2019-07-14T19:17:14 Created temporary directory: /tmp/pip-ephem-wheel-cache-mo7g23rb 2019-07-14T19:17:14 Created temporary directory: /tmp/pip-req-tracker-buek8al1 2019-07-14T19:17:14 Created requirements tracker '/tmp/pip-req-tracker-buek8al1' 2019-07-14T19:17:14 Created temporary directory: /tmp/pip-wheel-5jqnnapt 2019-07-14T19:17:14 Collecting pastis==0.2.0 2019-07-14T19:17:14 1 location(s) to search for versions of pastis: 2019-07-14T19:17:14 * https://pypi.org/simple/pastis/ 2019-07-14T19:17:14 Getting page https://pypi.org/simple/pastis/ 2019-07-14T19:17:14 Analyzing links from page https://pypi.org/simple/pastis/ 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/2a/64/2bd48039f989b92789c09bb8b1cea8096e3a03b1371ed465f57016f1ddae/pastis-0.0.1.tar.gz#sha256=902028da84a51bd7369bd7c224f9533bac494d17c7ac7fd56e47273913904e99 (from https://pypi.org/simple/pastis/), version: 0.0.1 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/28/f8/e0b9e7494c953760d5cd7885f5ee462e8297a5e47ebd45397a641c98c6d1/pastis-0.1.0.tar.gz#sha256=686213587b4ac9400f5e33e7834a61d0b2541c101304b719ef5a0f1a421173ac (from https://pypi.org/simple/pastis/), version: 0.1.0 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e (from https://pypi.org/simple/pastis/), version: 0.2.0 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/f3/b5/66032c37cfb1b02d06b6ae75a716c386beb7941299230392e63e0c394073/pastis-0.2.1.tar.gz#sha256=34a92b2b64d1c969a2410818f0e6e4637d2f1a63500322c4e37327f56a698550 (from https://pypi.org/simple/pastis/), version: 0.2.1 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/18/2f/4211c8e255357b542edf0f4fb39fae2668e0596d4a7b4b0f6663b1698f00/pastis-0.2.2.tar.gz#sha256=29e946688a07bdba20fa4b8a946d21616248eb78afb0c4a49daf9fbea302cb9a (from https://pypi.org/simple/pastis/), version: 0.2.2 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/41/e0/2bdc6d53d1d3a6f4036a3be6a0d32b0b172703ed0c3c1b08aaa34f241702/pastis-0.3.0.tar.gz#sha256=40734cd9ccac77bd3ff6a5e3b8808d547e5b4cda00a73349de32336df48a471e (from https://pypi.org/simple/pastis/), version: 0.3.0 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/8a/67/fcf3ec25bb6b2214c2300539fc83fa8d48f919cc95cb1135273682a09e35/pastis-0.3.2rc0.tar.gz#sha256=14c850135c08152961e3415187c6e6233f9451cb6a3f9e48a330b2000f4e44e9 (from https://pypi.org/simple/pastis/), version: 0.3.2rc0 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/a0/23/0c744480a3c3f8b3fa429dc1bf67fbc87f48b69e636dabbad1c27808f53e/pastis-0.3.2.tar.gz#sha256=f6a5bfd77bfbed28c017b28e528c9114c1a0af56141d123a30d59b9c2a0caac3 (from https://pypi.org/simple/pastis/), version: 0.3.2 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/1c/ba/ac902db422d66dc56b7f47c1e40fd8bef32ba5911a99143ce2dbdb81532a/pastis-0.3.3a0.tar.gz#sha256=51143ea5fb4057b2c9c67ede55666d797eb8e36a6ac22b2d4b2de04e04d198c9 (from https://pypi.org/simple/pastis/), version: 0.3.3a0 2019-07-14T19:17:14 Found link https://files.pythonhosted.org/packages/de/24/f1b8aff79784e8e1be1710faa02fe0a2129fb923692773a028d28d3353db/pastis-0.3.3.tar.gz#sha256=fadca8f3f69b55681b5b435bd2562cd1c803538a054511e11600a8fa520c892b (from https://pypi.org/simple/pastis/), version: 0.3.3 2019-07-14T19:17:14 Using version 0.2.0 (newest of versions: 0.2.0) 2019-07-14T19:17:14 Created temporary directory: /tmp/pip-unpack-aatoepvf 2019-07-14T19:17:15 Downloading https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz (350kB) 2019-07-14T19:17:15 Downloading from URL https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e (from https://pypi.org/simple/pastis/) 2019-07-14T19:17:15 Added pastis==0.2.0 from https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e to build tracker '/tmp/pip-req-tracker-buek8al1' 2019-07-14T19:17:15 Running setup.py (path:/tmp/pip-wheel-5jqnnapt/pastis/setup.py) egg_info for package pastis 2019-07-14T19:17:15 Running command python setup.py egg_info 2019-07-14T19:17:18 Appending pastis.utils configuration to pastis 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.utils') 2019-07-14T19:17:18 Appending pastis.optimization configuration to pastis 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.optimization') 2019-07-14T19:17:18 Appending pastis.externals.iced.utils configuration to pastis.externals.iced 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.utils') 2019-07-14T19:17:18 Appending pastis.externals.iced.datasets configuration to pastis.externals.iced 