel/yaff 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/version.py -> build/bdist.linux-armv7l/wheel/yaff 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/__init__.py -> build/bdist.linux-armv7l/wheel/yaff 2019-07-14T18:07:16 creating build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/basic.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/diffusion.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/utils.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/pca.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/blav.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/spectrum.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 creating build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/test_rdf.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/test_blav.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/test_spectrum.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/test_basic.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/test/test_diffusion.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/analysis/hook.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2019-07-14T18:07:16 creating build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/nlist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/vlist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/grid.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/vlist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/parameters.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/pair_pot.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/truncation.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/slater.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/ext.pyx -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/iclist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/vlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/nlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/iclist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/cell.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/iclist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/cell.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/ff.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/vlist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/pair_pot.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/dlist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/truncation.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:16 copying build/lib.linux-armv7l-3.7/yaff/pes/ext.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/iclist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/cell.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/ewald.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/dlist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 creating build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_generator.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_grid.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_dlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_scaling.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_pext.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_nlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_md.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_topology.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_iclist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_cell.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_vlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_pair_pot.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_truncation.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_ewald.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/test/test_parameters.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/grid.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/nlist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/constants.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/grid.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/nlist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/ewald.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/slater.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/pair_pot.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/truncation.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/generator.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/scaling.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/dlist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/dlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/slater.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/pes/ewald.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/atselect.py -> build/bdist.linux-armv7l/wheel/yaff 2019-07-14T18:07:17 creating build/bdist.linux-armv7l/wheel/yaff/data 2019-07-14T18:07:17 creating build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/alpha_quartz.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/merlonite_debug.pot -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/merlonite_fragment.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/water_dimer.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/cases.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/alpha_quartz_distorted.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2019-07-14T18:07:17 creating build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_nacl.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_d3bj.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/dlpoly_HISTORY_uo -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_dampdisp1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_dampdisp2.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_bondfues.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_bendaharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/cp2k-1.ener -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/dlpoly_HISTORY_sam -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_mm3.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_formaldehyde_wrong_cross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_mm3.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_glycine_fixq.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/gaussian_sioh4_md.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_exprep1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_torsion2.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/chloro_vol.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_exprep2.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/nobornane.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/gaussian_sioh4_md.log -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_bks.