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.datasets') 2019-07-14T19:17:18 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:18 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:18 Appending pastis.externals.iced.io configuration to pastis.externals.iced 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.io') 2019-07-14T19:17:18 non-existing path in 'pastis/externals/iced': '../src/cblas' 2019-07-14T19:17:18 non-existing path in 'pastis/externals/iced': '../src/cblas' 2019-07-14T19:17:18 Appending pastis.externals.iced configuration to pastis.externals 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.iced') 2019-07-14T19:17:18 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:18 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:18 Appending pastis.externals.io configuration to pastis.externals 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.io') 2019-07-14T19:17:18 Appending pastis.externals configuration to pastis 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.externals') 2019-07-14T19:17:18 Appending pastis configuration to 2019-07-14T19:17:18 Ignoring attempt to set 'name' (from '' to 'pastis') 2019-07-14T19:17:18 running egg_info 2019-07-14T19:17:18 running build_src 2019-07-14T19:17:18 build_src 2019-07-14T19:17:18 building extension "pastis.externals.iced.io.fastio_" sources 2019-07-14T19:17:18 building extension "pastis.externals.iced.io.read" sources 2019-07-14T19:17:18 building extension "pastis.externals.iced._normalization_" sources 2019-07-14T19:17:18 building extension "pastis.externals.iced._filter_" sources 2019-07-14T19:17:18 building extension "pastis.externals.io.fastio_" sources 2019-07-14T19:17:18 building extension "pastis.externals.io.read" sources 2019-07-14T19:17:18 building data_files sources 2019-07-14T19:17:18 build_src: building npy-pkg config files 2019-07-14T19:17:18 creating pip-egg-info/pastis.egg-info 2019-07-14T19:17:18 writing pip-egg-info/pastis.egg-info/PKG-INFO 2019-07-14T19:17:18 writing dependency_links to pip-egg-info/pastis.egg-info/dependency_links.txt 2019-07-14T19:17:18 writing requirements to pip-egg-info/pastis.egg-info/requires.txt 2019-07-14T19:17:18 writing top-level names to pip-egg-info/pastis.egg-info/top_level.txt 2019-07-14T19:17:18 writing manifest file 'pip-egg-info/pastis.egg-info/SOURCES.txt' 2019-07-14T19:17:18 reading manifest file 'pip-egg-info/pastis.egg-info/SOURCES.txt' 2019-07-14T19:17:18 writing manifest file 'pip-egg-info/pastis.egg-info/SOURCES.txt' 2019-07-14T19:17:18 Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found)Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found)Warning: Subpackage 'pastis.externals.iced/io' configuration returned as 'pastis.externals.io' 2019-07-14T19:17:18 Source in /tmp/pip-wheel-5jqnnapt/pastis has version 0.2.0, which satisfies requirement pastis==0.2.0 from https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e 2019-07-14T19:17:18 Removed pastis==0.2.0 from https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e from build tracker '/tmp/pip-req-tracker-buek8al1' 2019-07-14T19:17:18 Building wheels for collected packages: pastis 2019-07-14T19:17:18 Created temporary directory: /tmp/pip-wheel-tqal65t6 2019-07-14T19:17:18 Building wheel for pastis (setup.py): started 2019-07-14T19:17:18 Destination directory: /tmp/pip-wheel-tqal65t6 2019-07-14T19:17:18 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-5jqnnapt/pastis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tqal65t6 2019-07-14T19:17:20 Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found)Appending pastis.utils configuration to pastis 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.utils') 2019-07-14T19:17:20 Appending pastis.optimization configuration to pastis 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.optimization') 2019-07-14T19:17:20 Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found)Appending pastis.externals.iced.utils configuration to pastis.externals.iced 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.utils') 2019-07-14T19:17:20 Appending pastis.externals.iced.datasets configuration to pastis.externals.iced 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.datasets') 2019-07-14T19:17:20 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:20 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:20 Appending pastis.externals.iced.io configuration to pastis.externals.iced 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.io') 2019-07-14T19:17:20 non-existing path in 'pastis/externals/iced': '../src/cblas' 2019-07-14T19:17:20 non-existing path in 'pastis/externals/iced': '../src/cblas' 2019-07-14T19:17:20 Appending pastis.externals.iced configuration to pastis.externals 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.iced') 2019-07-14T19:17:20 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:20 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2019-07-14T19:17:20 Warning: Subpackage 'pastis.externals.iced/io' configuration returned as 'pastis.externals.io'Appending pastis.externals.io configuration to pastis.externals 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.io') 2019-07-14T19:17:20 Appending pastis.externals configuration to pastis 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.externals') 2019-07-14T19:17:20 Appending pastis configuration to 2019-07-14T19:17:20 Ignoring attempt to set 'name' (from '' to 'pastis') 2019-07-14T19:17:20 running bdist_wheel 2019-07-14T19:17:20 running build 2019-07-14T19:17:20 running config_cc 2019-07-14T19:17:20 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2019-07-14T19:17:20 running config_fc 2019-07-14T19:17:20 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2019-07-14T19:17:20 running build_src 2019-07-14T19:17:20 build_src 2019-07-14T19:17:20 building extension "pastis.externals.iced.io.fastio_" sources 2019-07-14T19:17:20 building extension "pastis.externals.iced.io.read" sources 2019-07-14T19:17:20 building extension "pastis.externals.iced._normalization_" sources 2019-07-14T19:17:20 building extension "pastis.externals.iced._filter_" sources 2019-07-14T19:17:20 building extension "pastis.externals.io.fastio_" sources 2019-07-14T19:17:20 building extension "pastis.externals.io.read" sources 2019-07-14T19:17:20 building data_files sources 2019-07-14T19:17:20 build_src: building npy-pkg config files 2019-07-14T19:17:20 running build_py 2019-07-14T19:17:20 creating build 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 copying pastis/fastio.py -> build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 copying pastis/__init__.py -> build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 copying pastis/config.py -> build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 copying pastis/io.py -> build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 copying pastis/setup.py -> build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 copying pastis/algorithms.py -> build/lib.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/utils 2019-07-14T19:17:20 copying pastis/utils/__init__.py -> build/lib.linux-armv7l-3.7/pastis/utils 2019-07-14T19:17:20 copying pastis/utils/validation.py -> build/lib.linux-armv7l-3.7/pastis/utils 2019-07-14T19:17:20 copying pastis/utils/bezier.py -> build/lib.linux-armv7l-3.7/pastis/utils 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/__init__.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/negative_binomial.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/utils.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/poisson_structure.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/mds.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/negative_binomial_structure.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/mds_old.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/setup.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 copying pastis/optimization/poisson_model.py -> build/lib.linux-armv7l-3.7/pastis/optimization 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/externals 2019-07-14T19:17:20 copying pastis/externals/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals 2019-07-14T19:17:20 copying pastis/externals/test_externals_setup.py -> build/lib.linux-armv7l-3.7/pastis/externals 2019-07-14T19:17:20 copying pastis/externals/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/externals/iced 2019-07-14T19:17:20 copying pastis/externals/iced/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced 2019-07-14T19:17:20 copying pastis/externals/iced/filter.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced 2019-07-14T19:17:20 copying pastis/externals/iced/normalization.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced 2019-07-14T19:17:20 copying pastis/externals/iced/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/externals/iced/utils 2019-07-14T19:17:20 copying pastis/externals/iced/utils/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils 2019-07-14T19:17:20 copying pastis/externals/iced/utils/validation.