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_dampdisp1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_formaldehyde_cross_alt.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_exprep1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_formaldehyde_inversion.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_torsion1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_glycine_torsion.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/chloro_pos.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_lj.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_bendcharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_alkane.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_formaldehyde_cross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_polyene.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_fixq.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_wrong_cross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_lj.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_fake_qmdffrep.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_cross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_bondcross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/water_trajectory.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/guaianolide.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/rhodium_complex_nobornane.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_ubharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/water_hessian.chk -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_bondharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_exprep3.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/parameters_water_fixq_dielectric.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/dlpoly_HISTORY_an1 -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/data/test/guaianolide_framework_ordered.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2019-07-14T18:07:17 creating build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/sampling/utils.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:17 copying build/lib.linux-armv7l-3.7/yaff/sampling/opt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/npt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/iterative.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/nvt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/dof.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_utils.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_opt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_npt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_verlet.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_harmonic.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_nvt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/test/test_dof.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/io.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/trajectory.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/verlet.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/sampling/harmonic.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/999_back_propagation 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/999_back_propagation/bp.py -> build/bdist.linux-armv7l/wheel/yaff/examples/999_back_propagation 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/002_external_trajectory 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/002_external_trajectory/rdf.py -> build/bdist.linux-armv7l/wheel/yaff/examples/002_external_trajectory 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/002_external_trajectory/trajectory.xyz -> build/bdist.linux-armv7l/wheel/yaff/examples/002_external_trajectory 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat/system.chk -> build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat/md.py -> build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/003_water_thermostat/parameters.txt -> build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/nvt 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/nvt 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/nvt 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/opt 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/opt/simulation.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/opt 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/opt/analysis.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/opt 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/runall.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/bks.pot -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init/struct.xyz -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/001_tutorial_bks/init/mksystem.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/000_overview/system.chk -> build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/000_overview/parameters.txt -> build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/000_overview/simulation.py -> build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/examples/.gitignore -> build/bdist.linux-armv7l/wheel/yaff/examples 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/dlpoly.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/gaussian.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/xyz.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/cp2k.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/common.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/conversion/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/test/test_gaussian.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/conversion/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/test/test_atselect.py -> build/bdist.linux-armv7l/wheel/yaff/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/test/test_examples.py -> build/bdist.linux-armv7l/wheel/yaff/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/test/test_system.py -> build/bdist.linux-armv7l/wheel/yaff/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/system.py -> build/bdist.linux-armv7l/wheel/yaff 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/log.py -> build/bdist.linux-armv7l/wheel/yaff 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/tune 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/tune/cost.py -> build/bdist.linux-armv7l/wheel/yaff/tune 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/tune/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/tune 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff/tune/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/tune/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/tune/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/tune/test/test_cost.py -> build/bdist.linux-armv7l/wheel/yaff/tune/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/tune/test/test_transform.py -> build/bdist.linux-armv7l/wheel/yaff/tune/test 2019-07-14T18:07:18 copying build/lib.linux-armv7l-3.7/yaff/tune/transform.py -> build/bdist.linux-armv7l/wheel/yaff/tune 2019-07-14T18:07:18 running install_egg_info 2019-07-14T18:07:18 Copying yaff.egg-info to build/bdist.linux-armv7l/wheel/yaff-1.4.1-py3.7.egg-info 2019-07-14T18:07:18 running install_scripts 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff-1.4.1.data 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff-1.4.1.data/scripts 2019-07-14T18:07:18 copying build/scripts-3.7/yaff-opttest -> build/bdist.linux-armv7l/wheel/yaff-1.4.1.data/scripts 2019-07-14T18:07:18 changing mode of build/bdist.linux-armv7l/wheel/yaff-1.4.1.data/scripts/yaff-opttest to 755 2019-07-14T18:07:18 creating build/bdist.linux-armv7l/wheel/yaff-1.4.1.dist-info/WHEEL 2019-07-14T18:07:18 creating '/tmp/pip-wheel-pfqux3b7/yaff-1.4.