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils 2019-07-14T19:17:20 copying pastis/externals/iced/utils/_validation.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils 2019-07-14T19:17:20 copying pastis/externals/iced/utils/_genome.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets 2019-07-14T19:17:20 copying pastis/externals/iced/datasets/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets 2019-07-14T19:17:20 copying pastis/externals/iced/datasets/base.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets 2019-07-14T19:17:20 copying pastis/externals/iced/datasets/dldata.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets 2019-07-14T19:17:20 copying pastis/externals/iced/datasets/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/externals/iced/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/_io_pandas.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/_io_else.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io 2019-07-14T19:17:20 creating build/lib.linux-armv7l-3.7/pastis/externals/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/_io_pandas.py -> build/lib.linux-armv7l-3.7/pastis/externals/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/_io_else.py -> build/lib.linux-armv7l-3.7/pastis/externals/io 2019-07-14T19:17:20 copying pastis/externals/iced/io/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/io 2019-07-14T19:17:20 running build_ext 2019-07-14T19:17:20 customize UnixCCompiler 2019-07-14T19:17:20 customize UnixCCompiler using build_ext 2019-07-14T19:17:20 building 'pastis.externals.iced.io.fastio_' extension 2019-07-14T19:17:20 compiling C sources 2019-07-14T19:17:20 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2019-07-14T19:17:20 creating build/temp.linux-armv7l-3.7/pastis 2019-07-14T19:17:20 creating build/temp.linux-armv7l-3.7/pastis/externals 2019-07-14T19:17:20 creating build/temp.linux-armv7l-3.7/pastis/externals/iced 2019-07-14T19:17:20 creating build/temp.linux-armv7l-3.7/pastis/externals/iced/io 2019-07-14T19:17:20 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c' 2019-07-14T19:17:20 arm-linux-gnueabihf-gcc: pastis/externals/iced/io/fastio_.c 2019-07-14T19:17:21 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-07-14T19:17:21 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-07-14T19:17:21 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T19:17:21 from pastis/externals/iced/io/fastio_.c:352: 2019-07-14T19:17:21 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-07-14T19:17:21 #warning "Using deprecated NumPy API, disable it with " \ 2019-07-14T19:17:21 ^~~~~~~ 2019-07-14T19:17:21 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2019-07-14T19:17:21 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T19:17:21 from pastis/externals/iced/io/fastio_.c:352: 2019-07-14T19:17:21 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2019-07-14T19:17:21 _import_array(void) 2019-07-14T19:17:21 ^~~~~~~~~~~~~ 2019-07-14T19:17:26 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T19:17:26 building 'pastis.externals.iced.io.read' extension 2019-07-14T19:17:26 compiling C sources 2019-07-14T19:17:26 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2019-07-14T19:17:26 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c' 2019-07-14T19:17:26 arm-linux-gnueabihf-gcc: pastis/externals/iced/io/read.c 2019-07-14T19:17:26 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/io/read.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/io/read.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T19:17:27 building 'pastis.externals.iced._normalization_' extension 2019-07-14T19:17:27 compiling C sources 2019-07-14T19:17:27 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2019-07-14T19:17:27 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c' 2019-07-14T19:17:27 arm-linux-gnueabihf-gcc: pastis/externals/iced/_normalization_.c 2019-07-14T19:17:27 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-07-14T19:17:27 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-07-14T19:17:27 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T19:17:27 from pastis/externals/iced/_normalization_.c:352: 2019-07-14T19:17:27 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-07-14T19:17:27 #warning "Using deprecated NumPy API, disable it with " \ 2019-07-14T19:17:27 ^~~~~~~ 2019-07-14T19:17:28 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2019-07-14T19:17:28 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T19:17:28 from pastis/externals/iced/_normalization_.c:352: 2019-07-14T19:17:28 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2019-07-14T19:17:28 _import_array(void) 2019-07-14T19:17:28 ^~~~~~~~~~~~~ 2019-07-14T19:17:30 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/_normalization_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/_normalization_.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T19:17:31 building 'pastis.externals.iced._filter_' extension 2019-07-14T19:17:31 compiling C sources 2019-07-14T19:17:31 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2019-07-14T19:17:31 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c' 2019-07-14T19:17:31 arm-linux-gnueabihf-gcc: pastis/externals/iced/_filter_.c 2019-07-14T19:17:31 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-07-14T19:17:31 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-07-14T19:17:31 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T19:17:31 from pastis/externals/iced/_filter_.c:352: 2019-07-14T19:17:31 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-07-14T19:17:31 #warning "Using deprecated NumPy API, disable it with " \ 2019-07-14T19:17:31 ^~~~~~~ 2019-07-14T19:17:31 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2019-07-14T19:17:31 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T19:17:31 from pastis/externals/iced/_filter_.c:352: 2019-07-14T19:17:31 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2019-07-14T19:17:31 _import_array(void) 2019-07-14T19:17:31 ^~~~~~~~~~~~~ 2019-07-14T19:17:34 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/_filter_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/_filter_.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T19:17:35 building 'pastis.externals.io.fastio_' extension 2019-07-14T19:17:35 compiling C sources 2019-07-14T19:17:35 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2019-07-14T19:17:35 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c' 2019-07-14T19:17:35 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/io/fastio_.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T19:17:35 building 'pastis.externals.io.read' extension 2019-07-14T19:17:35 compiling C sources 2019-07-14T19:17:35 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2019-07-14T19:17:35 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c' 2019-07-14T19:17:35 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/io/read.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/io/read.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T19:17:35 running build_scripts 2019-07-14T19:17:35 creating build/scripts.linux-armv7l-3.7 2019-07-14T19:17:35 copying and adjusting pastis/script/pastis-mds -> build/scripts.linux-armv7l-3.7 2019-07-14T19:17:35 copying and adjusting pastis/script/pastis-nmds -> build/scripts.linux-armv7l-3.7 2019-07-14T19:17:35 copying and adjusting pastis/script/pastis-pm1 -> build/scripts.linux-armv7l-3.7 2019-07-14T19:17:35 copying and adjusting pastis/script/pastis-pm2 -> build/scripts.linux-armv7l-3.7 2019-07-14T19:17:35 changing mode of build/scripts.linux-armv7l-3.7/pastis-mds from 644 to 755 2019-07-14T19:17:35 changing mode of build/scripts.linux-armv7l-3.7/pastis-nmds from 644 to 755 2019-07-14T19:17:35 changing mode of build/scripts.linux-armv7l-3.7/pastis-pm1 from 644 to 755 2019-07-14T19:17:35 changing mode of build/scripts.linux-armv7l-3.7/pastis-pm2 from 644 to 755 2019-07-14T19:17:35 installing to build/bdist.linux-armv7l/wheel 2019-07-14T19:17:35 running install 2019-07-14T19:17:35 running install_lib 2019-07-14T19:17:35 creating build/bdist.linux-armv7l 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/utils/validation.py -> build/bdist.linux-armv7l/wheel/pastis/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/utils/bezier.py -> build/bdist.linux-armv7l/wheel/pastis/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/fastio.py -> build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/__init__.py -> build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/test_externals_setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/io/_io_pandas.py -> build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/io/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/io/_io_else.py -> build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/io/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/io/read.