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2019-07-14T18:07:18 adding 'yaff/__init__.py' 2019-07-14T18:07:18 adding 'yaff/atselect.py' 2019-07-14T18:07:18 adding 'yaff/log.py' 2019-07-14T18:07:18 adding 'yaff/system.py' 2019-07-14T18:07:18 adding 'yaff/version.py' 2019-07-14T18:07:18 adding 'yaff/analysis/__init__.py' 2019-07-14T18:07:18 adding 'yaff/analysis/basic.py' 2019-07-14T18:07:18 adding 'yaff/analysis/blav.py' 2019-07-14T18:07:18 adding 'yaff/analysis/diffusion.py' 2019-07-14T18:07:18 adding 'yaff/analysis/hook.py' 2019-07-14T18:07:18 adding 'yaff/analysis/pca.py' 2019-07-14T18:07:18 adding 'yaff/analysis/rdf.py' 2019-07-14T18:07:18 adding 'yaff/analysis/spectrum.py' 2019-07-14T18:07:18 adding 'yaff/analysis/utils.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/__init__.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/common.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/test_basic.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/test_blav.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/test_diffusion.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/test_rdf.py' 2019-07-14T18:07:18 adding 'yaff/analysis/test/test_spectrum.py' 2019-07-14T18:07:18 adding 'yaff/conversion/__init__.py' 2019-07-14T18:07:18 adding 'yaff/conversion/common.py' 2019-07-14T18:07:18 adding 'yaff/conversion/cp2k.py' 2019-07-14T18:07:18 adding 'yaff/conversion/dlpoly.py' 2019-07-14T18:07:18 adding 'yaff/conversion/gaussian.py' 2019-07-14T18:07:18 adding 'yaff/conversion/xyz.py' 2019-07-14T18:07:18 adding 'yaff/conversion/test/__init__.py' 2019-07-14T18:07:18 adding 'yaff/conversion/test/test_cp2k.py' 2019-07-14T18:07:18 adding 'yaff/conversion/test/test_dlpoly.py' 2019-07-14T18:07:18 adding 'yaff/conversion/test/test_gaussian.py' 2019-07-14T18:07:18 adding 'yaff/conversion/test/test_xyz.py' 2019-07-14T18:07:18 adding 'yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/alpha_quartz.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/alpha_quartz_distorted.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/cases.txt' 2019-07-14T18:07:18 adding 'yaff/data/opttest/merlonite_debug.pot' 2019-07-14T18:07:18 adding 'yaff/data/opttest/merlonite_fragment.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/merlonite_fragment_overbonded.chk' 2019-07-14T18:07:18 adding 'yaff/data/opttest/water_dimer.chk' 2019-07-14T18:07:18 adding 'yaff/data/test/chloro_pos.xyz' 2019-07-14T18:07:18 adding 'yaff/data/test/chloro_vol.txt' 2019-07-14T18:07:18 adding 'yaff/data/test/cp2k-1.ener' 2019-07-14T18:07:18 adding 'yaff/data/test/dlpoly_HISTORY_an1' 2019-07-14T18:07:18 adding 'yaff/data/test/dlpoly_HISTORY_an2' 2019-07-14T18:07:18 adding 'yaff/data/test/dlpoly_HISTORY_sam' 2019-07-14T18:07:18 adding 'yaff/data/test/dlpoly_HISTORY_uo' 2019-07-14T18:07:18 adding 'yaff/data/test/gaussian_sioh4_md.log' 2019-07-14T18:07:18 adding 'yaff/data/test/gaussian_sioh4_md.xyz' 2019-07-14T18:07:19 adding 'yaff/data/test/guaianolide.xyz' 2019-07-14T18:07:19 adding 'yaff/data/test/guaianolide_framework_ordered.xyz' 2019-07-14T18:07:19 adding 'yaff/data/test/nobornane.xyz' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_alkane.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_bks.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_d3bj.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_dampdisp1.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_exprep1.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_lj.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_mm3.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_qmdffrep.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_torsion1.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_fake_torsion2.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_formaldehyde_cross.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_formaldehyde_cross_alt.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_formaldehyde_inversion.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_formaldehyde_wrong_cross.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_glycine_fixq.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_glycine_torsion.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_nacl.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_polyene.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_bendaharm.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_bendcharm.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_bondcross.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_bondfues.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_bondharm.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_cross.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_dampdisp1.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_dampdisp2.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_exprep1.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_exprep2.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_exprep3.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_fixq.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_fixq_dielectric.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_lj.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_mm3.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_ubharm.