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/io/fastio_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/io 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/validation.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/_validation.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/_genome.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/filter.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/_filter_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/_io_pandas.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/_io_else.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/read.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/base.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/dldata.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/iced/_normalization_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/externals/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/config.py -> build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/io.py -> build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/setup.py -> build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/algorithms.py -> build/bdist.linux-armv7l/wheel/pastis 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/negative_binomial.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/utils.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/poisson_structure.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/mds.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/negative_binomial_structure.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/mds_old.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/setup.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 copying build/lib.linux-armv7l-3.7/pastis/optimization/poisson_model.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2019-07-14T19:17:35 running install_data 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2019-07-14T19:17:35 copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.matrix -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2019-07-14T19:17:35 copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.cnv -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2019-07-14T19:17:35 copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2019-07-14T19:17:35 running install_clib 2019-07-14T19:17:35 customize UnixCCompiler 2019-07-14T19:17:35 running install_egg_info 2019-07-14T19:17:35 running egg_info 2019-07-14T19:17:35 creating pastis.egg-info 2019-07-14T19:17:35 writing pastis.egg-info/PKG-INFO 2019-07-14T19:17:35 writing dependency_links to pastis.egg-info/dependency_links.txt 2019-07-14T19:17:35 writing requirements to pastis.egg-info/requires.txt 2019-07-14T19:17:35 writing top-level names to pastis.egg-info/top_level.txt 2019-07-14T19:17:35 writing manifest file 'pastis.egg-info/SOURCES.txt' 2019-07-14T19:17:35 reading manifest file 'pastis.egg-info/SOURCES.txt' 2019-07-14T19:17:35 writing manifest file 'pastis.egg-info/SOURCES.txt' 2019-07-14T19:17:35 Copying pastis.egg-info to build/bdist.linux-armv7l/wheel/pastis-0.2.0-py3.7.egg-info 2019-07-14T19:17:35 running install_scripts 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis-0.2.0.data 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts 2019-07-14T19:17:35 copying build/scripts.linux-armv7l-3.7/pastis-pm2 -> build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts 2019-07-14T19:17:35 copying build/scripts.linux-armv7l-3.7/pastis-mds -> build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts 2019-07-14T19:17:35 copying build/scripts.linux-armv7l-3.7/pastis-pm1 -> build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts 2019-07-14T19:17:35 copying build/scripts.linux-armv7l-3.7/pastis-nmds -> build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts 2019-07-14T19:17:35 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts/pastis-pm2 to 755 2019-07-14T19:17:35 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts/pastis-mds to 755 2019-07-14T19:17:35 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts/pastis-pm1 to 755 2019-07-14T19:17:35 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.2.0.data/scripts/pastis-nmds to 755 2019-07-14T19:17:35 creating build/bdist.linux-armv7l/wheel/pastis-0.2.0.dist-info/WHEEL 2019-07-14T19:17:35 creating '/tmp/pip-wheel-tqal65t6/pastis-0.2.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2019-07-14T19:17:35 adding 'pastis/__init__.py' 2019-07-14T19:17:35 adding 'pastis/algorithms.py' 2019-07-14T19:17:35 adding 'pastis/config.py' 2019-07-14T19:17:35 adding 'pastis/fastio.py' 2019-07-14T19:17:35 adding 'pastis/io.py' 2019-07-14T19:17:35 adding 'pastis/setup.py' 2019-07-14T19:17:35 adding 'pastis/externals/__init__.py' 2019-07-14T19:17:35 adding 'pastis/externals/setup.py' 2019-07-14T19:17:35 adding 'pastis/externals/test_externals_setup.py' 2019-07-14T19:17:35 adding 'pastis/externals/iced/__init__.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/_filter_.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T19:17:36 adding 'pastis/externals/iced/_normalization_.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T19:17:36 adding 'pastis/externals/iced/filter.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/normalization.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/setup.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/__init__.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/base.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/dldata.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/setup.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.bed' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.cnv' 2019-07-14T19:17:36 adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.matrix' 2019-07-14T19:17:36 adding 'pastis/externals/iced/io/__init__.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/io/_io_else.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/io/_io_pandas.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/io/fastio_.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T19:17:36 adding 'pastis/externals/iced/io/read.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T19:17:36 adding 'pastis/externals/iced/io/setup.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/utils/__init__.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/utils/_genome.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/utils/_validation.py' 2019-07-14T19:17:36 adding 'pastis/externals/iced/utils/validation.py' 2019-07-14T19:17:36 adding 'pastis/externals/io/__init__.py' 2019-07-14T19:17:36 adding 'pastis/externals/io/_io_else.py' 2019-07-14T19:17:36 adding 'pastis/externals/io/_io_pandas.py' 2019-07-14T19:17:36 adding 'pastis/externals/io/fastio_.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T19:17:36 adding 'pastis/externals/io/read.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T19:17:36 adding 'pastis/externals/io/setup.py' 2019-07-14T19:17:36 adding 'pastis/optimization/__init__.py' 2019-07-14T19:17:36 adding 'pastis/optimization/mds.py' 2019-07-14T19:17:36 adding 'pastis/optimization/mds_old.py' 2019-07-14T19:17:36 adding 'pastis/optimization/negative_binomial.py' 2019-07-14T19:17:36 adding 'pastis/optimization/negative_binomial_structure.py' 2019-07-14T19:17:36 adding 'pastis/optimization/poisson_model.py' 2019-07-14T19:17:36 adding 'pastis/optimization/poisson_structure.py' 2019-07-14T19:17:36 adding 'pastis/optimization/setup.py' 2019-07-14T19:17:36 adding 'pastis/optimization/utils.py' 2019-07-14T19:17:36 adding 'pastis/utils/__init__.py' 2019-07-14T19:17:36 adding 'pastis/utils/bezier.py' 2019-07-14T19:17:36 adding 'pastis/utils/validation.py' 2019-07-14T19:17:36 adding 'pastis-0.2.0.data/scripts/pastis-mds' 2019-07-14T19:17:36 adding 'pastis-0.2.0.data/scripts/pastis-nmds' 2019-07-14T19:17:36 adding 'pastis-0.2.0.data/scripts/pastis-pm1' 2019-07-14T19:17:36 adding 'pastis-0.2.0.data/scripts/pastis-pm2' 2019-07-14T19:17:36 adding 'pastis-0.2.0.dist-info/METADATA' 2019-07-14T19:17:36 adding 'pastis-0.2.0.dist-info/WHEEL' 2019-07-14T19:17:36 adding 'pastis-0.2.0.dist-info/top_level.txt' 2019-07-14T19:17:36 adding 'pastis-0.2.0.dist-info/RECORD' 2019-07-14T19:17:36 removing build/bdist.linux-armv7l/wheel 2019-07-14T19:17:36 Building wheel for pastis (setup.py): finished with status 'done' 2019-07-14T19:17:36 Stored in directory: /tmp/tmpdwnycr_c 2019-07-14T19:17:36 Successfully built pastis 2019-07-14T19:17:36 Cleaning up... 2019-07-14T19:17:36 Removing source in /tmp/pip-wheel-5jqnnapt/pastis 2019-07-14T19:17:36 Removed build tracker '/tmp/pip-req-tracker-buek8al1'