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/parameters_water_wrong_cross.txt' 2019-07-14T18:07:19 adding 'yaff/data/test/rhodium_complex_nobornane.xyz' 2019-07-14T18:07:19 adding 'yaff/data/test/water_hessian.chk' 2019-07-14T18:07:19 adding 'yaff/data/test/water_trajectory.xyz' 2019-07-14T18:07:19 adding 'yaff/examples/.gitignore' 2019-07-14T18:07:19 adding 'yaff/examples/000_overview/parameters.txt' 2019-07-14T18:07:19 adding 'yaff/examples/000_overview/simulation.py' 2019-07-14T18:07:19 adding 'yaff/examples/000_overview/system.chk' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/bks.pot' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/runall.py' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/init/mksystem.py' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/init/rvecs.txt' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/init/struct.xyz' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/nvt/analysis.py' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/nvt/simulation.py' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/opt/analysis.py' 2019-07-14T18:07:19 adding 'yaff/examples/001_tutorial_bks/opt/simulation.py' 2019-07-14T18:07:19 adding 'yaff/examples/002_external_trajectory/rdf.py' 2019-07-14T18:07:19 adding 'yaff/examples/002_external_trajectory/trajectory.xyz' 2019-07-14T18:07:19 adding 'yaff/examples/003_water_thermostat/md.py' 2019-07-14T18:07:19 adding 'yaff/examples/003_water_thermostat/parameters.txt' 2019-07-14T18:07:19 adding 'yaff/examples/003_water_thermostat/system.chk' 2019-07-14T18:07:19 adding 'yaff/examples/999_back_propagation/bp.py' 2019-07-14T18:07:19 adding 'yaff/pes/__init__.py' 2019-07-14T18:07:19 adding 'yaff/pes/cell.c' 2019-07-14T18:07:19 adding 'yaff/pes/cell.h' 2019-07-14T18:07:19 adding 'yaff/pes/cell.pxd' 2019-07-14T18:07:19 adding 'yaff/pes/constants.h' 2019-07-14T18:07:19 adding 'yaff/pes/dlist.c' 2019-07-14T18:07:19 adding 'yaff/pes/dlist.h' 2019-07-14T18:07:19 adding 'yaff/pes/dlist.pxd' 2019-07-14T18:07:19 adding 'yaff/pes/dlist.py' 2019-07-14T18:07:19 adding 'yaff/pes/ewald.c' 2019-07-14T18:07:19 adding 'yaff/pes/ewald.h' 2019-07-14T18:07:19 adding 'yaff/pes/ewald.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/ext.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T18:07:20 adding 'yaff/pes/ext.pyx' 2019-07-14T18:07:20 adding 'yaff/pes/ff.py' 2019-07-14T18:07:20 adding 'yaff/pes/generator.py' 2019-07-14T18:07:20 adding 'yaff/pes/grid.c' 2019-07-14T18:07:20 adding 'yaff/pes/grid.h' 2019-07-14T18:07:20 adding 'yaff/pes/grid.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/iclist.c' 2019-07-14T18:07:20 adding 'yaff/pes/iclist.h' 2019-07-14T18:07:20 adding 'yaff/pes/iclist.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/iclist.py' 2019-07-14T18:07:20 adding 'yaff/pes/nlist.c' 2019-07-14T18:07:20 adding 'yaff/pes/nlist.h' 2019-07-14T18:07:20 adding 'yaff/pes/nlist.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/nlist.py' 2019-07-14T18:07:20 adding 'yaff/pes/pair_pot.c' 2019-07-14T18:07:20 adding 'yaff/pes/pair_pot.h' 2019-07-14T18:07:20 adding 'yaff/pes/pair_pot.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/parameters.py' 2019-07-14T18:07:20 adding 'yaff/pes/scaling.py' 2019-07-14T18:07:20 adding 'yaff/pes/slater.c' 2019-07-14T18:07:20 adding 'yaff/pes/slater.h' 2019-07-14T18:07:20 adding 'yaff/pes/slater.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/truncation.c' 2019-07-14T18:07:20 adding 'yaff/pes/truncation.h' 2019-07-14T18:07:20 adding 'yaff/pes/truncation.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/vlist.c' 2019-07-14T18:07:20 adding 'yaff/pes/vlist.h' 2019-07-14T18:07:20 adding 'yaff/pes/vlist.pxd' 2019-07-14T18:07:20 adding 'yaff/pes/vlist.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/__init__.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/common.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_cell.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_dlist.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_ewald.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_generator.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_grid.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_iclist.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_md.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_nlist.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_pair_pot.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_parameters.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_pext.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_scaling.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_topology.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_truncation.py' 2019-07-14T18:07:20 adding 'yaff/pes/test/test_vlist.py' 2019-07-14T18:07:20 adding 'yaff/sampling/__init__.py' 2019-07-14T18:07:20 adding 'yaff/sampling/dof.py' 2019-07-14T18:07:20 adding 'yaff/sampling/harmonic.py' 2019-07-14T18:07:20 adding 'yaff/sampling/io.py' 2019-07-14T18:07:20 adding 'yaff/sampling/iterative.py' 2019-07-14T18:07:20 adding 'yaff/sampling/npt.py' 2019-07-14T18:07:20 adding 'yaff/sampling/nvt.py' 2019-07-14T18:07:20 adding 'yaff/sampling/opt.py' 2019-07-14T18:07:20 adding 'yaff/sampling/trajectory.py' 2019-07-14T18:07:20 adding 'yaff/sampling/utils.py' 2019-07-14T18:07:20 adding 'yaff/sampling/verlet.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/__init__.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/common.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_dof.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_harmonic.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_npt.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_nvt.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_opt.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_utils.py' 2019-07-14T18:07:20 adding 'yaff/sampling/test/test_verlet.py' 2019-07-14T18:07:20 adding 'yaff/test/__init__.py' 2019-07-14T18:07:20 adding 'yaff/test/common.py' 2019-07-14T18:07:20 adding 'yaff/test/test_atselect.py' 2019-07-14T18:07:20 adding 'yaff/test/test_examples.py' 2019-07-14T18:07:20 adding 'yaff/test/test_system.py' 2019-07-14T18:07:20 adding 'yaff/tune/__init__.py' 2019-07-14T18:07:20 adding 'yaff/tune/cost.py' 2019-07-14T18:07:20 adding 'yaff/tune/transform.py' 2019-07-14T18:07:20 adding 'yaff/tune/test/__init__.py' 2019-07-14T18:07:20 adding 'yaff/tune/test/test_cost.py' 2019-07-14T18:07:20 adding 'yaff/tune/test/test_transform.py' 2019-07-14T18:07:20 adding 'yaff-1.4.1.data/scripts/yaff-opttest' 2019-07-14T18:07:20 adding 'yaff-1.4.1.dist-info/METADATA' 2019-07-14T18:07:20 adding 'yaff-1.4.1.dist-info/WHEEL' 2019-07-14T18:07:20 adding 'yaff-1.4.1.dist-info/top_level.txt' 2019-07-14T18:07:20 adding 'yaff-1.4.1.dist-info/RECORD' 2019-07-14T18:07:20 removing build/bdist.linux-armv7l/wheel 2019-07-14T18:07:21 Building wheel for yaff (setup.py): finished with status 'done' 2019-07-14T18:07:21 Stored in directory: /tmp/tmpfw10taco 2019-07-14T18:07:21 Successfully built yaff 2019-07-14T18:07:21 Cleaning up... 2019-07-14T18:07:21 Removing source in /tmp/pip-wheel-xamtq3sk/yaff 2019-07-14T18:07:22 Removed build tracker '/tmp/pip-req-tracker-9mgevu1w'